CsGy6G013700 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G013700
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Ribosomal protein S18
Location	Chr6 : 12178281 .. 12179698 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAACCTTTCAGGTTGCTTTGCGAACTCTTGGCGGTGGCTTATCTCGGGGATTAAAGCAACCTTCTGTGCTCAGGAACCTTTCCACAAACGCCGCTCGTGGTAATTTACCATTTGTTTTGGATTTAAATCTATGAATTTTTATTTATACTGTGATTGCTGTAGTTCTTTTGGACTCGGGTGGAAATGCTTCAGGTTTATTCTAAGCTAATGTTGTTCAAATGTGTTTCCGTTTGGATATTGGTCTAGCAAAACCTCATGTTTGGTTGTAAATTTGATAATGTGTTTCAAGGCATGTATTTTATAACTTTCGTGTTTAAAATTTTTAAACAGGTAGTGGGTTTGATGATGATAATAAGGGAAAATTTGATTCGTTTGAGACTGCTGATGATTTTGAACGTCGGATTTTTGGGGGTGGTTCTATGGTGGATTCCGGAAATGATGCTTTCTTTCAGAAGTTTGATAGACTTGGCAAACCTCGTGAAAGAATAGGTTCAAAACTGAGTGGAGGAAACAATTTTCATGCGTTGTATGACCGTGAAGATAATTTTGACACTCTGTCGGATGGGATGGATGGCAAGTTGAAGAAAGCATCCACTTATTTTAAGTTTGATCCAGAGGAAATAGAAAAAGATGATTATACTTTCAGAGCAGATATGTCTTTCTCGCCTGGATCAACATACAATATCAAGGTATGTAGCTGAGCAACTAGTTAGTTTTATACTTGTTAAGAACAAAAGTTTATCCTTCATGGCTTCTATTTTTTATTCCACTGTGAATACATAATGATGCCAATCCAAGCATAGCTAGACACTTATTGCCATAAAAAATTACAGTGCCATTGAGAGAGCACTGAGCAGAGCATCTGTGTTAAAATGATGCTATTATTATTCTGTTACGCATAGAACAAATCGGTTCCTTTTGTGACTTCTTTCAATCTGTTGGTTTGATTCTTTGTCAAGCAGTTTGCAGTTTTGATGAGGAAGGACTTTGTATATTCATTTTCATTTTTCTTTTTATTACCACAACAAAGTTACAATTAAACCACCTAAAACATTACTTTTACCAGAACCAATCCATGTTTCCTTCAAAAGGCATACTGTGTGAGTTATGGCCAACTGTGCCTGGATTACCTGTGATGGATATGAACTTCACTATATTATCATTTTATTGCTGCTTGATACCTCTCTGCACCTTCTATAACTGATGTTGTGTTATGTTACCCTTGAGTACTTTTGAATTTATGCAGGATCTGGATCTAACAAAGCCAGGTTTTCGTAAACCTCCCAAAAGGGTTGAGTTTCAGGTGACAACGGAGGAGGCTTTAAGAAAAGCTGATTTCAGGGTGAGCATTCCTGCATTTCATTTACCTTTCCGTTTTACAAATCCCGTTTCTCATTTCATTATGGATACCTAG

mRNA sequence

ATGAGAACCTTTCAGGTTGCTTTGCGAACTCTTGGCGGTGGCTTATCTCGGGGATTAAAGCAACCTTCTGTGCTCAGGAACCTTTCCACAAACGCCGCTCGTGGTAGTGGGTTTGATGATGATAATAAGGGAAAATTTGATTCGTTTGAGACTGCTGATGATTTTGAACGTCGGATTTTTGGGGGTGGTTCTATGGTGGATTCCGGAAATGATGCTTTCTTTCAGAAGTTTGATAGACTTGGCAAACCTCGTGAAAGAATAGGTTCAAAACTGAGTGGAGGAAACAATTTTCATGCGTTGTATGACCGTGAAGATAATTTTGACACTCTGTCGGATGGGATGGATGGCAAGTTGAAGAAAGCATCCACTTATTTTAAGTTTGATCCAGAGGAAATAGAAAAAGATGATTATACTTTCAGAGCAGATATGTCTTTCTCGCCTGGATCAACATACAATATCAAGGATCTGGATCTAACAAAGCCAGGTTTTCGTAAACCTCCCAAAAGGGTTGAGTTTCAGGTGACAACGGAGGAGGCTTTAAGAAAAGCTGATTTCAGGGTGAGCATTCCTGCATTTCATTTACCTTTCCGTTTTACAAATCCCGTTTCTCATTTCATTATGGATACCTAG

