CsGy6G013710 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G013710
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Ribosomal protein S18, putative
Location	Chr6 : 12185316 .. 12187349 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGTTTGTAACTTCACTACAGGTACCAATTCTCCAGGATGTGAAGGTCTTCACCATTTTGTAATACTGTGTTAAAATCGATCGCTGGTGATCTCTTTGAAGAACTTTCCCCTTTGTCACCGAGAACATATGCACGAAATTTCCAGCGGTGTCTTCCACACGACTTCATCCCTATTTATCAATGCATTCTTCAACACCGATGTTTTTCAGTTGGACCTTCCATTATTTTTTTACGAAATTTGCAGCACATTCCCTGAACCTTCTCCTTGATTTGTCTCTGTGATTGTTGTTGACGATAGACTCTATAAGTGACTTGTTGAAGGTCCAATTCCGATCCCTCTGCTACCTCCACTCATCCCTTTCGTTGGCGCTTCTTCCAAGTTGTCTCCAACCATCAAATCAACACTCAGTGAACTCTTCGCAGAACTTTTGCCCCATTGCCTGGAATTCCTTTTCGATGGTATGCACCATTGCCTGGAATTCCTTTTTGATGGTATGCAAACCTCGATAGTTTTTTGGTTGGCTGCTCTTTGCAATGGACAGTCATCCAGCACACTTGGTTCTTTCTACACCTCTTTTCACGCTTTCTCATTTGCCTCCTGTCTACATCACTTTCCCTAAATCTTTTCTCCCATTTGTTCTTGCTCGATTTCTTGTTTTTTCTTCTCAGTCTTCTTTGCAAGAAGATTTAGAGGCTTCTTTCCTTCTTCTTCCTCATTGCTTATAACAGTTTGTTCCTTCTCAATCACTGATTCTGAAACTTTTTGCACCGAGTAAGTTCCCACCACATTTTTCTTTGGTTCCACTGAAGCTAATTCCATAATTCCTTTCTCGTTATCAGTTACCATTCACTTTGATGAAGCTGATCCTCAATCGCTGCACATCCAGGTCTCCTGGCGACACAACCAAATTCAGCTGTGATCCGACAGGAAGTCAAAATTTCCACTAAGCTCCTTAAATTGAGAATCCATCCTTGATTTCGTTGCTGCTTGCTTCTCTCCCACTTCAAGCAACTTCTCTTCCTTCCATCTTTTTCATAATGCCAAGATTGATCGCTCTGATACCAAATTGCTTAAACTAGGTTATATTGAGATATAAAAGATAATGGTAACACAAGATAAACCAAGTGTTTGAGGTACTTGGACCCTCCCAATTTTGAAAAAAACTCTTAGCCCTGATTCACACATGAAAATATTGCTTTCCTTCTCCATTCTCTTTTCTCTCTATTTATAACAAACTTCCCTGACAAACTGCTCCACTAATTACTAATATACCCTTAATATTCCCCATGACCATTCCTCTCCTAGTGATTCTAAAATGGTTAAAACGACTTGTCATTTTCAAAATCTTTTGCAAAATGCTTTTAATAAGTCAACATCCGTTTTAAATAGTATGAAAATTGCGTTTTCAAAAGTGTAAAATTAACCATTGAGTTGACTTCGAGTGATCGAGTGTCGGCCTTCGAGTGATTTTAAATATGACAAAAGTCACTCCCAAACATAGTGCTCTTTTTGTGGCCATTGAAATTTAGTCTTGTCCATAGCTCTATTTATGAAGTTTATTTATAATATAGAGTACCTCTTCGAGCAAATAAAATACTTGATGGGGGTTAAATTGTATTTCCATGTTTCTTACCCCTGCTGTAGGCATATCTAACTAGCGATTAGCTTGTTTGCAGAATGTTAGGTTTTTGGCGAACTTTATAACTGAGGCTGGGATCATTAACAAGAGGAGCAATGTAAACTTCTTGAACAAAAGCCAGATTTTGAACAAGTTGAGAGTCATCAACCTTTGTCTTATTTTATCATATCATCAATTTTTTTGCAGACACGTATTAGTGCCAAGGCACAGAGGAAAGTTGCACGTGAGATCAAAACTGCACGAGCATTTGGCTTAATGCCCTTCACAACAATGGGAACCAAATCATTCAATTTTGGCAAAAGCATGGAGAATCTTGATACGGACTTTGAGTATGAGGTTTTTGACAATGATAATACTGATGCAGATGGAGGTCACCCGCTCAGATCCTAA

