CsGy6G011510 (gene) Cucumber (Gy14) v2

NameCsGy6G011510
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr6 : 10007940 .. 10008743 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCACTTTCCAGGTACAAAGTTAGTAGCATAGGCCCAAGCATTGTTGTTAACAGGGTCAGCCAAGTGATCAGCCAAATTCTCCAATGGCCCTTTCCCAGTTACAATCGCTTGTACGAAAAATCCGAACATCGAGAACATAGCCAATCTACCATTCTTAAGCTCCTTCACTTTCAATTCCGCGAATGCCTCTGGATCATCAGCCAGCCCCAATGGATCAAAGCTCCCACCTGGGTAAATCGGGTCAGTGATTTCACCCAACGGACCCCCAGCAATTCTGTACCCTTCCACTGCGCCCATGAGCACTACTTGACAAGCCCAAATCGCTAGAATGCTCTGTGCGTGCACCAAGCTTGGGTTCCCCAAGTAGTCGAGCCCACCTTCGCTGAAGATTTGTGATCCAGCTTTGAACCACACAGCCTCGCCGAATTTGACTCCGTTGCGGGAGAGGAGCTCCGGGAATACGCAGCCTAAGGCTCCGAGCATGGCCCATCTCGAGTGGATTACTTCGAGTTCACGGTTTTTGGCGAAGGTTTCGGGGTCGGCGGAGAGGCCGGCAGTGTCCCAACCGTAGTCACCGGGGAATTCTCCGGTAAGATAGGATGGGGGTTCTCCAGAGAATGGGCCAAGGTATTTGACACGATCGGGGCCGTACCATGGGCTACCGGAGGAAACGGGCTTGGGCTTTCCGGCGGTTTTTCTCATGGTAATGCGGCCTTCGCCGAGGAGGTCGGAGGCGGTGGGGGATAATTTGACGGCTTGGCCGGCGAAGGAAGGGGAGGAGAGAGCCATGGATGAAGCTGCCAT

mRNA sequence

TCACTTTCCAGGTACAAAGTTAGTAGCATAGGCCCAAGCATTGTTGTTAACAGGGTCAGCCAAGTGATCAGCCAAATTCTCCAATGGCCCTTTCCCAGTTACAATCGCTTGTACGAAAAATCCGAACATCGAGAACATAGCCAATCTACCATTCTTAAGCTCCTTCACTTTCAATTCCGCGAATGCCTCTGGATCATCAGCCAGCCCCAATGGATCAAAGCTCCCACCTGGGTAAATCGGGTCAGTGATTTCACCCAACGGACCCCCAGCAATTCTGTACCCTTCCACTGCGCCCATGAGCACTACTTGACAAGCCCAAATCGCTAGAATGCTCTGTGCGTGCACCAAGCTTGGGTTCCCCAAGTAGTCGAGCCCACCTTCGCTGAAGATTTGTGATCCAGCTTTGAACCACACAGCCTCGCCGAATTTGACTCCGTTGCGGGAGAGGAGCTCCGGGAATACGCAGCCTAAGGCTCCGAGCATGGCCCATCTCGAGTGGATTACTTCGAGTTCACGGTTTTTGGCGAAGGAAGGGGAGGAGAGAGCCATGGATGAAGCTGCCAT

Coding sequence (CDS)

TCACTTTCCAGGTACAAAGTTAGTAGCATAGGCCCAAGCATTGTTGTTAACAGGGTCAGCCAAGTGATCAGCCAAATTCTCCAATGGCCCTTTCCCAGTTACAATCGCTTGTACGAAAAATCCGAACATCGAGAACATAGCCAATCTACCATTCTTAAGCTCCTTCACTTTCAATTCCGCGAATGCCTCTGGATCATCAGCCAGCCCCAATGGATCAAAGCTCCCACCTGGGTAAATCGGGTCAGTGATTTCACCCAACGGACCCCCAGCAATTCTGTACCCTTCCACTGCGCCCATGAGCACTACTTGACAAGCCCAAATCGCTAG