Coding sequence (CDS)

ATGAGAACCTTTCAGGTTGCTTTGCGAACTCTTGGCGGTGGCTTATCTCGGGGATTAAAGCAACCTTCTGTGCTCAGGAACCTTTCCACAAACGCCGCTCGTGGTAGTGGGTTTGATGATGATAATAAGGGAAAATTTGATTCGTTTGAGACTGCTGATGATTTTGAACGTCGGATTTTTGGGGGTGGTTCTATGGTGGATTCCGGAAATGATGCTTTCTTTCAGAAGTTTGATAGACTTGGCAAACCTCGTGAAAGAATAGGTTCAAAACTGAGTGGAGGAAACAATTTTCATGCGTTGTATGACCGTGAAGATAATTTTGACACTCTGTCGGATGGGATGGATGGCAAGTTGAAGAAAGCATCCACTTATTTTAAGTTTGATCCAGAGGAAATAGAAAAAGATGATTATACTTTCAGAGCAGATATGTCTTTCTCGCCTGGATCAACATACAATATCAAGGATCTGGATCTAACAAAGCCAGGTTTTCGTAAACCTCCCAAAAGGGTTGAGTTTCAGGTGACAACGGAGGAGGCTTTAAGAAAAGCTGATTTCAGGGTGAGCATTCCTGCATTTCATTTACCTTTCCGTTTTACAAATCCCGTTTCTCATTTCATTATGGATACCTAG

Protein sequence

MRTFQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGKFDSFETADDFERRIFGGGSMVDSGNDAFFQKFDRLGKPRERIGSKLSGGNNFHALYDREDNFDTLSDGMDGKLKKASTYFKFDPEEIEKDDYTFRADMSFSPGSTYNIKDLDLTKPGFRKPPKRVEFQVTTEEALRKADFRVSIPAFHLPFRFTNPVSHFIMDT

Homology

[Close]

BLAST of CsGy6G013700 vs. NCBI nr
Match: KGN47077.1 (hypothetical protein Csa_6G185270 [Cucumis sativus])

HSP 1 Score: 424.1 bits (1089), Expect = 2.8e-115
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MRTFQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGKFDSFETADDFERRIF 60
           MRTFQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGKFDSFETADDFERRIF
Sbjct: 1   MRTFQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGKFDSFETADDFERRIF 60

Query: 61  GGGSMVDSGNDAFFQKFDRLGKPRERIGSKLSGGNNFHALYDREDNFDTLSDGMDGKLKK 120
           GGGSMVDSGNDAFFQKFDRLGKPRERIGSKLSGGNNFHALYDREDNFDTLSDGMDGKLKK
Sbjct: 61  GGGSMVDSGNDAFFQKFDRLGKPRERIGSKLSGGNNFHALYDREDNFDTLSDGMDGKLKK 120

Query: 121 ASTYFKFDPEEIEKDDYTFRADMSFSPGSTYNIKDLDLTKPGFRKPPKRVEFQVTTEEAL 180
           ASTYFKFDPEEIEKDDYTFRADMSFSPGSTYNIKDLDLTKPGFRKPPKRVEFQVTTEEAL
Sbjct: 121 ASTYFKFDPEEIEKDDYTFRADMSFSPGSTYNIKDLDLTKPGFRKPPKRVEFQVTTEEAL 180

Query: 181 RKADFRVSIPAFHLPFRFTNPVSHFIMDT 210
           RKADFRVSIPAFHLPFRFTNPVSHFIMDT
Sbjct: 181 RKADFRVSIPAFHLPFRFTNPVSHFIMDT 209

[Close]

BLAST of CsGy6G013700 vs. NCBI nr
Match: XP_004143160.1 (PREDICTED: uncharacterized protein LOC101213524 [Cucumis sativus])

