CsGy6G015330 (gene) Cucumber (Gy14) v2

Overview
NameCsGy6G015330
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUnknown Protein
LocationChr6 : 13924729 .. 13925248 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCGTCTCTATCTTTGTTCGCAAAGCAAACCGCACGCCTCATTCACGAACAGCCTCGCCGACGCAGGTCACGCCGCATCGCACGAGTTCGGCTACATTGCCGGGCTACTCCCGTCAGTGCGTAACTGCTGTTGAACGTCCGAACCAATCTGCCTTCGTCGGTACCTGCTATCCCATTTACGAATTGCGGACTGATTCGCGTGCAGATTTGTTTTGCACAATTTCTTTTGTGTAGATCCTGCGACAACTTCTATTTTAGCGTCGATTGTCAAAGTCTTGTTATAAGTTGTTGGTAAGGATGAGATTGTTGGGTAATAAGGTTTTGCATTTGTAAATACATTAAGGTGTGATGTTTGTTTAATTGGTTGAATTGATGTTTGTTCTTGAAGGCGACATCGGTGATTTGGAGTTAGTGTCCTTGAGTTACGCCTTAAGCTTTGTTGGAGTTCGATTCTTTACTCTTTAGGGTTTGATTGTTGGTCTTTGTTGACCAAGAAACTTAGGAAATCTTAAGGTAAGGG

mRNA sequence

GCCGTCTCTATCTTTGTTCGCAAAGCAAACCGCACGCCTCATTCACGAACAGCCTCGCCGACGCAGGTCACGCCGCATCGCACGAGTTCGGCTACATTGCCGGGCTACTCCCGTCAGTGCGTAACTGCTGTTGAACGTCCGAACCAATCTGCCTTCGTCGGTACCTGCTATCCCATTTACGAATTGCGGACTGATTCGCGTGCAGATTTGTTTTGCACAATTTCTTTTGTGTAGATCCTGCGACAACTTCTATTTTAGCGTCGATTGTCAAAGTCTTGTTATAAGTTGTTGGCGACATCGGTGATTTGGAGTTAGTGTCCTTGAGTTACGCCTTAAGCTTTGTTGGAGTTCGATTCTTTACTCTTTAGGGTTTGATTGTTGGTCTTTGTTGACCAAGAAACTTAGGAAATCTTAAGGTAAGGG

Coding sequence (CDS)

GCCGTCTCTATCTTTGTTCGCAAAGCAAACCGCACGCCTCATTCACGAACAGCCTCGCCGACGCAGGTCACGCCGCATCGCACGAGTTCGGCTACATTGCCGGGCTACTCCCGTCAGTGCGTAACTGCTGTTGAACGTCCGAACCAATCTGCCTTCGTCGGTACCTGCTATCCCATTTACGAATTGCGGACTGATTCGCGTGCAGATTTGTTTTGCACAATTTCTTTTGTGTAG

Protein sequence

AVSIFVRKANRTPHSRTASPTQVTPHRTSSATLPGYSRQCVTAVERPNQSAFVGTCYPIYELRTDSRADLFCTISFV
Homology
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BLAST of CsGy6G015330 vs. NCBI nr
Match: XP_011652802.1 (PREDICTED: uncharacterized protein LOC105435103 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 6.6e-14
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 1   AVSIFVRKANRTPHSRTASPTQVTPHRTSSATLPGYSRQCVTAVERPNQSAFVGT 56
           AVSI VR+A+RTP SRTASPTQVTPHRT+SATLPGYSR  V AVERPN+SAFV T
Sbjct: 84  AVSISVREASRTPQSRTASPTQVTPHRTNSATLPGYSRPRVIAVERPNRSAFVDT 138

The following BLAST results are available for this feature:
BLAST of CsGy6G015330 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011652802.16.6e-1481.82PREDICTED: uncharacterized protein LOC105435103 [Cucumis sativus][more]
BLAST of CsGy6G015330 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy6G015330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy6G015330 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G015330.1CsGy6G015330.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..31

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy6G015330Cucurbita maxima (Rimu)cgybcmaB805
CsGy6G015330Cucurbita moschata (Rifu)cgybcmoB785
CsGy6G015330Cucurbita pepo (Zucchini)cgybcpeB764
CsGy6G015330Cucumber (Chinese Long) v2cgybcuB287
CsGy6G015330Bottle gourd (USVL1VR-Ls)cgyblsiB375
CsGy6G015330Watermelon (Charleston Gray)cgybwcgB417
CsGy6G015330Watermelon (97103) v1cgybwmB492
CsGy6G015330Wild cucumber (PI 183967)cgybcpiB293
CsGy6G015330Cucumber (Chinese Long) v3cgybcucB298
CsGy6G015330Watermelon (97103) v2cgybwmbB424
CsGy6G015330Wax gourdcgybwgoB574