Protein sequence

SLSRYKVSSIGPSIVVNRVSQVISQILQWPFPSYNRLYEKSEHREHSQSTILKLLHFQFRECLWIISQPQWIKAPTWVNRVSDFTQRTPSNSVPFHCAHEHYLTSPNR
BLAST of CsGy6G011510 vs. NCBI nr
Match: OAY74252.1 (Pectate lyase [Ananas comosus])

HSP 1 Score: 86.3 bits (212), Expect = 7.1e-14
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 0

Query: 7   VSSIGPSIVVNRVSQVISQILQWPFPSYNRLYEKSEHREHSQSTILKLLHFQFRECLWII 66
           V  +GP +VV+ V +V+ ++L      ++ L+E++EH EH Q  +L LLH QF E L +I
Sbjct: 438 VGGVGPGVVVDGVGEVVGEVLDRALAGHDGLHEEAEHGEHGQPAVLDLLHLQFCEGLRVI 497

Query: 67  SQPQWIKAPTWVNRVSDFTQRTPSNSVPFHCAHEHYLTSPNR 109
            QPQ ++A   V R+   T+R P + VP    HE +L  P+R
Sbjct: 498 GQPQRVEAAAGVERIGHLTERAPGHPVPLDGTHEDHLARPDR 539

BLAST of CsGy6G011510 vs. NCBI nr
Match: RDY06773.1 (Myosin-2, partial [Mucuna pruriens])

HSP 1 Score: 69.3 bits (168), Expect = 9.0e-09
Identity = 41/101 (40.59%), Postives = 64/101 (63.37%), Query Frame = 0

Query: 4    RYKVSSIGPSIVVNRVSQVISQILQWPFPSYNRLYEKSEHREHSQSTILKLLHFQFRECL 63
            R+K+S I PSIV +RV +V+ ++LQW F S N L ++++HREH Q +IL LL F+  +  
Sbjct: 1178 RHKLSGIDPSIVSHRVVKVVQKVLQWTFSSDNGLNKETKHREHGQPSILDLLDFELSKGD 1237

Query: 64   WIISQPQWIKAPT-WVNRVSDFTQRTPSNSVPFHCAHEHYL 104
             +IS+ Q +K  T  V  V+      P ++ PF+ AH++ L
Sbjct: 1238 RVISKAQRVKVLTPRVEVVALSHPIKPVDAEPFNKAHQNNL 1278

BLAST of CsGy6G011510 vs. TrEMBL
Match: tr|A0A2P2LQQ4|A0A2P2LQQ4_RHIMU (Chlorophyll a-b binding protein of LHCII type 1-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.8e-24
Identity = 59/107 (55.14%), Postives = 75/107 (70.09%), Query Frame = 0

Query: 1   SLSRYKVSSIGPSIVVNRVSQVISQILQWPFPSYNRLYEKSEHREHSQSTILKLLHFQFR 60
           SLSRYKV  I PSIVV+ +S+V+SQILQW   S+N L ++SEHREH QS IL LLH Q  
Sbjct: 48  SLSRYKVCGISPSIVVDGISKVVSQILQWSLTSHNGLNKESEHREHGQSAILDLLHLQLS 107

Query: 61  ECLWIISQPQWIKAPTWVNRVSDFTQRTPSNSVPFHCAHEHYLTSPN 108
           + LW+ISQ QW+KA T V  V D ++    N+V  H +H+  LTSP+
Sbjct: 108 KSLWVISQSQWVKAATRVEWVCDLSEGPTRNTVTLHSSHQDNLTSPD 154

BLAST of CsGy6G011510 vs. TrEMBL
Match: tr|A0A2P2LQR3|A0A2P2LQR3_RHIMU (Chlorophyll a-b binding proteinic OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.8e-24
Identity = 59/107 (55.14%), Postives = 75/107 (70.09%), Query Frame = 0

Query: 1   SLSRYKVSSIGPSIVVNRVSQVISQILQWPFPSYNRLYEKSEHREHSQSTILKLLHFQFR 60
           SLSRYKV  I PSIVV+ +S+V+SQILQW   S+N L ++SEHREH QS IL LLH Q  
Sbjct: 48  SLSRYKVCGISPSIVVDGISKVVSQILQWSLTSHNGLNKESEHREHGQSAILDLLHLQLS 107

Query: 61  ECLWIISQPQWIKAPTWVNRVSDFTQRTPSNSVPFHCAHEHYLTSPN 108
           + LW+ISQ QW+KA T V  V D ++    N+V  H +H+  LTSP+
Sbjct: 108 KSLWVISQSQWVKAATRVEWVCDLSEGPTRNTVTLHSSHQDNLTSPD 154

BLAST of CsGy6G011510 vs. TrEMBL
Match: tr|A0A1D5S9F7|A0A1D5S9F7_WHEAT (Uncharacterized protein OS=Triticum aestivum OX=4565 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.0e-16
Identity = 44/107 (41.12%), Postives = 68/107 (63.55%), Query Frame = 0

Query: 1   SLSRYKVSSIGPSIVVNRVSQVISQILQWPFPSYNRLYEKSEHREHSQSTILKLLHFQFR 60
           SL+  KV    P +VV+RV +V+S++L+W     + L+++++HREH ++ IL  LH + R
Sbjct: 29  SLAGDKVCGKRPCVVVDRVGEVVSEVLEWALARDDGLHKEAKHREHGEAAILDFLHLELR 88

Query: 61  ECLWIISQPQWIKAPTWVNRVSDFTQRTPSNSVPFHCAHEHYLTSPN 108
           ECL +I Q QW++A   V  V   T+   SN+VP + AHEH L  P+
Sbjct: 89  ECLGVIGQAQWVEAAAGVEWVDYLTKWAASNAVPLNGAHEHDLACPD 135

BLAST of CsGy6G011510 vs. TrEMBL
Match: tr|A0A0D9V517|A0A0D9V517_9ORYZ (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.2e-15
Identity = 43/107 (40.19%), Postives = 68/107 (63.55%), Query Frame = 0

Query: 1    SLSRYKVSSIGPSIVVNRVSQVISQILQWPFPSYNRLYEKSEHREHSQSTILKLLHFQFR 60
            SL+  +V  +GP +VV+ +SQV+ Q+L+      N L E++EH EH ++T+L LLH +  
Sbjct: 978  SLTGDEVGGVGPGVVVDGISQVVGQVLEGALAGNNGLDEETEHGEHGEATVLNLLHLELG 1037

Query: 61   ECLWIISQPQWIKAPTWVNRVSDFTQRTPSNSVPFHCAHEHYLTSPN 108
            + L +IS+ + ++A   V RV D  +RT  N+VP +  HEH L SP+
Sbjct: 1038 KRLGVISETKRVEAAAGVERVDDLAERTTGNAVPLNGTHEHDLASPD 1084

BLAST of CsGy6G011510 vs. TrEMBL
Match: tr|A0A199VAW8|A0A199VAW8_ANACO (Pectate lyase OS=Ananas comosus OX=4615 GN=ACMD2_17510 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-14
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 0

Query: 7   VSSIGPSIVVNRVSQVISQILQWPFPSYNRLYEKSEHREHSQSTILKLLHFQFRECLWII 66
           V  +GP +VV+ V +V+ ++L      ++ L+E++EH EH Q  +L LLH QF E L +I
Sbjct: 438 VGGVGPGVVVDGVGEVVGEVLDRALAGHDGLHEEAEHGEHGQPAVLDLLHLQFCEGLRVI 497

Query: 67  SQPQWIKAPTWVNRVSDFTQRTPSNSVPFHCAHEHYLTSPNR 109
            QPQ ++A   V R+   T+R P + VP    HE +L  P+R
Sbjct: 498 GQPQRVEAAAGVERIGHLTERAPGHPVPLDGTHEDHLARPDR 539

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
OAY74252.17.1e-1439.22Pectate lyase [Ananas comosus][more]
RDY06773.19.0e-0940.59Myosin-2, partial [Mucuna pruriens][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A2P2LQQ4|A0A2P2LQQ4_RHIMU3.8e-2455.14Chlorophyll a-b binding protein of LHCII type 1-like OS=Rhizophora mucronata OX=... [more]
tr|A0A2P2LQR3|A0A2P2LQR3_RHIMU3.8e-2455.14Chlorophyll a-b binding proteinic OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
tr|A0A1D5S9F7|A0A1D5S9F7_WHEAT5.0e-1641.12Uncharacterized protein OS=Triticum aestivum OX=4565 PE=4 SV=1[more]
tr|A0A0D9V517|A0A0D9V517_9ORYZ4.2e-1540.19Uncharacterized protein OS=Leersia perrieri OX=77586 PE=3 SV=1[more]
tr|A0A199VAW8|A0A199VAW8_ANACO4.7e-1439.22Pectate lyase OS=Ananas comosus OX=4615 GN=ACMD2_17510 PE=3 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G011510.1CsGy6G011510.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy6G011510Cucumber (Gy14) v2cgybcgybB155
CsGy6G011510Cucurbita maxima (Rimu)cgybcmaB711
CsGy6G011510Cucurbita maxima (Rimu)cgybcmaB783
CsGy6G011510Cucurbita maxima (Rimu)cgybcmaB790
CsGy6G011510Cucurbita maxima (Rimu)cgybcmaB800
CsGy6G011510Cucurbita maxima (Rimu)cgybcmaB811
CsGy6G011510Cucurbita maxima (Rimu)cgybcmaB814
CsGy6G011510Cucurbita moschata (Rifu)cgybcmoB695
CsGy6G011510Cucurbita moschata (Rifu)cgybcmoB762
CsGy6G011510Cucurbita moschata (Rifu)cgybcmoB769
CsGy6G011510Cucurbita moschata (Rifu)cgybcmoB778
CsGy6G011510Cucurbita moschata (Rifu)cgybcmoB791
CsGy6G011510Cucurbita moschata (Rifu)cgybcmoB793
CsGy6G011510Cucurbita pepo (Zucchini)cgybcpeB750
CsGy6G011510Cucurbita pepo (Zucchini)cgybcpeB756
CsGy6G011510Cucurbita pepo (Zucchini)cgybcpeB768
CsGy6G011510Cucurbita pepo (Zucchini)cgybcpeB843
CsGy6G011510Cucurbita pepo (Zucchini)cgybcpeB863
CsGy6G011510Cucumber (Chinese Long) v2cgybcuB282
CsGy6G011510Cucumber (Chinese Long) v2cgybcuB290
CsGy6G011510Bottle gourd (USVL1VR-Ls)cgyblsiB372
CsGy6G011510Bottle gourd (USVL1VR-Ls)cgyblsiB377
CsGy6G011510Bottle gourd (USVL1VR-Ls)cgyblsiB390
CsGy6G011510Melon (DHL92) v3.5.1cgybmeB365
CsGy6G011510Melon (DHL92) v3.5.1cgybmeB368
CsGy6G011510Melon (DHL92) v3.5.1cgybmeB400
CsGy6G011510Melon (DHL92) v3.6.1cgybmedB383
CsGy6G011510Melon (DHL92) v3.6.1cgybmedB399
CsGy6G011510Watermelon (Charleston Gray)cgybwcgB387
CsGy6G011510Watermelon (Charleston Gray)cgybwcgB401
CsGy6G011510Watermelon (Charleston Gray)cgybwcgB413
CsGy6G011510Watermelon (97103) v1cgybwmB418
CsGy6G011510Watermelon (97103) v1cgybwmB478
CsGy6G011510Watermelon (97103) v1cgybwmB489
CsGy6G011510Wild cucumber (PI 183967)cgybcpiB288
CsGy6G011510Wild cucumber (PI 183967)cgybcpiB296
CsGy6G011510Silver-seed gourdcarcgybB0031
CsGy6G011510Silver-seed gourdcarcgybB0347
CsGy6G011510Silver-seed gourdcarcgybB0400
CsGy6G011510Silver-seed gourdcarcgybB0537
CsGy6G011510Cucumber (Chinese Long) v3cgybcucB298
CsGy6G011510Cucumber (Chinese Long) v3cgybcucB307
CsGy6G011510Watermelon (97103) v2cgybwmbB419
CsGy6G011510Watermelon (97103) v2cgybwmbB485
CsGy6G011510Wax gourdcgybwgoB537
CsGy6G011510Wax gourdcgybwgoB569