HSP 1 Score: 375.9 bits (964), Expect = 8.7e-101
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MRTFQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGKFDSFETADDFERRIF 60
           MRTFQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGKFDSFETADDFERRIF
Sbjct: 1   MRTFQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGKFDSFETADDFERRIF 60

Query: 61  GGGSMVDSGNDAFFQKFDRLGKPRERIGSKLSGGNNFHALYDREDNFDTLSDGMDGKLKK 120
           GGGSMVDSGNDAFFQKFDRLGKPRERIGSKLSGGNNFHALYDREDNFDTLSDGMDGKLKK
Sbjct: 61  GGGSMVDSGNDAFFQKFDRLGKPRERIGSKLSGGNNFHALYDREDNFDTLSDGMDGKLKK 120

Query: 121 ASTYFKFDPEEIEKDDYTFRADMSFSPGSTYNIKDLDLTKPGFRKPPKRVEFQVTTEEAL 180
           ASTYFKFDPEEIEKDDYTFRADMSFSPGSTYNIKDLDLTKPGFRKPPKRVEFQVTTEEAL
Sbjct: 121 ASTYFKFDPEEIEKDDYTFRADMSFSPGSTYNIKDLDLTKPGFRKPPKRVEFQVTTEEAL 180

Query: 181 RKADFR 187
           RKADFR
Sbjct: 181 RKADFR 186

[Close]

BLAST of CsGy6G013700 vs. NCBI nr
Match: XP_008464035.1 (PREDICTED: uncharacterized protein LOC103502018 [Cucumis melo])

HSP 1 Score: 330.9 bits (847), Expect = 3.2e-87
Identity = 166/186 (89.25%), Postives = 171/186 (91.94%), Query Frame = 0


Query: 1   MRTFQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGKFDSFETADDFERRIF 60
           MRT QVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKG  DSFETADDFERRIF
Sbjct: 1   MRTVQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGNPDSFETADDFERRIF 60

Query: 61  GGGSMVDSGNDAFFQKFDRLGKPRERIGSKLSGGNNFHALYDREDNFDTLSDGMDGKLKK 120
           GG SM  SGNDAFF+KFDRLGKPRERIGSKLSGGNNF AL D EDNFDTLSDGMDGKLKK
Sbjct: 61  GGVSMAGSGNDAFFEKFDRLGKPRERIGSKLSGGNNFQALRDLEDNFDTLSDGMDGKLKK 120

Query: 121 ASTYFKFDPEEIEKDDYTFRADMSFSPGSTYNIKDLDLTKPGFRKPPKRVEFQVTTEEAL 180
           ASTYF+ DP+EIEKDDY FRADMSF PGSTY +KDLDLT+PG RKPPKRV FQVTTEEAL
Sbjct: 121 ASTYFEVDPDEIEKDDYAFRADMSFRPGSTYTVKDLDLTRPGVRKPPKRVGFQVTTEEAL 180

Query: 181 RKADFR 187
           RKADFR
Sbjct: 181 RKADFR 186

[Close]

BLAST of CsGy6G013700 vs. NCBI nr
Match: XP_022943865.1 (uncharacterized protein LOC111448465 [Cucurbita moschata])

HSP 1 Score: 307.0 bits (785), Expect = 4.9e-80
Identity = 156/186 (83.87%), Postives = 165/186 (88.71%), Query Frame = 0


Query: 1   MRTFQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGKFDSFETADDFERRIF 60
           MRT QVALRTLGGGLSR  KQPSVLRNLSTNAAR SGFDD  KGK DSFE+ADDFERRIF
Sbjct: 1   MRTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDD--KGKPDSFESADDFERRIF 60

Query: 61  GGGSMVDSGNDAFFQKFDRLGKPRERIGSKLSGGNNFHALYDREDNFDTLSDGMDGKLKK 120
           GG S  DSGNDAFF+K DR+GKPRERIGS+LSGGNNF +LY  +DN +TLSDGMDGKLKK
Sbjct: 61  GGVSTGDSGNDAFFEKLDRIGKPRERIGSRLSGGNNFQSLYGLDDNLNTLSDGMDGKLKK 120

Query: 121 ASTYFKFDPEEIEKDDYTFRADMSFSPGSTYNIKDLDLTKPGFRKPPKRVEFQVTTEEAL 180
           ASTYF+FD EEI KDDYTFRADMSF PGSTY +KDLDLTKPG RKPPKRVEFQVTTEE L
Sbjct: 121 ASTYFEFDTEEIAKDDYTFRADMSFKPGSTYEVKDLDLTKPGVRKPPKRVEFQVTTEEVL 180

Query: 181 RKADFR 187
           RKADFR
Sbjct: 181 RKADFR 184

[Close]

BLAST of CsGy6G013700 vs. NCBI nr
Match: XP_022986919.1 (uncharacterized protein LOC111484513 [Cucurbita maxima])

HSP 1 Score: 307.0 bits (785), Expect = 4.9e-80
Identity = 158/186 (84.95%), Postives = 164/186 (88.17%), Query Frame = 0


Query: 1   MRTFQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGKFDSFETADDFERRIF 60
           M T QVALRTLGGGLSR  KQPSVLRNLSTNAAR SGFDD  KGK DSFE+ADDFERRIF
Sbjct: 1   MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDD--KGKPDSFESADDFERRIF 60

Query: 61  GGGSMVDSGNDAFFQKFDRLGKPRERIGSKLSGGNNFHALYDREDNFDTLSDGMDGKLKK 120
           GG S  DSGNDAFF+K DRLGKPRERIGS+LSGGNNF ALY  +DN +TLSDGMDGKLKK
Sbjct: 61  GGVSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKK 120

Query: 121 ASTYFKFDPEEIEKDDYTFRADMSFSPGSTYNIKDLDLTKPGFRKPPKRVEFQVTTEEAL 180
           ASTYF+FD EEI KDDYTFRADMSF PGSTY IKDLDLTKPG RKPPKRVEFQVTTEE L
Sbjct: 121 ASTYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVL 180

Query: 181 RKADFR 187
           RKADFR
Sbjct: 181 RKADFR 184

[Close]

BLAST of CsGy6G013700 vs. TAIR10
Match: AT1G07210.1 (Ribosomal protein S18)

HSP 1 Score: 65.1 bits (157), Expect = 5.9e-11
Identity = 56/173 (32.37%), Postives = 85/173 (49.13%), Query Frame = 0


Query: 21  QPSVLRNLSTNAARGSGFDDDNKGKFDSFETADDFERRIFGGGSMVDSGNDAFFQKFDRL 80
           +P V R+L+TNA       + N+  FDS +  D     +FG  +  D  ++ FFQ   + 
Sbjct: 21  RPIVSRSLATNANED---PNQNRSSFDSSDNLDS----LFGDYTGNDEKSNDFFQHLSKA 80

Query: 81  GKPRERI-------GSKLSGGNNFHALYDREDNFDTLSDGMDGKLKKASTYFKFDPEEIE 140
            K +          GS+ SGG +      +++ FD  SDG+DGKLK+A+  +  D  +  
Sbjct: 81  EKDKRDFNGYNRSGGSRYSGGGSM----SKDETFDPSSDGVDGKLKEAALAYNMDEGDGF 140

Query: 141 KDDYTFRADMSFSPGSTYNIKDLDLTKPGFRKPPKRVEFQVTTEEALRKADFR 187
           K +Y+FR D + S G   N   +       R+   + E  VTTEE L+ ADFR
Sbjct: 141 K-EYSFRPDFNNSWGMN-NFPRMQKQMQNPRQNNSKSE--VTTEEVLKNADFR 178

[Close]

BLAST of CsGy6G013700 vs. TrEMBL
Match: tr|A0A0A0KFA0|A0A0A0KFA0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G185270 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 1.8e-115
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MRTFQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGKFDSFETADDFERRIF 60
           MRTFQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGKFDSFETADDFERRIF
Sbjct: 1   MRTFQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGKFDSFETADDFERRIF 60

Query: 61  GGGSMVDSGNDAFFQKFDRLGKPRERIGSKLSGGNNFHALYDREDNFDTLSDGMDGKLKK 120
           GGGSMVDSGNDAFFQKFDRLGKPRERIGSKLSGGNNFHALYDREDNFDTLSDGMDGKLKK
Sbjct: 61  GGGSMVDSGNDAFFQKFDRLGKPRERIGSKLSGGNNFHALYDREDNFDTLSDGMDGKLKK 120

Query: 121 ASTYFKFDPEEIEKDDYTFRADMSFSPGSTYNIKDLDLTKPGFRKPPKRVEFQVTTEEAL 180
           ASTYFKFDPEEIEKDDYTFRADMSFSPGSTYNIKDLDLTKPGFRKPPKRVEFQVTTEEAL
Sbjct: 121 ASTYFKFDPEEIEKDDYTFRADMSFSPGSTYNIKDLDLTKPGFRKPPKRVEFQVTTEEAL 180

Query: 181 RKADFRVSIPAFHLPFRFTNPVSHFIMDT 210
           RKADFRVSIPAFHLPFRFTNPVSHFIMDT
Sbjct: 181 RKADFRVSIPAFHLPFRFTNPVSHFIMDT 209

[Close]

BLAST of CsGy6G013700 vs. TrEMBL
Match: tr|A0A1S3CM21|A0A1S3CM21_CUCME (uncharacterized protein LOC103502018 OS=Cucumis melo OX=3656 GN=LOC103502018 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 2.1e-87
Identity = 166/186 (89.25%), Postives = 171/186 (91.94%), Query Frame = 0


Query: 1   MRTFQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGKFDSFETADDFERRIF 60
           MRT QVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKG  DSFETADDFERRIF
Sbjct: 1   MRTVQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGNPDSFETADDFERRIF 60

Query: 61  GGGSMVDSGNDAFFQKFDRLGKPRERIGSKLSGGNNFHALYDREDNFDTLSDGMDGKLKK 120
           GG SM  SGNDAFF+KFDRLGKPRERIGSKLSGGNNF AL D EDNFDTLSDGMDGKLKK
Sbjct: 61  GGVSMAGSGNDAFFEKFDRLGKPRERIGSKLSGGNNFQALRDLEDNFDTLSDGMDGKLKK 120

Query: 121 ASTYFKFDPEEIEKDDYTFRADMSFSPGSTYNIKDLDLTKPGFRKPPKRVEFQVTTEEAL 180
           ASTYF+ DP+EIEKDDY FRADMSF PGSTY +KDLDLT+PG RKPPKRV FQVTTEEAL
Sbjct: 121 ASTYFEVDPDEIEKDDYAFRADMSFRPGSTYTVKDLDLTRPGVRKPPKRVGFQVTTEEAL 180

Query: 181 RKADFR 187
           RKADFR
Sbjct: 181 RKADFR 186

[Close]

BLAST of CsGy6G013700 vs. TrEMBL
Match: tr|A0A2P4IY11|A0A2P4IY11_QUESU (30s ribosomal protein s18 OS=Quercus suber OX=58331 GN=CFP56_08708 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.4e-51
Identity = 110/186 (59.14%), Postives = 135/186 (72.58%), Query Frame = 0


Query: 1   MRTFQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGKFDSFETADDFERRIF 60
           M+    A R+   GL R  + P ++R LSTNA  GSG  D    + DS E+AD+FERRIF
Sbjct: 1   MKIIHFAFRSCHNGLLRRFQLPHIVRTLSTNATAGSGVGDK---QTDSIESADEFERRIF 60

Query: 61  GGGSMVDSGNDAFFQKFDRLGKPRERIGSKLSGGNNFHALYDREDNFDTLSDGMDGKLKK 120
           G  S  +S +DAFF+K DRLGK R+R GS++  G+N   L   +++F+TLSDGMDGKLKK
Sbjct: 61  GDFSGGNSKSDAFFEKLDRLGKARDRSGSRMGEGSNSQILDGLDESFNTLSDGMDGKLKK 120

Query: 121 ASTYFKFDPEEIEKDDYTFRADMSFSPGSTYNIKDLDLTKPGFRKPPKRVEFQVTTEEAL 180
           A+TYF+FD +EIEKDDY+FR DM+F  G TY  KDLDLTKPG RKP KR EF+VTTEE L
Sbjct: 121 AATYFEFDEQEIEKDDYSFRPDMTFRVGMTYETKDLDLTKPGVRKPFKRTEFEVTTEEVL 180

Query: 181 RKADFR 187
           RKADFR
Sbjct: 181 RKADFR 183

[Close]

BLAST of CsGy6G013700 vs. TrEMBL
Match: tr|A0A2I4FUU8|A0A2I4FUU8_9ROSI (uncharacterized protein LOC109002223 OS=Juglans regia OX=51240 GN=LOC109002223 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.1e-46
Identity = 104/186 (55.91%), Postives = 132/186 (70.97%), Query Frame = 0


Query: 1   MRTFQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGKFDSFETADDFERRIF 60
           M+  + A+ +   GLS    +P  +R LSTNA  G    DDNK + +SFE+AD+FERRIF
Sbjct: 1   MKAVRFAVHSCRTGLSCRFPRPYTVRTLSTNATSGGSGIDDNK-QSNSFESADEFERRIF 60

Query: 61  GGGSMVDSGNDAFFQKFDRLGKPRERIGSKLSGGNNFHALYDREDNFDTLSDGMDGKLKK 120
           G  S  D+ +++ F   DRLGK R+R G ++S G+NF  L   +++F+TLSDGMDGKLKK
Sbjct: 61  GDFSGGDAKSNSIFGMLDRLGKGRDRSGYRVSEGSNFQTLDGLDESFNTLSDGMDGKLKK 120

Query: 121 ASTYFKFDPEEIEKDDYTFRADMSFSPGSTYNIKDLDLTKPGFRKPPKRVEFQVTTEEAL 180
           A+TYF FD EEIEKDDY FRADM+F P  TY  KDLDL KPG  +P K +EFQVTT+E L
Sbjct: 121 AATYFSFDTEEIEKDDYKFRADMNFKPRMTYETKDLDLRKPGVWRPSKTLEFQVTTKEVL 180

Query: 181 RKADFR 187
           +KADFR
Sbjct: 181 KKADFR 185

[Close]

BLAST of CsGy6G013700 vs. TrEMBL
Match: tr|A0A1U8QAN4|A0A1U8QAN4_NELNU (30S ribosomal protein S18, chloroplastic OS=Nelumbo nucifera OX=4432 GN=LOC104611118 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.4e-45
Identity = 103/189 (54.50%), Postives = 135/189 (71.43%), Query Frame = 0


Query: 1   MRTFQVALRTLGGG--LSRGLKQPSVLRNLSTNAARGSGFDDDNKGKFDSFETADDFERR 60
           M+  +V LR++ G   LSR   +P + + L T++  G+  +D+  G  +SFE+ADDFERR
Sbjct: 1   MKLIRVTLRSINGSSFLSRQCHRPWMAKALFTSSTSGNEINDNGTG--NSFESADDFERR 60

Query: 61  IFGGGSMVDSGNDAFFQKFDRLGKPRERIGSKLSGGNNFHALYD-REDNFDTLSDGMDGK 120
           IF G S   S NDAFFQK DRL K   R G    GG+N    +D  +++F+TLSDGMDGK
Sbjct: 61  IFSGFSDSRSNNDAFFQKLDRLEKAHGRSGFGSKGGSNNSEFFDGLDESFNTLSDGMDGK 120

Query: 121 LKKASTYFKFDPEEIEKDDYTFRADMSFSPGSTYNIKDLDLTKPGFRKPPKRVEFQVTTE 180
           LKKA+TYF+F+P+EI  DDY+FRAD++F PG TY++KDLDLT+PG  KP KR +F+ TTE
Sbjct: 121 LKKAATYFEFNPDEITGDDYSFRADVTFRPGMTYDVKDLDLTRPGVPKPFKRSQFETTTE 180

Query: 181 EALRKADFR 187
           E LRKADFR
Sbjct: 181 EVLRKADFR 187

The following BLAST results are available for this feature:

