CsGy6G005810 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACTTCCCCTCCTCTTTAAGACTCAAACCAAAATCACACACTAAAACACACAAAACTTTCACACAATTCATCCAAATTTTCATCAAACTTTCAAATGTAAAGGGAAAAACCCCATTTGCCCTTTCATATGACCCACACCCAAACATCAATTGCCCTCCATCAACATACCCTCATGAGTACCGGCGAAGGCGGCGTCGCTCACGGCGGAGGGCCATGCGGCGCCTGCAAGTTTTTGAGGAGAAAGTGTGTGAAAGGCTGCATTTTCGCACCCTATTTCGACTCTGATCAAGGCGCCGCCCACTTCGCCGCTGTTCATAAGGTGTTTGGAGCTAGCAATGCCTCTAAGCTCCTCCACCGCATCCCACCTCCCAAACGTCTCGACGCTTGCGTTACGCTTTGTTATGAAGCTCTCGCTAGGGTTCGAGACCCTGTCTATGGTTGCGTTTCTCAAATTTTCTCCCTCCAACAACAGGTTAGTTCGCTAATTATAGTTGATACCTAAGTTTTTTAATTATCAATCAAGTAGTTAAACTCATGGTAGCTAATTATGAATTTAAGCTCTTGAATTCGAAAAACATTTAACTTAACATATCGAAACAAGAAGTGCAAGCTAAAATAACAGAGACGAAAAACATGGAAAAAGATCAAACCAAAGCTAAAGTACTAATTACTGATTTTGAAGCTTTGATTTAAAGGTGAGTTTGTTTTAACATCCATTTTTAGGGTTTTGAGTGTTTGAATGCGAAAAGAGGAAAGTAAACAATTTGTAAAGAGATTTTATGATTGTGGGTTGCAGTTGTAATTATTATAATTAATCAAATGGGATTTTGCTTGAAAACCATGGCGACTTGCATTTCTAGGAAACAAATTATTAGGGTTTTCTTTTTGGAAGGAATTAATTAATGAAAGAGCTTCCCATTTTCCAATGAATTATTTGTCAAACTATTTGAAATAGTTGTTTTGAAAGAGAGAGAGATAGAGAGCGGTGGCGGCTGCCTAATACTTGGTGTGTTGCTTCACAAACTAGCCAAACAATTTTAGCTGCTCCATAAATTTTTATATATATATATATATCTAAGTTTCTACATTTGACTTTCTCTTATTTATTCTTTTCATTATAATCATTTTATCTTAAATAAAAAATAAACCAACCTTAATTATGTTTGTATATTTCCAAGAAACAAAAAGAAGGATAAGGTTTAAGTTGAATTTGTATTCATCTTTAAAAGACAGAGAGAGAGAGAAAGAAAGTGAGCTTTAAGTTGAATTAGATATAAAATTAAGTTTTAAACCTATTAACATTTGTTTAACTTCTAAAGTTTTTCGAATTTGTTCTTTACTTCTTAGGTGTAAAATTGAAAGTGTAAGATTTTGTCAAACATATCTATTTTTCTTTTTCTTTTTGTAGTTTAAGAAACAATTAGAATCAAATCTCAAAGTTAAGAAATTTGTAGAACAGTTTTTTTTAAAGCTTGGAAACCCAGATGGACTTAATTATCAAAGTTTAAGAGCTAGATATATATATATTTTTTAAATTTAGATTTTAGACTTTTGTTGGATATTTGTATAAATAAATTGAAAAAGGTGTCTAAGCAAAGGCAATTTTACGTAATTATTATTATTGTAATAGTCTATAGATTGATCTTTTTTCTCTCTTTCTTTTCTATGGATTGAACTTGAAGTTTTCATTTCACATGGTCTTATTTTATTGTTGCAAATGGAATAGTTAATGCATTGAATTACTTCCTTTAATAAAATTCATATGAGTTTCATTTTAATCTTTTGCTTGCTTGTTTTGCTTTATGTTTTCCAAGAATATCAAATTTTCTTGTCGTTTTATGGCTTCTTATTTTCTAGTTTTGTCCACGAAGCAATCTCCCTTACATAGTACAATTTCACAATTTTGATATATATTATTGGCTATCTTGGATAACAAATACATACATTTTGTATATATCTACATGCAAATACGACACATACTTATATCTTAAATACGATGCGTGTTAGTTTGCATTTTAAGATAAGTTAAAAAAGAATCTTCCGTTAAAGTTTCAAATTCATAAGACTTTTTCGTTTCGTTCTTATCCGTTTCATTTTTCATGGAACTTTATTTATTAGTTATTAATGTTATATTTGGATTACAACATTTTATTAATATCATGACTTGGAGGGTATTTCTATATTTGATCATAGTCTAGTCCAATATACATTTATGATGTCCATAGAATTTTATTCAACTTAGAGTTTTATAAAAAATAAGAACAAGGTTTATCAAGATGTTTTTCCCTTGGTACTCATAATATATAACTTTTTTATATAAAAAATTGTCAAAATTTTACACCTCATAGTGTTATAGATATTTGCAAAAAAAGTGAAGTGTAAATAGTTTAAACCCATAAATCTATATAGAAAATCATTACTCAATCTAAAGCAGTTTTAAGTTCCTTATCAAAGAAGAAAATAAGAGAAAAAAGAGAAACTTTTTCACTCTTTGATTCAAACAGATTCTCACTATATCATTGATTTGTGAGTTAATAGATACTAATTAGCCAAAAATACAATAATTTATAACGACTACACTATGCATGATGATGACCTAACCCTAATTCAAATAAATGTTTATTACAGGTAGTGAATTTGCAGGCAGAGCTAGCATACATTCAGGCTAAACTTTCCACCTTGCAGCGGTTATTTCCACCGCCACTACACACCCCGTCACCCACCACTTGCAACACTCCGCTACCAGAAGCGATCCCGGACTCGGACATGGGTTTGTTTCCCAATGTTCCAATGCTGCTTGACCCCTTACAAACCCAGCTAGGTTGTAATGAAATGACAAATAGCTTTCTGAACCCAGTTGATTATCAAGATCAGATGGATGAAGATGGTGGTCTTCAATCTTTGGCTCGAGAATTCGTCTCGAGGTGCTTGCCTGGAGTACGAATCCGGCCCCCATGCTCACAGATTTAAATCTCTCTAAACTCTTTTGTGACACCGACTTTCATCCAAGGCTCTTAATTTTCTTTCTTTATTTTGGGTTATTAATTAGTCTTTGGAGATAGAACTGTATGGTCAATATATATTTGGTTCTGAAATTTTGGTGAAGATTATTACATATATATATATTGATCTTTCTTTTGTTCTTAAACACAAGCTGGGAACTGTTGTTACTTCTGGAAAAATGTGTGAGA AACTTCCCCTCCTCTTTAAGACTCAAACCAAAATCACACACTAAAACACACAAAACTTTCACACAATTCATCCAAATTTTCATCAAACTTTCAAATGTAAAGGGAAAAACCCCATTTGCCCTTTCATATGACCCACACCCAAACATCAATTGCCCTCCATCAACATACCCTCATGAGTACCGGCGAAGGCGGCGTCGCTCACGGCGGAGGGCCATGCGGCGCCTGCAAGTTTTTGAGGAGAAAGTGTGTGAAAGGCTGCATTTTCGCACCCTATTTCGACTCTGATCAAGGCGCCGCCCACTTCGCCGCTGTTCATAAGGTGTTTGGAGCTAGCAATGCCTCTAAGCTCCTCCACCGCATCCCACCTCCCAAACGTCTCGACGCTTGCGTTACGCTTTGTTATGAAGCTCTCGCTAGGGTTCGAGACCCTGTCTATGGTTGCGTTTCTCAAATTTTCTCCCTCCAACAACAGGTAGTGAATTTGCAGGCAGAGCTAGCATACATTCAGGCTAAACTTTCCACCTTGCAGCGGTTATTTCCACCGCCACTACACACCCCGTCACCCACCACTTGCAACACTCCGCTACCAGAAGCGATCCCGGACTCGGACATGGGTTTGTTTCCCAATGTTCCAATGCTGCTTGACCCCTTACAAACCCAGCTAGGTTGTAATGAAATGACAAATAGCTTTCTGAACCCAGTTGATTATCAAGATCAGATGGATGAAGATGGTGGTCTTCAATCTTTGGCTCGAGAATTCGTCTCGAGGTGCTTGCCTGGAGTACGAATCCGGCCCCCATGCTCACAGATTTAAATCTCTCTAAACTCTTTTGTGACACCGACTTTCATCCAAGGCTCTTAATTTTCTTTCTTTATTTTGGGTTATTAATTAGTCTTTGGAGATAGAACTGTATGGTCAATATATATTTGGTTCTGAAATTTTGGTGAAGATTATTACATATATATATATTGATCTTTCTTTTGTTCTTAAACACAAGCTGGGAACTGTTGTTACTTCTGGAAAAATGTGTGAGA ATGACCCACACCCAAACATCAATTGCCCTCCATCAACATACCCTCATGAGTACCGGCGAAGGCGGCGTCGCTCACGGCGGAGGGCCATGCGGCGCCTGCAAGTTTTTGAGGAGAAAGTGTGTGAAAGGCTGCATTTTCGCACCCTATTTCGACTCTGATCAAGGCGCCGCCCACTTCGCCGCTGTTCATAAGGTGTTTGGAGCTAGCAATGCCTCTAAGCTCCTCCACCGCATCCCACCTCCCAAACGTCTCGACGCTTGCGTTACGCTTTGTTATGAAGCTCTCGCTAGGGTTCGAGACCCTGTCTATGGTTGCGTTTCTCAAATTTTCTCCCTCCAACAACAGGTAGTGAATTTGCAGGCAGAGCTAGCATACATTCAGGCTAAACTTTCCACCTTGCAGCGGTTATTTCCACCGCCACTACACACCCCGTCACCCACCACTTGCAACACTCCGCTACCAGAAGCGATCCCGGACTCGGACATGGGTTTGTTTCCCAATGTTCCAATGCTGCTTGACCCCTTACAAACCCAGCTAGGTTGTAATGAAATGACAAATAGCTTTCTGAACCCAGTTGATTATCAAGATCAGATGGATGAAGATGGTGGTCTTCAATCTTTGGCTCGAGAATTCGTCTCGAGGTGCTTGCCTGGAGTACGAATCCGGCCCCCATGCTCACAGATTTAA MTHTQTSIALHQHTLMSTGEGGVAHGGGPCGACKFLRRKCVKGCIFAPYFDSDQGAAHFAAVHKVFGASNASKLLHRIPPPKRLDACVTLCYEALARVRDPVYGCVSQIFSLQQQVVNLQAELAYIQAKLSTLQRLFPPPLHTPSPTTCNTPLPEAIPDSDMGLFPNVPMLLDPLQTQLGCNEMTNSFLNPVDYQDQMDEDGGLQSLAREFVSRCLPGVRIRPPCSQI
BLAST of CsGy6G005810 vs. NCBI nr
Match: XP_004145059.2 (PREDICTED: LOB domain-containing protein 19 [Cucumis sativus]) HSP 1 Score: 421.0 bits (1081), Expect = 2.6e-114 Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0
BLAST of CsGy6G005810 vs. NCBI nr
Match: KGN46237.1 (hypothetical protein Csa_6G076850 [Cucumis sativus]) HSP 1 Score: 391.0 bits (1003), Expect = 2.8e-105 Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0
BLAST of CsGy6G005810 vs. NCBI nr
Match: XP_008460130.1 (PREDICTED: LOB domain-containing protein 19 [Cucumis melo]) HSP 1 Score: 379.8 bits (974), Expect = 6.5e-102 Identity = 210/228 (92.11%), Postives = 214/228 (93.86%), Query Frame = 0
BLAST of CsGy6G005810 vs. NCBI nr
Match: XP_023006103.1 (LOB domain-containing protein 19-like [Cucurbita maxima]) HSP 1 Score: 307.4 bits (786), Expect = 4.1e-80 Identity = 170/204 (83.33%), Postives = 179/204 (87.75%), Query Frame = 0
BLAST of CsGy6G005810 vs. NCBI nr
Match: XP_023548961.1 (LOB domain-containing protein 19-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 300.4 bits (768), Expect = 5.0e-78 Identity = 169/204 (82.84%), Postives = 178/204 (87.25%), Query Frame = 0
BLAST of CsGy6G005810 vs. TAIR10
Match: AT2G45410.1 (LOB domain-containing protein 19) HSP 1 Score: 152.5 bits (384), Expect = 3.1e-37 Identity = 96/217 (44.24%), Postives = 115/217 (53.00%), Query Frame = 0
BLAST of CsGy6G005810 vs. TAIR10
Match: AT4G00220.1 (Lateral organ boundaries (LOB) domain family protein) HSP 1 Score: 146.4 bits (368), Expect = 2.2e-35 Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = 0
BLAST of CsGy6G005810 vs. TAIR10
Match: AT4G00210.1 (LOB domain-containing protein 31) HSP 1 Score: 140.6 bits (353), Expect = 1.2e-33 Identity = 66/89 (74.16%), Postives = 71/89 (79.78%), Query Frame = 0
BLAST of CsGy6G005810 vs. TAIR10
Match: AT2G45420.1 (LOB domain-containing protein 18) HSP 1 Score: 137.9 bits (346), Expect = 7.9e-33 Identity = 62/80 (77.50%), Postives = 70/80 (87.50%), Query Frame = 0
BLAST of CsGy6G005810 vs. TAIR10
Match: AT3G03760.1 (LOB domain-containing protein 20) HSP 1 Score: 136.3 bits (342), Expect = 2.3e-32 Identity = 67/93 (72.04%), Postives = 73/93 (78.49%), Query Frame = 0
BLAST of CsGy6G005810 vs. Swiss-Prot
Match: sp|O22132|LBD19_ARATH (LOB domain-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=LBD19 PE=2 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 5.6e-36 Identity = 96/217 (44.24%), Postives = 115/217 (53.00%), Query Frame = 0
BLAST of CsGy6G005810 vs. Swiss-Prot
Match: sp|O81323|LBD30_ARATH (LOB domain-containing protein 30 OS=Arabidopsis thaliana OX=3702 GN=LBD30 PE=1 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 4.0e-34 Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = 0
BLAST of CsGy6G005810 vs. Swiss-Prot
Match: sp|O81322|LBD31_ARATH (LOB domain-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=LBD31 PE=2 SV=2) HSP 1 Score: 140.6 bits (353), Expect = 2.2e-32 Identity = 66/89 (74.16%), Postives = 71/89 (79.78%), Query Frame = 0
BLAST of CsGy6G005810 vs. Swiss-Prot
Match: sp|O22131|LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2) HSP 1 Score: 137.9 bits (346), Expect = 1.4e-31 Identity = 62/80 (77.50%), Postives = 70/80 (87.50%), Query Frame = 0
BLAST of CsGy6G005810 vs. Swiss-Prot
Match: sp|Q9SRV3|LBD20_ARATH (LOB domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=LBD20 PE=2 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 4.1e-31 Identity = 67/93 (72.04%), Postives = 73/93 (78.49%), Query Frame = 0
BLAST of CsGy6G005810 vs. TrEMBL
Match: tr|A0A0A0KCW1|A0A0A0KCW1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G076850 PE=4 SV=1) HSP 1 Score: 391.0 bits (1003), Expect = 1.9e-105 Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0
BLAST of CsGy6G005810 vs. TrEMBL
Match: tr|A0A1S3CBD6|A0A1S3CBD6_CUCME (LOB domain-containing protein 19 OS=Cucumis melo OX=3656 GN=LOC103499031 PE=4 SV=1) HSP 1 Score: 379.8 bits (974), Expect = 4.3e-102 Identity = 210/228 (92.11%), Postives = 214/228 (93.86%), Query Frame = 0
BLAST of CsGy6G005810 vs. TrEMBL
Match: tr|A0A1R3I7V5|A0A1R3I7V5_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14278 PE=4 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 2.5e-49 Identity = 119/209 (56.94%), Postives = 136/209 (65.07%), Query Frame = 0
BLAST of CsGy6G005810 vs. TrEMBL
Match: tr|A0A1R3K0K6|A0A1R3K0K6_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_12555 PE=4 SV=1) HSP 1 Score: 203.0 bits (515), Expect = 7.3e-49 Identity = 118/209 (56.46%), Postives = 135/209 (64.59%), Query Frame = 0
BLAST of CsGy6G005810 vs. TrEMBL
Match: tr|V4TDR1|V4TDR1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022291mg PE=4 SV=1) HSP 1 Score: 199.5 bits (506), Expect = 8.0e-48 Identity = 108/204 (52.94%), Postives = 129/204 (63.24%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |