CsGy6G006210 (gene) Cucumber (Gy14) v2

NameCsGy6G006210
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionNADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like
LocationChr6 : 5441573 .. 5443478 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACACTAGAAGGGGTGAAAAATGCAATTATATCAAAGTTGATGTCCTAAAGAAGAAAAGTAAAAGAGAAAAAGGGATTTGGGGGCGAAACTCCGTGATGGGGACAGAGGGCCTGAGAAAAATGGCGGCAAGGCAGAAAGCGGTGGCGACACTGCTTAATCTAATTAGAACCCTTAAAAACGATCGCCGGAAGCCTGGTTTCAGCCAGCCTCTGCCGTCGTTGAGACGTGCCTTTTCACTTTTACGATCAGATCAATCTCATCGACAATGTCCCTGAAGATCAGCTTCGTTTTCAACGGTACTGCCCTAACTTCTCCTTTTTGTCTTTTGCATCGATTTCTTTCCTCAATTTTATATCTTTGACTCTTTTATGCGGGGATTTAAGGTATACTGAGACGGGGTTCACTGTGAATGGAGTGGATTATGAGGGCAGCTTGCTTTGTGTTGGGAATTTGTTGATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCTGATAGGTTTGCTTTGCATTTCTTGTTCCTAACTTACAATACTCGATTTACTTCTTTTGTTCTTTTTGGTGATTGAAATGTTTTTTTTTTTTTTGCAGCTTATCTATCTTCCAGATTGTGCGCCCTATTACAGGTAAAATCTGTTGTTGTGTTCGGAAAATGTGTTGAATTATTGGTCATTGTTGAAGTAGTTTTAATACGAGTGTCTAAAGATACCTAGATTTGACGTTTCTATTGAAATGTGTTTATTACTAAAGGACGTCTGTGATTTTCCTTGGCAATTGGTGCCCAAATGTTATATGGTAAGTTGTATTGTCCTGTCAGATTATTGAGGTGAAGTGCAAGCTGGCCCGCGACTGTGGACGAGTAAGGTTCTTGGACTAGTTTTTCTGTGCTTGAGCATGAGCAAGACTTTAACTTTATCATTCCTTTCCTTCTTTCAATACTGTAACATGTGGGGTAAGATTTTCACGTCTGCCTTAGACGAGGATATCTTGTGAGATAGTGCAGGTTGTGGCCTAATTGTTCCTTTGAAGTATCCCACAATACAACCATGCCTTAGTTTTGCTGTTTAATAATTAGATTTTTGATAATTTGACTCGTGTACCTAGTTAAAAATGTAGACGGATCTGAAGCTTTTAAACAGGAAGATGATGAGGATTTTTTTTTCTTCACTCTTTCTCGTTTTTTTCTTCCTTCTTTCTCTTTCGGCTGATAAGCAAGTCTACCCTCCATATATTTTGATTATGCTAGAAGAGGGAAGAGGACCAAATGAGATATTTACATCAGCTAGCTAATGTTGTAAGGGACGTGTAATATGTTGTAGAGGAGATGGGAGAATGAATCTAGAATTCGCAAATTTGTTATTGAGAAAGGGAGGAATAACATAATTAGAGTGGACTCGTAATATTTATCAATTAAAAGCTTCTTGAATATGTGAAAGATTTGCACTTTTCAGCCATTGAATGAATTACCCAAGACCTAAACTCTTGTTTCTTTATTCTTTCTCTGATTCTGAGATGAGGATGTCAAGTGTACGTTTCTGTTAACAAGGTTTATGGTTTTCTTTCTTAGGCATTCTTCTAGAATCTGACATGAGAGATTACTTCCATTTAAAGTTGAATGCATAAGCTAGCCTGTAAACCAAATATTCTGTTTATTTTCGAGCTCTGCCGTCATCATCTTAGTGTCGTGTATTGTTCATATTTGCTCTTTGCTAGCACATTTTTGTTGATTTCTACTGTCAACTGATTAATTTTCTTAATTTTAATTTTTTTTAATCTTTCTTAATGTCAGAAATTCTAATACTTGGCTGTGGGAGATATACTGAACCAGTAAATCCTGAATTGAGGCAGTTCATTCGTTCCACTGACATGAAGTTGGAAGCTGTAGACACGGTACTTTTGGTTTGA

mRNA sequence

ACACTAGAAGGGGTGAAAAATGCAATTATATCAAAGTTGATGTCCTAAAGAAGAAAAGTAAAAGAGAAAAAGGGATTTGGGGGCGAAACTCCGTGATGGGGACAGAGGGCCTGAGAAAAATGGCGGCAAGGCAGAAAGCGGTGGCGACACTGCTTAATCTAATTAGAACCCTTAAAAACGATCGCCGGAAGCCTGGTTTCAGCCAGCCTCTGCCGTCGTTGAGACGTGCCTTTTCACTTTTACGATCAGATCAATCTCATCGACAATGTCCCTGAAGATCAGCTTCGTTTTCAACGGTATACTGAGACGGGGTTCACTGTGAATGGAGTGGATTATGAGGGCAGCTTGCTTTGTGTTGGGAATTTGTTGATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCTGATAGCTTATCTATCTTCCAGATTGTGCGCCCTATTACAGAAATTCTAATACTTGGCTGTGGGAGATATACTGAACCAGTAAATCCTGAATTGAGGCAGTTCATTCGTTCCACTGACATGAAGTTGGAAGCTGTAGACACGGTACTTTTGGTTTGA

Coding sequence (CDS)

ATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCTGATAGCTTATCTATCTTCCAGATTGTGCGCCCTATTACAGAAATTCTAATACTTGGCTGTGGGAGATATACTGAACCAGTAAATCCTGAATTGAGGCAGTTCATTCGTTCCACTGACATGAAGTTGGAAGCTGTAGACACGGTACTTTTGGTTTGA

Protein sequence

MSWTPKKFSEITSDSLSIFQIVRPITEILILGCGRYTEPVNPELRQFIRSTDMKLEAVDTVLLV
BLAST of CsGy6G006210 vs. NCBI nr
Match: XP_008460070.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 0

Query: 1   MSWTPKKFSEITSDSLSIFQIVRPITEILILGCGRYTEPVNPELRQFIRSTDMKLEAVDT 60
           MSW+PKKFSEIT DSLSIFQIVRPI EIL+LGCGRYTEPVNPELRQFIRST MKLEAVDT
Sbjct: 84  MSWSPKKFSEITPDSLSIFQIVRPIPEILVLGCGRYTEPVNPELRQFIRSTGMKLEAVDT 143

BLAST of CsGy6G006210 vs. NCBI nr
Match: XP_022152792.1 (LOW QUALITY PROTEIN: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 1.2e-21
Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 0

Query: 1   MSWTPKKFSEITSDSLSIFQIVRPITEILILGCGRYTEPVNPELRQFIRSTDMKLEAVDT 60
           MSW+P+KFSEIT++SLSIFQIVRPI EIL+LGCG+YTEPVNPELRQFIRST MKLEAVDT
Sbjct: 82  MSWSPRKFSEITAESLSIFQIVRPIPEILLLGCGKYTEPVNPELRQFIRSTGMKLEAVDT 141

BLAST of CsGy6G006210 vs. NCBI nr
Match: XP_023000217.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucurbita maxima])

HSP 1 Score: 109.0 bits (271), Expect = 6.0e-21
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 0

Query: 1   MSWTPKKFSEITSDSLSIFQIVRPITEILILGCGRYTEPVNPELRQFIRSTDMKLEAVDT 60
           MSW+PKKFSEIT +SLSIFQI+RPI EIL+LGCGRY EPVNPELRQFIRST MKLEAVD+
Sbjct: 84  MSWSPKKFSEITPESLSIFQIIRPIPEILVLGCGRYIEPVNPELRQFIRSTGMKLEAVDS 143

BLAST of CsGy6G006210 vs. NCBI nr
Match: XP_024044849.1 (uncharacterized protein LOC18049741 isoform X4 [Citrus clementina])

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-20
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0

Query: 1   MSWTPKKFSEITSDSLSIFQIVRPITEILILGCGRYTEPVNPELRQFIRSTDMKLEAVDT 60
           +SWTPKKFSEIT + LSIFQ+VRPI EILILGCGRY EPVNPELRQFIRST MKLEA+D+
Sbjct: 84  LSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143

Query: 61  V 62
           V
Sbjct: 144 V 144

BLAST of CsGy6G006210 vs. NCBI nr
Match: XP_023513625.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-20
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 0

Query: 1   MSWTPKKFSEITSDSLSIFQIVRPITEILILGCGRYTEPVNPELRQFIRSTDMKLEAVDT 60
           MSW+PKKFSEIT +SLSIFQI+RPI EIL+LGCGRY EPVNPELRQFIRST MKLEAVD+
Sbjct: 84  MSWSPKKFSEITPESLSIFQIMRPIPEILVLGCGRYIEPVNPELRQFIRSTGMKLEAVDS 143

BLAST of CsGy6G006210 vs. TAIR10
Match: AT3G60150.1 (Protein of unknown function (DUF498/DUF598))

HSP 1 Score: 92.8 bits (229), Expect = 8.1e-20
Identity = 40/60 (66.67%), Postives = 52/60 (86.67%), Query Frame = 0

Query: 1   MSWTPKKFSEITSDSLSIFQIVRPITEILILGCGRYTEPVNPELRQFIRSTDMKLEAVDT 60
           MSW+P+ FS+IT+DSLSIFQ VRPI E+LI+GCGRY  P+NP++RQF++S  MKLE VD+
Sbjct: 83  MSWSPRYFSDITTDSLSIFQTVRPIPELLIVGCGRYNHPLNPQVRQFVKSIGMKLETVDS 142

BLAST of CsGy6G006210 vs. TAIR10
Match: AT2G44525.1 (Protein of unknown function (DUF498/DUF598))

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-19
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 0

Query: 1   MSWTPKKFSEITSDSLSIFQIVRPITEILILGCGRYTEPVNPELRQFIRSTDMKLEAVDT 60
           MSW+P+KFSEIT+DSLSIFQ VRPI E+LI+GCGR   PV PE+RQF++S  MKLE VD+
Sbjct: 83  MSWSPRKFSEITTDSLSIFQTVRPIPELLIVGCGRDIHPVTPEVRQFVKSLGMKLETVDS 142

BLAST of CsGy6G006210 vs. Swiss-Prot
Match: sp|Q6DFN1|NDUF3_XENTR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Xenopus tropicalis OX=8364 GN=ndufaf3 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.7e-04
Identity = 19/60 (31.67%), Postives = 35/60 (58.33%), Query Frame = 0

Query: 1   MSWTPKKFSEITSDSLSIFQIVRPITEILILGCGRYTEPVNPELRQFIRSTDMKLEAVDT 60
           + W    + +I  +SLS+F ++ P  EIL++G G   E ++P + +F+R   + +E  DT
Sbjct: 92  LQWNVGSYKDINLESLSLFHMLSPRIEILVVGTGDRVERLDPNILKFMRQKGVAVEVQDT 151

BLAST of CsGy6G006210 vs. Swiss-Prot
Match: sp|Q9JKL4|NDUF3_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Mus musculus OX=10090 GN=Ndufaf3 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 4.6e-04
Identity = 19/60 (31.67%), Postives = 35/60 (58.33%), Query Frame = 0

Query: 1   MSWTPKKFSEITSDSLSIFQIVRPITEILILGCGRYTEPVNPELRQFIRSTDMKLEAVDT 60
           + W      +IT +S S+F ++ P  EI+++G G  TE ++P++ Q +R   + +E  DT
Sbjct: 88  VQWNVGSHQDITEESFSLFWMLEPRIEIVVVGTGNKTERLHPQVLQAMRQRGIAVEVQDT 147

BLAST of CsGy6G006210 vs. Swiss-Prot
Match: sp|A1L1F1|NDUF3_DANRE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Danio rerio OX=7955 GN=ndufaf3 PE=2 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 7.8e-04
Identity = 19/60 (31.67%), Postives = 36/60 (60.00%), Query Frame = 0

Query: 1   MSWTPKKFSEITSDSLSIFQIVRPITEILILGCGRYTEPVNPELRQFIRSTDMKLEAVDT 60
           + W     S+I+ +SLS+F ++ P  E+L+LG G  TE ++ E+ + ++   + +E  DT
Sbjct: 86  LQWNVGSHSDISVESLSLFYLLEPQIEVLVLGTGARTERLHAEVLEELKKRGIAVEVQDT 145

BLAST of CsGy6G006210 vs. TrEMBL
Match: tr|A0A1S3CB84|A0A1S3CB84_CUCME (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like OS=Cucumis melo OX=3656 GN=LOC103498992 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 7.3e-23
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 0

Query: 1   MSWTPKKFSEITSDSLSIFQIVRPITEILILGCGRYTEPVNPELRQFIRSTDMKLEAVDT 60
           MSW+PKKFSEIT DSLSIFQIVRPI EIL+LGCGRYTEPVNPELRQFIRST MKLEAVDT
Sbjct: 84  MSWSPKKFSEITPDSLSIFQIVRPIPEILVLGCGRYTEPVNPELRQFIRSTGMKLEAVDT 143