mRNA sequence

ATGTTAGTTTGTAACTTCACTACAGGTACCAATTCTCCAGGATGTGAAGGTCCAATTCCGATCCCTCTGCTACCTCCACTCATCCCTTTCGTTGGCGCTTCTTCCAAGTTGTCTCCAACCATCAAATCAACACTCAGTGAACTCTTCGCAGAACTTTTGCCCCATTGCCTGGAATTCCTTTTCGATGGTATGCACCATTGCCTGGAATTCCTTTTTGATGTTACCATTCACTTTGATGAAGCTGATCCTCAATCGCTGCACATCCAGAATGTTAGGTTTTTGGCGAACTTTATAACTGAGGCTGGGATCATTAACAAGAGGAGCAATACACGTATTAGTGCCAAGGCACAGAGGAAAGTTGCACGTGAGATCAAAACTGCACGAGCATTTGGCTTAATGCCCTTCACAACAATGGGAACCAAATCATTCAATTTTGGCAAAAGCATGGAGAATCTTGATACGGACTTTGAGTATGAGGTTTTTGACAATGATAATACTGATGCAGATGGAGGTCACCCGCTCAGATCCTAA

Coding sequence (CDS)

ATGTTAGTTTGTAACTTCACTACAGGTACCAATTCTCCAGGATGTGAAGGTCCAATTCCGATCCCTCTGCTACCTCCACTCATCCCTTTCGTTGGCGCTTCTTCCAAGTTGTCTCCAACCATCAAATCAACACTCAGTGAACTCTTCGCAGAACTTTTGCCCCATTGCCTGGAATTCCTTTTCGATGGTATGCACCATTGCCTGGAATTCCTTTTTGATGTTACCATTCACTTTGATGAAGCTGATCCTCAATCGCTGCACATCCAGAATGTTAGGTTTTTGGCGAACTTTATAACTGAGGCTGGGATCATTAACAAGAGGAGCAATACACGTATTAGTGCCAAGGCACAGAGGAAAGTTGCACGTGAGATCAAAACTGCACGAGCATTTGGCTTAATGCCCTTCACAACAATGGGAACCAAATCATTCAATTTTGGCAAAAGCATGGAGAATCTTGATACGGACTTTGAGTATGAGGTTTTTGACAATGATAATACTGATGCAGATGGAGGTCACCCGCTCAGATCCTAA

Protein sequence

MLVCNFTTGTNSPGCEGPIPIPLLPPLIPFVGASSKLSPTIKSTLSELFAELLPHCLEFLFDGMHHCLEFLFDVTIHFDEADPQSLHIQNVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFNFGKSMENLDTDFEYEVFDNDNTDADGGHPLRS

Homology

[Close]

BLAST of CsGy6G013710 vs. NCBI nr
Match: XP_004143160.1 (PREDICTED: uncharacterized protein LOC101213524 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 5.5e-40
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 89  QNVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFNFGKS 148
           +NVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFNFGKS
Sbjct: 186 RNVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFNFGKS 245

Query: 149 MENLDTDFEYEVFDNDNTDADGGHPLRS 177
           MENLDTDFEYEVFDNDNTDADGGHPLRS
Sbjct: 246 MENLDTDFEYEVFDNDNTDADGGHPLRS 273

[Close]

BLAST of CsGy6G013710 vs. NCBI nr
Match: KGN47078.1 (hypothetical protein Csa_6G185280 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 7.2e-40
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 90  NVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFNFGKSM 149
           NVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFNFGKSM
Sbjct: 7   NVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFNFGKSM 66

Query: 150 ENLDTDFEYEVFDNDNTDADGGHPLRS 177
           ENLDTDFEYEVFDNDNTDADGGHPLRS
Sbjct: 67  ENLDTDFEYEVFDNDNTDADGGHPLRS 93

[Close]

BLAST of CsGy6G013710 vs. NCBI nr
Match: XP_008464035.1 (PREDICTED: uncharacterized protein LOC103502018 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 5.7e-37
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 89  QNVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFNFGKS 148
           +NVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSF FGKS
Sbjct: 186 RNVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKS 245

Query: 149 MENLDTDFEYEVFDNDNTDADGGHPLRS 177
           MENLDTDFEYEVFDNDNTDADGG  LRS
Sbjct: 246 MENLDTDFEYEVFDNDNTDADGGRMLRS 273

[Close]

BLAST of CsGy6G013710 vs. NCBI nr
Match: XP_022148322.1 (uncharacterized protein LOC111017003 [Momordica charantia])

HSP 1 Score: 139.8 bits (351), Expect = 8.8e-30
Identity = 73/88 (82.95%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 89  QNVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFNFGKS 148
           +NVRFLANFIT+AGIINKRS T ISAKAQRKVAREIKTARAFGLMPFTTMGTK+F FGK+
Sbjct: 185 RNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKTFVFGKT 244

Query: 149 MENLDTDFEYEVFDNDNTDADGGHPLRS 177
           ME+LD D+EYEVFDN   DAD GHPL S
Sbjct: 245 MEDLDKDYEYEVFDN-TADADRGHPLGS 271

[Close]

BLAST of CsGy6G013710 vs. NCBI nr
Match: XP_022986919.1 (uncharacterized protein LOC111484513 [Cucurbita maxima])

HSP 1 Score: 138.7 bits (348), Expect = 2.0e-29
Identity = 73/88 (82.95%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 89  QNVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFNFGKS 148
           +NVRFLANFIT+AGII KRS TRISAKAQRKVAREIKTARAFGLMPFTTMGTKSF FGK+
Sbjct: 184 RNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKT 243

Query: 149 MENLDTDFEYEVFDNDNTDADGGHPLRS 177
           ME+LD D+EYEVFDN+    DGGHPL S
Sbjct: 244 MEDLDKDYEYEVFDNN----DGGHPLGS 267

[Close]

BLAST of CsGy6G013710 vs. TAIR10
Match: AT1G07210.1 (Ribosomal protein S18)

HSP 1 Score: 124.4 bits (311), Expect = 6.9e-29
Identity = 64/82 (78.05%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 89  QNVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFNFGKS 148
           +NVRFLANFITEAGII KR  T ISAKAQRK+AREIKTARAFGLMPFTTMGTK+F FGK+
Sbjct: 178 RNVRFLANFITEAGIIIKRKQTGISAKAQRKIAREIKTARAFGLMPFTTMGTKAFQFGKT 237

Query: 149 MENLDTDFEYEVFDNDNTDADG 171
           MEN D DFEYEV D+D+   +G
Sbjct: 238 MENRDQDFEYEVLDDDDEFDEG 259

[Close]

BLAST of CsGy6G013710 vs. Swiss-Prot
Match: sp|Q5NN60|RS18_ZYMMO (30S ribosomal protein S18 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=rpsR PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.3e-04
Identity = 25/58 (43.10%), Postives = 34/58 (58.62%), Query Frame = 0


Query: 78  FDEADPQSLHIQNVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPF 136
           F   D   +  ++VR L  F++E G I     T +SAK QR++AR IK AR  GL+PF
Sbjct: 14  FAAKDAPKIDYKDVRLLQGFVSERGKIVPSRITAVSAKKQRELARAIKRARHIGLLPF 71

[Close]

BLAST of CsGy6G013710 vs. Swiss-Prot
Match: sp|P62659|RS18_THET2 (30S ribosomal protein S18 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) OX=262724 GN=rpsR PE=1 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 7.4e-04
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 89  QNVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFT 137
           +NV  L  F++E G I  R  T +SAK QR +A+ IK AR  GL+PFT
Sbjct: 35  RNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFT 82

[Close]

BLAST of CsGy6G013710 vs. Swiss-Prot
Match: sp|Q5SLQ0|RS18_THET8 (30S ribosomal protein S18 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) OX=300852 GN=rpsR PE=1 SV=3)

HSP 1 Score: 45.4 bits (106), Expect = 7.4e-04
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 89  QNVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFT 137
           +NV  L  F++E G I  R  T +SAK QR +A+ IK AR  GL+PFT
Sbjct: 35  RNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFT 82

[Close]

BLAST of CsGy6G013710 vs. Swiss-Prot
Match: sp|Q04TH1|RS18_LEPBJ (30S ribosomal protein S18 OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) OX=355277 GN=rpsR PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.6e-04
Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 0


Query: 81  ADPQ---SLHIQNVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPF 136
           ADP+    ++ +N+  L  FIT  G I  R  T  SA+ QR +AREI+ AR+ GL+P+
Sbjct: 21  ADPELAKQINYKNIELLERFITNRGKIIPRRITGTSARYQRVLAREIRKARSIGLLPY 78

[Close]

BLAST of CsGy6G013710 vs. Swiss-Prot
Match: sp|Q052K0|RS18_LEPBL (30S ribosomal protein S18 OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) OX=355276 GN=rpsR PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.6e-04
Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 0


Query: 81  ADPQ---SLHIQNVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPF 136
           ADP+    ++ +N+  L  FIT  G I  R  T  SA+ QR +AREI+ AR+ GL+P+
Sbjct: 21  ADPELAKQINYKNIELLERFITNRGKIIPRRITGTSARYQRVLAREIRKARSIGLLPY 78

[Close]

BLAST of CsGy6G013710 vs. TrEMBL
Match: tr|A0A0A0KC48|A0A0A0KC48_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G185280 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.8e-40
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 90  NVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFNFGKSM 149
           NVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFNFGKSM
Sbjct: 7   NVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFNFGKSM 66

Query: 150 ENLDTDFEYEVFDNDNTDADGGHPLRS 177
           ENLDTDFEYEVFDNDNTDADGGHPLRS
Sbjct: 67  ENLDTDFEYEVFDNDNTDADGGHPLRS 93

[Close]

BLAST of CsGy6G013710 vs. TrEMBL
Match: tr|A0A1S3CM21|A0A1S3CM21_CUCME (uncharacterized protein LOC103502018 OS=Cucumis melo OX=3656 GN=LOC103502018 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.8e-37
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 89  QNVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFNFGKS 148
           +NVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSF FGKS
Sbjct: 186 RNVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKS 245

Query: 149 MENLDTDFEYEVFDNDNTDADGGHPLRS 177
           MENLDTDFEYEVFDNDNTDADGG  LRS
Sbjct: 246 MENLDTDFEYEVFDNDNTDADGGRMLRS 273

[Close]

BLAST of CsGy6G013710 vs. TrEMBL
Match: tr|A0A2N9HMY4|A0A2N9HMY4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41494 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.0e-27
Identity = 70/87 (80.46%), Postives = 75/87 (86.21%), Query Frame = 0


