CsGy6G012600 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G012600
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	ABSCISIC ACID-INSENSITIVE 5-like protein 1
Location	Chr6 : 10928179 .. 10928673 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCACCCAATGTGTTGGGGAACCATGTGGTAACATTTCAATTGAGAAATGTGAAGCCTCGAAGACTGATTGGGGTGAGCCTAAGAAGAAGAGGAGGATTATTGATGGTTCTACTAAAGTTATGTTGCAGAGGAGACAGGGGAGGAATATGATATTAGGTATAACAAATATTGTTAGTTTATTATGGTTAGGTACACTGATTTAGTCTTTTTGTTATATCTTTATTGTGTATTTATAGTGGGTTTGTTGAGAAGCTTATTTACCTCAAATATTATCGAATTGTATTAGTGGAGGTTAGTTGAGGACTTTTAAACATATGGAATGTCGTTTTCTTTACCATTAAAATTTGTTTACACTTGAAGTTGTAGCACTACAAGAGAATGGATTTTTTTTTTTTTTTTTTTATGTTGTAACAGACATTGTTAATGAGAGAAAACACCAACGTCGTAAAATGCACGTCAGAATAAAGGTTGCAAGGTCGATGCAACCTTAA

mRNA sequence

ATGCTCACCCAATGTGTTGGGGAACCATGTGGTAACATTTCAATTGAGAAATGTGAAGCCTCGAAGACTGATTGGGGTGAGCCTAAGAAGAAGAGGAGGATTATTGATGGTTCTACTAAAGTTATGTTGCAGAGGAGACAGGGGAGGAATATGATATTAGACATTGTTAATGAGAGAAAACACCAACGTCGTAAAATGCACGTCAGAATAAAGGTTGCAAGGTCGATGCAACCTTAA

Coding sequence (CDS)

ATGCTCACCCAATGTGTTGGGGAACCATGTGGTAACATTTCAATTGAGAAATGTGAAGCCTCGAAGACTGATTGGGGTGAGCCTAAGAAGAAGAGGAGGATTATTGATGGTTCTACTAAAGTTATGTTGCAGAGGAGACAGGGGAGGAATATGATATTAGACATTGTTAATGAGAGAAAACACCAACGTCGTAAAATGCACGTCAGAATAAAGGTTGCAAGGTCGATGCAACCTTAA

Protein sequence

MLTQCVGEPCGNISIEKCEASKTDWGEPKKKRRIIDGSTKVMLQRRQGRNMILDIVNERKHQRRKMHVRIKVARSMQP

Homology

[Close]

BLAST of CsGy6G012600 vs. NCBI nr
Match: KGN46952.1 (hypothetical protein Csa_6G152380 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 3.2e-08
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 1   MLTQCVGEPCGNISIEKCEASKTDWGEPKKKRRIIDGSTKVMLQRRQGRNM 52
           M TQ VGEPC +IS EKCEA  T W EP  K+RIIDGST+V+LQR Q R M
Sbjct: 196 MSTQSVGEPCDDISNEKCEALMTGWVEPNNKKRIIDGSTEVVLQRIQRRMM 246

[Close]

BLAST of CsGy6G012600 vs. NCBI nr
Match: XP_004149281.2 (PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 1 [Cucumis sativus] >KGN46957.1 hypothetical protein Csa_6G152920 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 3.6e-07
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 1   MLTQCVGEPCGNISIEKCEASKTDWGEPKKKRRIIDGSTKVMLQRRQGRNMILDIVNERK 60
           MLTQ VGEP  N SI+KC+   TDW EP  K+RIIDG T+V++QRRQ R MI +  +  +
Sbjct: 213 MLTQSVGEPSDNSSIQKCQGLMTDWVEPSNKKRIIDGPTEVVVQRRQ-RRMIKNRESAAR 272

Query: 61  HQRRKMHVRIKV 73
            + RK    +++
Sbjct: 273 SRARKQAYTVEL 283

[Close]

BLAST of CsGy6G012600 vs. NCBI nr
Match: XP_008458572.2 (PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 1 [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-06
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 1   MLTQCVGEPCGNISIEKCEASKTDWGEPKKKRRIIDGSTKVMLQRRQGRNMILDIVNERK 60
           ML Q VGEP  N SI+KC+   TDW EP  K+RIIDG T+V++QRRQ R MI +  +  +
Sbjct: 213 MLNQSVGEPSDNSSIQKCQGLMTDWVEPSNKKRIIDGPTEVVVQRRQ-RRMIKNRESAAR 272

Query: 61  HQRRKMHVRIKV 73
            + RK    +++
Sbjct: 273 SRARKQAYTVEL 283

[Close]

BLAST of CsGy6G012600 vs. NCBI nr
Match: XP_022943717.1 (protein ABSCISIC ACID-INSENSITIVE 5-like [Cucurbita moschata])

HSP 1 Score: 57.0 bits (136), Expect = 3.3e-05
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 1   MLTQCVGEPCGNISIEKCEASKTDWGEPKKKRRIIDGSTKVMLQRRQGRNMILDIVNERK 60
           MLT  VGEP  + SI+KC+ S TDW EP  K+RI+DG T+V++QRRQ R MI +  +  +
Sbjct: 213 MLTPSVGEPSDSSSIQKCQ-SLTDWAEPSNKKRIVDGPTEVVVQRRQ-RRMIKNRESAAR 272

Query: 61  HQRRKMHVRIKVARSMQ 78
            + RK    +++   ++
Sbjct: 273 SRARKQAYTVELEAELK 287

[Close]

BLAST of CsGy6G012600 vs. NCBI nr
Match: XP_022985788.1 (ABSCISIC ACID-INSENSITIVE 5-like protein 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 57.0 bits (136), Expect = 3.3e-05
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 1   MLTQCVGEPCGNISIEKCEASKTDWGEPKKKRRIIDGSTKVMLQRRQGRNMILDIVNERK 60
           MLT  VGEP  + SI+KC+ S TDW EP  K+RI+DG T+V++QRRQ R MI +  +  +
Sbjct: 214 MLTPSVGEPSDSSSIQKCQ-SLTDWAEPSNKKRIVDGPTEVVVQRRQ-RRMIKNRESAAR 273

Query: 61  HQRRKMHVRIKVARSMQ 78
            + RK    +++   ++
Sbjct: 274 SRARKQAYTVELESELK 288

[Close]

BLAST of CsGy6G012600 vs. TrEMBL
Match: tr|A0A0A0KEX6|A0A0A0KEX6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G152380 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-08
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 1   MLTQCVGEPCGNISIEKCEASKTDWGEPKKKRRIIDGSTKVMLQRRQGRNM 52
           M TQ VGEPC +IS EKCEA  T W EP  K+RIIDGST+V+LQR Q R M
Sbjct: 196 MSTQSVGEPCDDISNEKCEALMTGWVEPNNKKRIIDGSTEVVLQRIQRRMM 246

[Close]

BLAST of CsGy6G012600 vs. TrEMBL
Match: tr|A0A0A0KEY1|A0A0A0KEY1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G152920 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.3e-07
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 1   MLTQCVGEPCGNISIEKCEASKTDWGEPKKKRRIIDGSTKVMLQRRQGRNMILDIVNERK 60
           MLTQ VGEP  N SI+KC+   TDW EP  K+RIIDG T+V++QRRQ R MI +  +  +
Sbjct: 213 MLTQSVGEPSDNSSIQKCQGLMTDWVEPSNKKRIIDGPTEVVVQRRQ-RRMIKNRESAAR 272

Query: 61  HQRRKMHVRIKV 73
            + RK    +++
Sbjct: 273 SRARKQAYTVEL 283

[Close]

BLAST of CsGy6G012600 vs. TrEMBL
Match: tr|A0A1S3C9E3|A0A1S3C9E3_CUCME (ABSCISIC ACID-INSENSITIVE 5-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103497935 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.9e-07
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 1   MLTQCVGEPCGNISIEKCEASKTDWGEPKKKRRIIDGSTKVMLQRRQGRNMILDIVNERK 60
           ML Q VGEP  N SI+KC+   TDW EP  K+RIIDG T+V++QRRQ R MI +  +  +
Sbjct: 213 MLNQSVGEPSDNSSIQKCQGLMTDWVEPSNKKRIIDGPTEVVVQRRQ-RRMIKNRESAAR 272

Query: 61  HQRRKMHVRIKV 73
            + RK    +++
Sbjct: 273 SRARKQAYTVEL 283

The following BLAST results are available for this feature:

BLAST of CsGy6G012600 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46952.1	3.2e-08	66.67	hypothetical protein Csa_6G152380 [Cucumis sativus]	[more]
XP_004149281.2	3.6e-07	48.61	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 1 [Cucumis sativus] >KGN4695...	[more]
XP_008458572.2	1.3e-06	47.22	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 1 [Cucumis melo]	[more]
XP_022943717.1	3.3e-05	42.86	protein ABSCISIC ACID-INSENSITIVE 5-like [Cucurbita moschata]	[more]
XP_022985788.1	3.3e-05	42.86	ABSCISIC ACID-INSENSITIVE 5-like protein 1 isoform X1 [Cucurbita maxima]	[more]

BLAST of CsGy6G012600 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy6G012600 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G012600 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KEX6\|A0A0A0KEX6_CUCSA	2.1e-08	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G152380 PE=4 SV=1	[more]
tr\|A0A0A0KEY1\|A0A0A0KEY1_CUCSA	2.3e-07	48.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G152920 PE=4 SV=1	[more]
tr\|A0A1S3C9E3\|A0A1S3C9E3_CUCME	8.9e-07	47.22	ABSCISIC ACID-INSENSITIVE 5-like protein 1 OS=Cucumis melo OX=3656 GN=LOC1034979...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G012600.1	CsGy6G012600.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G012600	MELO3C021423	Melon (DHL92) v3.5.1	cgybmeB365
CsGy6G012600	MELO3C021421.2	Melon (DHL92) v3.6.1	cgybmedB366

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G012600	Wild cucumber (PI 183967)	cgybcpiB288
CsGy6G012600	Wild cucumber (PI 183967)	cgybcpiB290
CsGy6G012600	Silver-seed gourd	carcgybB0265
CsGy6G012600	Silver-seed gourd	carcgybB0422
CsGy6G012600	Silver-seed gourd	carcgybB0915
CsGy6G012600	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G012600	Cucumber (Chinese Long) v3	cgybcucB299
CsGy6G012600	Watermelon (97103) v2	cgybwmbB399
CsGy6G012600	Watermelon (97103) v2	cgybwmbB406
CsGy6G012600	Wax gourd	cgybwgoB579
CsGy6G012600	Cucumber (Gy14) v2	cgybcgybB102
CsGy6G012600	Cucurbita maxima (Rimu)	cgybcmaB730
CsGy6G012600	Cucurbita maxima (Rimu)	cgybcmaB802
CsGy6G012600	Cucurbita maxima (Rimu)	cgybcmaB820
CsGy6G012600	Cucurbita maxima (Rimu)	cgybcmaB862
CsGy6G012600	Cucurbita moschata (Rifu)	cgybcmoB715
CsGy6G012600	Cucurbita moschata (Rifu)	cgybcmoB780
CsGy6G012600	Cucurbita moschata (Rifu)	cgybcmoB799
CsGy6G012600	Cucurbita moschata (Rifu)	cgybcmoB844
CsGy6G012600	Cucurbita pepo (Zucchini)	cgybcpeB758
CsGy6G012600	Cucurbita pepo (Zucchini)	cgybcpeB811
CsGy6G012600	Cucurbita pepo (Zucchini)	cgybcpeB827
CsGy6G012600	Cucurbita pepo (Zucchini)	cgybcpeB856
CsGy6G012600	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G012600	Bottle gourd (USVL1VR-Ls)	cgyblsiB377
CsGy6G012600	Bottle gourd (USVL1VR-Ls)	cgyblsiB399
CsGy6G012600	Melon (DHL92) v3.5.1	cgybmeB425
CsGy6G012600	Watermelon (Charleston Gray)	cgybwcgB393
CsGy6G012600	Watermelon (Charleston Gray)	cgybwcgB401
CsGy6G012600	Watermelon (Charleston Gray)	cgybwcgB427
CsGy6G012600	Watermelon (97103) v1	cgybwmB424
CsGy6G012600	Watermelon (97103) v1	cgybwmB473
CsGy6G012600	Watermelon (97103) v1	cgybwmB478