BLAST of CsGy6G006210 vs. TrEMBL
Match: tr|V4VZ28|V4VZ28_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022551mg PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 1   MSWTPKKFSEITSDSLSIFQIVRPITEILILGCGRYTEPVNPELRQFIRSTDMKLEAVDT 60
           +SWTPKKFSEIT + LSIFQ+VRPI EILILGCGRY EPVNPELRQFIRST MKLEA+D+
Sbjct: 84  LSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143

BLAST of CsGy6G006210 vs. TrEMBL
Match: tr|A0A067H377|A0A067H377_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g030786mg PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 1   MSWTPKKFSEITSDSLSIFQIVRPITEILILGCGRYTEPVNPELRQFIRSTDMKLEAVDT 60
           +SWTPKKFSEIT + LSIFQ+VRPI EILILGCGRY EPVNPELRQFIRST MKLEA+D+
Sbjct: 84  LSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143

BLAST of CsGy6G006210 vs. TrEMBL
Match: tr|A0A2H5PZU3|A0A2H5PZU3_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_183080 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 1   MSWTPKKFSEITSDSLSIFQIVRPITEILILGCGRYTEPVNPELRQFIRSTDMKLEAVDT 60
           +SWTPKKFSEIT + LSIFQ+VRPI EILILGCGRY EPVNPELRQFIRST MKLEA+D+
Sbjct: 84  LSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143

BLAST of CsGy6G006210 vs. TrEMBL
Match: tr|A0A067HC80|A0A067HC80_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g030786mg PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 1   MSWTPKKFSEITSDSLSIFQIVRPITEILILGCGRYTEPVNPELRQFIRSTDMKLEAVDT 60
           +SWTPKKFSEIT + LSIFQ+VRPI EILILGCGRY EPVNPELRQFIRST MKLEA+D+
Sbjct: 60  LSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008460070.11.1e-2291.67PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-... [more]
XP_022152792.11.2e-2186.67LOW QUALITY PROTEIN: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly... [more]
XP_023000217.16.0e-2185.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucur... [more]
XP_024044849.11.0e-2083.61uncharacterized protein LOC18049741 isoform X4 [Citrus clementina][more]
XP_023513625.11.0e-2085.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucur... [more]
Match NameE-valueIdentityDescription
AT3G60150.18.1e-2066.67Protein of unknown function (DUF498/DUF598)[more]
AT2G44525.11.1e-1970.00Protein of unknown function (DUF498/DUF598)[more]
Match NameE-valueIdentityDescription
sp|Q6DFN1|NDUF3_XENTR2.7e-0431.67NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Xenopus ... [more]
sp|Q9JKL4|NDUF3_MOUSE4.6e-0431.67NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Mus musc... [more]
sp|A1L1F1|NDUF3_DANRE7.8e-0431.67NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Danio re... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3CB84|A0A1S3CB84_CUCME7.3e-2391.67NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like OS=Cuc... [more]
tr|V4VZ28|V4VZ28_9ROSI2.0e-2083.33Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022551mg PE=4 ... [more]
tr|A0A067H377|A0A067H377_CITSI2.0e-2083.33Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g030786mg PE=4 SV=1[more]
tr|A0A2H5PZU3|A0A2H5PZU3_CITUN2.0e-2083.33Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_183080 PE=4 SV=1[more]
tr|A0A067HC80|A0A067HC80_CITSI2.0e-2083.33Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g030786mg PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007523NDUFAF3/AAMDC
IPR036748MTH938-like_sf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032981 mitochondrial respiratory chain complex I assembly
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G006210.1CsGy6G006210.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036748MTH938-like superfamilyGENE3DG3DSA:3.40.1230.10coord: 1..61
e-value: 3.4E-11
score: 45.0
IPR036748MTH938-like superfamilySUPERFAMILYSSF64076MTH938-likecoord: 2..60
IPR007523NDUFAF3/Mth938 domain-containing proteinPFAMPF04430DUF498coord: 2..60
e-value: 1.0E-10
score: 41.5
IPR007523NDUFAF3/Mth938 domain-containing proteinPANTHERPTHR21192NUCLEAR PROTEIN E3-3coord: 1..60
NoneNo IPR availablePANTHERPTHR21192:SF2NADH DEHYDROGENASE UBIQUINONE 1 ALPHA SUBCOMPLEX ASSEMBLY FACTOR 3coord: 1..60

The following gene(s) are paralogous to this gene:

None