Query: 89  QNVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFNFGKS 148
           +NVRFLANFITEAGII KRS TRISAKAQRKVAREIKTARAFGLMPFTTMGTKSF FGK+
Sbjct: 183 RNVRFLANFITEAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKT 242

Query: 149 MENLDTDFEYEVFD-NDNTDADGGHPL 175
           ME LD DFEYE +D + + DAD   PL
Sbjct: 243 MEALDEDFEYETYDSHSSADADAKDPL 269

[Close]

BLAST of CsGy6G013710 vs. TrEMBL
Match: tr|A0A2P6QK13|A0A2P6QK13_ROSCH (Putative ribosomal protein S18 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0069871 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.3e-26
Identity = 66/84 (78.57%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 84  QSLHIQNVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSF 143
           Q    +NVRFLANFITEAG+I KRS T+ISAKAQRKVAREIKTARAFGLMPFTTMGTKSF
Sbjct: 182 QKADFRNVRFLANFITEAGVIIKRSKTKISAKAQRKVAREIKTARAFGLMPFTTMGTKSF 241

Query: 144 NFGKSMENLDTDFEYEVFDNDNTD 168
            FGK+MENL  DFEYE +DN   D
Sbjct: 242 VFGKTMENLGEDFEYESYDNPTAD 265

[Close]

BLAST of CsGy6G013710 vs. TrEMBL
Match: tr|A0A2I4FUU8|A0A2I4FUU8_9ROSI (uncharacterized protein LOC109002223 OS=Juglans regia OX=51240 GN=LOC109002223 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.1e-26
Identity = 68/87 (78.16%), Postives = 75/87 (86.21%), Query Frame = 0


Query: 89  QNVRFLANFITEAGIINKRSNTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFNFGKS 148
           +NVRFLANFITEAGII KRS TRISAKAQRKVAREIKTARAFGLMPFTTMGTKSF +G++
Sbjct: 185 RNVRFLANFITEAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVYGET 244

Query: 149 MENLDTDFEYEVFD-NDNTDADGGHPL 175
           ME LD DFEYE ++ +   DADG  PL
Sbjct: 245 MEGLDKDFEYESYNAHIGADADGADPL 271

The following BLAST results are available for this feature:

BLAST of CsGy6G013710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143160.1	5.5e-40	98.86	PREDICTED: uncharacterized protein LOC101213524 [Cucumis sativus]	[more]
KGN47078.1	7.2e-40	100.00	hypothetical protein Csa_6G185280 [Cucumis sativus]	[more]
XP_008464035.1	5.7e-37	95.45	PREDICTED: uncharacterized protein LOC103502018 [Cucumis melo]	[more]
XP_022148322.1	8.8e-30	82.95	uncharacterized protein LOC111017003 [Momordica charantia]	[more]
XP_022986919.1	2.0e-29	82.95	uncharacterized protein LOC111484513 [Cucurbita maxima]	[more]

BLAST of CsGy6G013710 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07210.1	6.9e-29	78.05	Ribosomal protein S18	[more]

BLAST of CsGy6G013710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5NN60\|RS18_ZYMMO	4.3e-04	43.10	30S ribosomal protein S18 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821...	[more]
sp\|P62659\|RS18_THET2	7.4e-04	50.00	30S ribosomal protein S18 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / ...	[more]
sp\|Q5SLQ0\|RS18_THET8	7.4e-04	50.00	30S ribosomal protein S18 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM...	[more]
sp\|Q04TH1\|RS18_LEPBJ	9.6e-04	43.10	30S ribosomal protein S18 OS=Leptospira borgpetersenii serovar Hardjo-bovis (str...	[more]
sp\|Q052K0\|RS18_LEPBL	9.6e-04	43.10	30S ribosomal protein S18 OS=Leptospira borgpetersenii serovar Hardjo-bovis (str...	[more]

