CsGy6G006210 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.ACACTAGAAGGGGTGAAAAATGCAATTATATCAAAGTTGATGTCCTAAAGAAGAAAAGTAAAAGAGAAAAAGGGATTTGGGGGCGAAACTCCGTGATGGGGACAGAGGGCCTGAGAAAAATGGCGGCAAGGCAGAAAGCGGTGGCGACACTGCTTAATCTAATTAGAACCCTTAAAAACGATCGCCGGAAGCCTGGTTTCAGCCAGCCTCTGCCGTCGTTGAGACGTGCCTTTTCACTTTTACGATCAGATCAATCTCATCGACAATGTCCCTGAAGATCAGCTTCGTTTTCAACGGTACTGCCCTAACTTCTCCTTTTTGTCTTTTGCATCGATTTCTTTCCTCAATTTTATATCTTTGACTCTTTTATGCGGGGATTTAAGGTATACTGAGACGGGGTTCACTGTGAATGGAGTGGATTATGAGGGCAGCTTGCTTTGTGTTGGGAATTTGTTGATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCTGATAGGTTTGCTTTGCATTTCTTGTTCCTAACTTACAATACTCGATTTACTTCTTTTGTTCTTTTTGGTGATTGAAATGTTTTTTTTTTTTTTGCAGCTTATCTATCTTCCAGATTGTGCGCCCTATTACAGGTAAAATCTGTTGTTGTGTTCGGAAAATGTGTTGAATTATTGGTCATTGTTGAAGTAGTTTTAATACGAGTGTCTAAAGATACCTAGATTTGACGTTTCTATTGAAATGTGTTTATTACTAAAGGACGTCTGTGATTTTCCTTGGCAATTGGTGCCCAAATGTTATATGGTAAGTTGTATTGTCCTGTCAGATTATTGAGGTGAAGTGCAAGCTGGCCCGCGACTGTGGACGAGTAAGGTTCTTGGACTAGTTTTTCTGTGCTTGAGCATGAGCAAGACTTTAACTTTATCATTCCTTTCCTTCTTTCAATACTGTAACATGTGGGGTAAGATTTTCACGTCTGCCTTAGACGAGGATATCTTGTGAGATAGTGCAGGTTGTGGCCTAATTGTTCCTTTGAAGTATCCCACAATACAACCATGCCTTAGTTTTGCTGTTTAATAATTAGATTTTTGATAATTTGACTCGTGTACCTAGTTAAAAATGTAGACGGATCTGAAGCTTTTAAACAGGAAGATGATGAGGATTTTTTTTTCTTCACTCTTTCTCGTTTTTTTCTTCCTTCTTTCTCTTTCGGCTGATAAGCAAGTCTACCCTCCATATATTTTGATTATGCTAGAAGAGGGAAGAGGACCAAATGAGATATTTACATCAGCTAGCTAATGTTGTAAGGGACGTGTAATATGTTGTAGAGGAGATGGGAGAATGAATCTAGAATTCGCAAATTTGTTATTGAGAAAGGGAGGAATAACATAATTAGAGTGGACTCGTAATATTTATCAATTAAAAGCTTCTTGAATATGTGAAAGATTTGCACTTTTCAGCCATTGAATGAATTACCCAAGACCTAAACTCTTGTTTCTTTATTCTTTCTCTGATTCTGAGATGAGGATGTCAAGTGTACGTTTCTGTTAACAAGGTTTATGGTTTTCTTTCTTAGGCATTCTTCTAGAATCTGACATGAGAGATTACTTCCATTTAAAGTTGAATGCATAAGCTAGCCTGTAAACCAAATATTCTGTTTATTTTCGAGCTCTGCCGTCATCATCTTAGTGTCGTGTATTGTTCATATTTGCTCTTTGCTAGCACATTTTTGTTGATTTCTACTGTCAACTGATTAATTTTCTTAATTTTAATTTTTTTTAATCTTTCTTAATGTCAGAAATTCTAATACTTGGCTGTGGGAGATATACTGAACCAGTAAATCCTGAATTGAGGCAGTTCATTCGTTCCACTGACATGAAGTTGGAAGCTGTAGACACGGTACTTTTGGTTTGA ACACTAGAAGGGGTGAAAAATGCAATTATATCAAAGTTGATGTCCTAAAGAAGAAAAGTAAAAGAGAAAAAGGGATTTGGGGGCGAAACTCCGTGATGGGGACAGAGGGCCTGAGAAAAATGGCGGCAAGGCAGAAAGCGGTGGCGACACTGCTTAATCTAATTAGAACCCTTAAAAACGATCGCCGGAAGCCTGGTTTCAGCCAGCCTCTGCCGTCGTTGAGACGTGCCTTTTCACTTTTACGATCAGATCAATCTCATCGACAATGTCCCTGAAGATCAGCTTCGTTTTCAACGGTATACTGAGACGGGGTTCACTGTGAATGGAGTGGATTATGAGGGCAGCTTGCTTTGTGTTGGGAATTTGTTGATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCTGATAGCTTATCTATCTTCCAGATTGTGCGCCCTATTACAGAAATTCTAATACTTGGCTGTGGGAGATATACTGAACCAGTAAATCCTGAATTGAGGCAGTTCATTCGTTCCACTGACATGAAGTTGGAAGCTGTAGACACGGTACTTTTGGTTTGA ATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCTGATAGCTTATCTATCTTCCAGATTGTGCGCCCTATTACAGAAATTCTAATACTTGGCTGTGGGAGATATACTGAACCAGTAAATCCTGAATTGAGGCAGTTCATTCGTTCCACTGACATGAAGTTGGAAGCTGTAGACACGGTACTTTTGGTTTGA MSWTPKKFSEITSDSLSIFQIVRPITEILILGCGRYTEPVNPELRQFIRSTDMKLEAVDTVLLV
BLAST of CsGy6G006210 vs. NCBI nr
Match: XP_008460070.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucumis melo]) HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22 Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 0
BLAST of CsGy6G006210 vs. NCBI nr
Match: XP_022152792.1 (LOW QUALITY PROTEIN: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Momordica charantia]) HSP 1 Score: 111.3 bits (277), Expect = 1.2e-21 Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 0