BLAST of CsGy6G013700 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47077.1	2.8e-115	100.00	hypothetical protein Csa_6G185270 [Cucumis sativus]	[more]
XP_004143160.1	8.7e-101	100.00	PREDICTED: uncharacterized protein LOC101213524 [Cucumis sativus]	[more]
XP_008464035.1	3.2e-87	89.25	PREDICTED: uncharacterized protein LOC103502018 [Cucumis melo]	[more]
XP_022943865.1	4.9e-80	83.87	uncharacterized protein LOC111448465 [Cucurbita moschata]	[more]
XP_022986919.1	4.9e-80	84.95	uncharacterized protein LOC111484513 [Cucurbita maxima]	[more]

BLAST of CsGy6G013700 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07210.1	5.9e-11	32.37	Ribosomal protein S18	[more]

BLAST of CsGy6G013700 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G013700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFA0\|A0A0A0KFA0_CUCSA	1.8e-115	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G185270 PE=4 SV=1	[more]
tr\|A0A1S3CM21\|A0A1S3CM21_CUCME	2.1e-87	89.25	uncharacterized protein LOC103502018 OS=Cucumis melo OX=3656 GN=LOC103502018 PE=...	[more]
tr\|A0A2P4IY11\|A0A2P4IY11_QUESU	5.4e-51	59.14	30s ribosomal protein s18 OS=Quercus suber OX=58331 GN=CFP56_08708 PE=3 SV=1	[more]
tr\|A0A2I4FUU8\|A0A2I4FUU8_9ROSI	1.1e-46	55.91	uncharacterized protein LOC109002223 OS=Juglans regia OX=51240 GN=LOC109002223 P...	[more]
tr\|A0A1U8QAN4\|A0A1U8QAN4_NELNU	3.4e-45	54.50	30S ribosomal protein S18, chloroplastic OS=Nelumbo nucifera OX=4432 GN=LOC10461...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G013700.1	CsGy6G013700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13479:SF44	F10K1.8 PROTEIN	coord: 9..186
None	No IPR available	PANTHER	PTHR13479	30S RIBOSOMAL PROTEIN S18	coord: 9..186

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G013700	Cla013365	Watermelon (97103) v1	cgybwmB479
CsGy6G013700	Csa6G185270	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G013700	MELO3C025845	Melon (DHL92) v3.5.1	cgybmeB380
CsGy6G013700	ClCG02G019520	Watermelon (Charleston Gray)	cgybwcgB402
CsGy6G013700	CSPI06G13790	Wild cucumber (PI 183967)	cgybcpiB288
CsGy6G013700	CmaCh20G003440	Cucurbita maxima (Rimu)	cgybcmaB789
CsGy6G013700	CmaCh02G007420	Cucurbita maxima (Rimu)	cgybcmaB808
CsGy6G013700	CmoCh20G003690	Cucurbita moschata (Rifu)	cgybcmoB768
CsGy6G013700	CmoCh02G007470	Cucurbita moschata (Rifu)	cgybcmoB788
CsGy6G013700	Lsi10G014370	Bottle gourd (USVL1VR-Ls)	cgyblsiB378
CsGy6G013700	Cp4.1LG05g09740	Cucurbita pepo (Zucchini)	cgybcpeB855
CsGy6G013700	Cp4.1LG16g06660	Cucurbita pepo (Zucchini)	cgybcpeB767
CsGy6G013700	MELO3C025845.2	Melon (DHL92) v3.6.1	cgybmedB382
CsGy6G013700	CsaV3_6G016190	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G013700	Cla97C02G045530	Watermelon (97103) v2	cgybwmbB407
CsGy6G013700	Bhi10G000636	Wax gourd	cgybwgoB578
CsGy6G013700	Carg03365	Silver-seed gourd	carcgybB0350
CsGy6G013700	Carg23854	Silver-seed gourd	carcgybB0520

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G013700	Wax gourd	cgybwgoB610
CsGy6G013700	Cucumber (Gy14) v2	cgybcgybB147
CsGy6G013700	Cucurbita pepo (Zucchini)	cgybcpeB795
CsGy6G013700	Cucurbita pepo (Zucchini)	cgybcpeB796
CsGy6G013700	Cucurbita pepo (Zucchini)	cgybcpeB818
CsGy6G013700	Cucumber (Chinese Long) v3	cgybcucB294
CsGy6G013700	Watermelon (97103) v2	cgybwmbB461