BLAST of CsGy6G013710 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KC48\|A0A0A0KC48_CUCSA	4.8e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G185280 PE=4 SV=1	[more]
tr\|A0A1S3CM21\|A0A1S3CM21_CUCME	3.8e-37	95.45	uncharacterized protein LOC103502018 OS=Cucumis melo OX=3656 GN=LOC103502018 PE=...	[more]
tr\|A0A2N9HMY4\|A0A2N9HMY4_FAGSY	6.0e-27	80.46	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41494 PE=3 SV=1	[more]
tr\|A0A2P6QK13\|A0A2P6QK13_ROSCH	2.3e-26	78.57	Putative ribosomal protein S18 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g00698...	[more]
tr\|A0A2I4FUU8\|A0A2I4FUU8_9ROSI	5.1e-26	78.16	uncharacterized protein LOC109002223 OS=Juglans regia OX=51240 GN=LOC109002223 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR036870	Ribosomal_S18_sf
IPR001648	Ribosomal_S18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G013710.1	CsGy6G013710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001648	Ribosomal protein S18	PRINTS	PR00974	RIBOSOMALS18	coord: 93..103 score: 39.67 coord: 125..135 score: 52.07 coord: 111..125 score: 39.6
IPR001648	Ribosomal protein S18	PFAM	PF01084	Ribosomal_S18	coord: 89..133 e-value: 1.7E-13 score: 50.5
IPR001648	Ribosomal protein S18	PRODOM	PD002239		coord: 89..136 e-value: 4.0E-17 score: 214.0
IPR036870	Ribosomal protein S18 superfamily	GENE3D	G3DSA:4.10.640.10		coord: 89..139 e-value: 2.5E-18 score: 67.5
IPR036870	Ribosomal protein S18 superfamily	SUPERFAMILY	SSF46911	Ribosomal protein S18	coord: 78..136
None	No IPR available	PANTHER	PTHR13479:SF44	F10K1.8 PROTEIN	coord: 89..169
None	No IPR available	PANTHER	PTHR13479	30S RIBOSOMAL PROTEIN S18	coord: 89..169

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G013710	Cla013364	Watermelon (97103) v1	cgybwmB479
CsGy6G013710	Csa6G185280	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G013710	CmoCh02G007480	Cucurbita moschata (Rifu)	cgybcmoB788

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G013710	Cucumber (Chinese Long) v3	cgybcucB294
CsGy6G013710	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G013710	Watermelon (97103) v2	cgybwmbB407
CsGy6G013710	Watermelon (97103) v2	cgybwmbB461
CsGy6G013710	Wax gourd	cgybwgoB578
CsGy6G013710	Wax gourd	cgybwgoB610
CsGy6G013710	Cucumber (Gy14) v2	cgybcgybB147
CsGy6G013710	Cucurbita maxima (Rimu)	cgybcmaB789
CsGy6G013710	Cucurbita maxima (Rimu)	cgybcmaB808
CsGy6G013710	Cucurbita moschata (Rifu)	cgybcmoB768
CsGy6G013710	Cucurbita pepo (Zucchini)	cgybcpeB767
CsGy6G013710	Cucurbita pepo (Zucchini)	cgybcpeB795
CsGy6G013710	Cucurbita pepo (Zucchini)	cgybcpeB796
CsGy6G013710	Cucurbita pepo (Zucchini)	cgybcpeB818
CsGy6G013710	Cucurbita pepo (Zucchini)	cgybcpeB855
CsGy6G013710	Bottle gourd (USVL1VR-Ls)	cgyblsiB378
CsGy6G013710	Melon (DHL92) v3.5.1	cgybmeB380
CsGy6G013710	Melon (DHL92) v3.6.1	cgybmedB382
CsGy6G013710	Watermelon (Charleston Gray)	cgybwcgB402
CsGy6G013710	Wild cucumber (PI 183967)	cgybcpiB288
CsGy6G013710	Silver-seed gourd	carcgybB0350
CsGy6G013710	Silver-seed gourd	carcgybB0520