BLAST of CsGy6G006210 vs. NCBI nr
Match: XP_023000217.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucurbita maxima]) HSP 1 Score: 109.0 bits (271), Expect = 6.0e-21 Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 0
BLAST of CsGy6G006210 vs. NCBI nr
Match: XP_024044849.1 (uncharacterized protein LOC18049741 isoform X4 [Citrus clementina]) HSP 1 Score: 108.2 bits (269), Expect = 1.0e-20 Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0
BLAST of CsGy6G006210 vs. NCBI nr
Match: XP_023513625.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 108.2 bits (269), Expect = 1.0e-20 Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 0
BLAST of CsGy6G006210 vs. TAIR10
Match: AT3G60150.1 (Protein of unknown function (DUF498/DUF598)) HSP 1 Score: 92.8 bits (229), Expect = 8.1e-20 Identity = 40/60 (66.67%), Postives = 52/60 (86.67%), Query Frame = 0
BLAST of CsGy6G006210 vs. TAIR10
Match: AT2G44525.1 (Protein of unknown function (DUF498/DUF598)) HSP 1 Score: 92.4 bits (228), Expect = 1.1e-19 Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 0
BLAST of CsGy6G006210 vs. Swiss-Prot
Match: sp|Q6DFN1|NDUF3_XENTR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Xenopus tropicalis OX=8364 GN=ndufaf3 PE=2 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 2.7e-04 Identity = 19/60 (31.67%), Postives = 35/60 (58.33%), Query Frame = 0
BLAST of CsGy6G006210 vs. Swiss-Prot
Match: sp|Q9JKL4|NDUF3_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Mus musculus OX=10090 GN=Ndufaf3 PE=1 SV=1) HSP 1 Score: 44.7 bits (104), Expect = 4.6e-04 Identity = 19/60 (31.67%), Postives = 35/60 (58.33%), Query Frame = 0
BLAST of CsGy6G006210 vs. Swiss-Prot
Match: sp|A1L1F1|NDUF3_DANRE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Danio rerio OX=7955 GN=ndufaf3 PE=2 SV=1) HSP 1 Score: 43.9 bits (102), Expect = 7.8e-04 Identity = 19/60 (31.67%), Postives = 36/60 (60.00%), Query Frame = 0
BLAST of CsGy6G006210 vs. TrEMBL
Match: tr|A0A1S3CB84|A0A1S3CB84_CUCME (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like OS=Cucumis melo OX=3656 GN=LOC103498992 PE=4 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 7.3e-23 Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 0
BLAST of CsGy6G006210 vs. TrEMBL
Match: tr|V4VZ28|V4VZ28_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022551mg PE=4 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20 Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 0
BLAST of CsGy6G006210 vs. TrEMBL
Match: tr|A0A067H377|A0A067H377_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g030786mg PE=4 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20 Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 0
BLAST of CsGy6G006210 vs. TrEMBL
Match: tr|A0A2H5PZU3|A0A2H5PZU3_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_183080 PE=4 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20 Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 0
BLAST of CsGy6G006210 vs. TrEMBL
Match: tr|A0A067HC80|A0A067HC80_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g030786mg PE=4 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20 Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |