CsGy6G002830 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G002830
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr6 : 2180128 .. 2180669 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACACCATGAGCGTCGTAGCCAATGTTTGTAAACGAGTTCTCGTCACAGTTCTTTGTGGTATTTTTGTTTTGTTGGTTTCTCATACTATTGCTGTGTTTGCATTGTTCTTGATTGTCTTGCCATTTGGGAAAGTTGATGGAACATCAATGGGTGTGGCTTTCGTTTTTTACTTTGTTGGGTTGTTGTGTTTGGTAGTGGTGTTACAATTGGCTGGTGTTGTTTCTATTTTGGAAGAGTTTTGTGGGTTTAAAGCCATGGGCGAAGAGTAGTTTGCTCTTGAAGGAAAGGATGGTATCGGCGACAGTAATGCGTTGGCAATTTATTCGGGTTTGGGGATTTTTCTATGGTTAGAGGGTTTTGTTACAAAGATAATGCTTTTTTCGTCGGCAATGTGGATGAATGTATCGAGCAGTTTGTCATTACTACTGTTGATTTTGGTTTACCTATTATGGAGGCTCGTGTTGGAGACGATGTTCTATTTCGTCTACAAATCGTATCATCATCTGAGAGTATCTACACATCAGACTATCTCATATAA

mRNA sequence

ATGGACACCATGAGCGTCGTAGCCAATGTTTGTAAACGAGTTCTCGTCACAGTTCTTTGTGGTATTTTTGTTTTGTTGGTTTCTCATACTATTGCTGTGTTTGCATTGTTCTTGATTGTCTTGCCATTTGGGAAAGTTGATGGAACATCAATGGGTGTGGCTTTCGTTTTTTACTTTGTTGGGTTGTTGTGTTTGGTAGTGGTGTTACAATTGGCTGGTGTTGTTTCTATTTTGGAAGAGTTTTGTGGGTTTAAAGCCATGGGCGAAGAAGGGTTTTGTTACAAAGATAATGCTTTTTTCGTCGGCAATGTGGATGAATGTATCGAGCAGTTTGTCATTACTACTGTTGATTTTGGTTTACCTATTATGGAGGCTCGTGTTGGAGACGATGTTCTATTTCGTCTACAAATCGTATCATCATCTGAGAGTATCTACACATCAGACTATCTCATATAA

Coding sequence (CDS)

ATGGACACCATGAGCGTCGTAGCCAATGTTTGTAAACGAGTTCTCGTCACAGTTCTTTGTGGTATTTTTGTTTTGTTGGTTTCTCATACTATTGCTGTGTTTGCATTGTTCTTGATTGTCTTGCCATTTGGGAAAGTTGATGGAACATCAATGGGTGTGGCTTTCGTTTTTTACTTTGTTGGGTTGTTGTGTTTGGTAGTGGTGTTACAATTGGCTGGTGTTGTTTCTATTTTGGAAGAGTTTTGTGGGTTTAAAGCCATGGGCGAAGAAGGGTTTTGTTACAAAGATAATGCTTTTTTCGTCGGCAATGTGGATGAATGTATCGAGCAGTTTGTCATTACTACTGTTGATTTTGGTTTACCTATTATGGAGGCTCGTGTTGGAGACGATGTTCTATTTCGTCTACAAATCGTATCATCATCTGAGAGTATCTACACATCAGACTATCTCATATAA

Protein sequence

MDTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFVGLLCLVVVLQLAGVVSILEEFCGFKAMGEEGFCYKDNAFFVGNVDECIEQFVITTVDFGLPIMEARVGDDVLFRLQIVSSSESIYTSDYLI

Homology

[Close]

BLAST of CsGy6G002830 vs. NCBI nr
Match: KGN45905.1 (hypothetical protein Csa_6G020190 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 2.9e-37
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MDTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFV 60
          MDTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFV
Sbjct: 1  MDTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFV 60

Query: 61 GLLCLVVVLQLAGVVSILEEFCGFKAMGEE 91
          GLLCLVVVLQLAGVVSILEEFCGFKAMGEE
Sbjct: 61 GLLCLVVVLQLAGVVSILEEFCGFKAMGEE 90

[Close]

BLAST of CsGy6G002830 vs. NCBI nr
Match: KGN45906.1 (hypothetical protein Csa_6G020200 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 1.5e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 91  GFCYKDNAFFVGNVDECIEQFVITTVDFGLPIMEARVGDDVLFRLQIVSSSESIYTSDYL 150
           GFCYKDNAFFVGNVDECIEQFVITTVDFGLPIMEARVGDDVLFRLQIVSSSESIYTSDYL
Sbjct: 4   GFCYKDNAFFVGNVDECIEQFVITTVDFGLPIMEARVGDDVLFRLQIVSSSESIYTSDYL 63

Query: 151 I 152
           I
Sbjct: 64  I 64

[Close]

BLAST of CsGy6G002830 vs. NCBI nr
Match: KGN45909.1 (hypothetical protein Csa_6G020230 [Cucumis sativus] >KGN45910.1 hypothetical protein Csa_6G020730 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 9.3e-20
Identity = 63/96 (65.62%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 2   DTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFVG 61
           DTMSVV  V KR+LVT LC I V L+ H I   ALF+I+LP G VD T++GVAFVFYFVG
Sbjct: 43  DTMSVVVKVWKRLLVTNLCVILVFLIYHMIVGLALFIIILPLGTVDRTTLGVAFVFYFVG 102

Query: 62  LLCLVVVLQLAGVVSILEEFCGFKAMGEEGFCYKDN 98
           LL LVVVLQLAGVVS+LEE  GFKAM +     K+N
Sbjct: 103 LLYLVVVLQLAGVVSVLEESRGFKAMAKSRLLLKEN 138

[Close]

BLAST of CsGy6G002830 vs. NCBI nr
Match: XP_008464353.1 (PREDICTED: uncharacterized protein LOC103502262 [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-19
Identity = 61/96 (63.54%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 2   DTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFVG 61
           D MSVV  V KR+LVT LC I V  + H I   ALF+I+LP GKVD T++GVAFVFYFVG
Sbjct: 117 DIMSVVVKVWKRLLVTFLCVILVFFIYHMIVGLALFIIILPLGKVDRTTLGVAFVFYFVG 176

Query: 62  LLCLVVVLQLAGVVSILEEFCGFKAMGEEGFCYKDN 98
           LL LVVVLQL+GVVS+LEE  GFKAM +     K+N
Sbjct: 177 LLYLVVVLQLSGVVSVLEESSGFKAMAKSRLLLKEN 212

[Close]

BLAST of CsGy6G002830 vs. NCBI nr
Match: KGN47986.1 (hypothetical protein Csa_6G421800 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 6.0e-19
Identity = 60/96 (62.50%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 2   DTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFVG 61
           DTMSVV  V KR+LVT LC I V L+ H I   ALF+I+LP G+VD T++GVAF+FYF+G
Sbjct: 117 DTMSVVVTVWKRLLVTFLCVILVFLIYHMIVGLALFIIILPLGEVDRTTLGVAFLFYFIG 176

Query: 62  LLCLVVVLQLAGVVSILEEFCGFKAMGEEGFCYKDN 98
           L  LVVVLQLAGVVS+LEE  GFKAM       K+N
Sbjct: 177 LFYLVVVLQLAGVVSVLEESRGFKAMENSRLLLKEN 212

[Close]

BLAST of CsGy6G002830 vs. TrEMBL
Match: tr|A0A0A0K815|A0A0A0K815_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020190 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.9e-37
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MDTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFV 60
          MDTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFV
Sbjct: 1  MDTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFV 60

Query: 61 GLLCLVVVLQLAGVVSILEEFCGFKAMGEE 91
          GLLCLVVVLQLAGVVSILEEFCGFKAMGEE
Sbjct: 61 GLLCLVVVLQLAGVVSILEEFCGFKAMGEE 90

[Close]

BLAST of CsGy6G002830 vs. TrEMBL
Match: tr|A0A0A0KDQ0|A0A0A0KDQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020200 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 9.7e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 91  GFCYKDNAFFVGNVDECIEQFVITTVDFGLPIMEARVGDDVLFRLQIVSSSESIYTSDYL 150
           GFCYKDNAFFVGNVDECIEQFVITTVDFGLPIMEARVGDDVLFRLQIVSSSESIYTSDYL
Sbjct: 4   GFCYKDNAFFVGNVDECIEQFVITTVDFGLPIMEARVGDDVLFRLQIVSSSESIYTSDYL 63

Query: 151 I 152
           I
Sbjct: 64  I 64

[Close]

BLAST of CsGy6G002830 vs. TrEMBL
Match: tr|A0A0A0K819|A0A0A0K819_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020230 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.1e-20
Identity = 63/96 (65.62%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 2   DTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFVG 61
           DTMSVV  V KR+LVT LC I V L+ H I   ALF+I+LP G VD T++GVAFVFYFVG
Sbjct: 43  DTMSVVVKVWKRLLVTNLCVILVFLIYHMIVGLALFIIILPLGTVDRTTLGVAFVFYFVG 102

Query: 62  LLCLVVVLQLAGVVSILEEFCGFKAMGEEGFCYKDN 98
           LL LVVVLQLAGVVS+LEE  GFKAM +     K+N
Sbjct: 103 LLYLVVVLQLAGVVSVLEESRGFKAMAKSRLLLKEN 138

[Close]

BLAST of CsGy6G002830 vs. TrEMBL
Match: tr|A0A1S3CMT6|A0A1S3CMT6_CUCME (uncharacterized protein LOC103502262 OS=Cucumis melo OX=3656 GN=LOC103502262 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-19
Identity = 61/96 (63.54%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 2   DTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFVG 61
           D MSVV  V KR+LVT LC I V  + H I   ALF+I+LP GKVD T++GVAFVFYFVG
Sbjct: 117 DIMSVVVKVWKRLLVTFLCVILVFFIYHMIVGLALFIIILPLGKVDRTTLGVAFVFYFVG 176

Query: 62  LLCLVVVLQLAGVVSILEEFCGFKAMGEEGFCYKDN 98
           LL LVVVLQL+GVVS+LEE  GFKAM +     K+N
Sbjct: 177 LLYLVVVLQLSGVVSVLEESSGFKAMAKSRLLLKEN 212

[Close]

BLAST of CsGy6G002830 vs. TrEMBL
Match: tr|A0A0A0KJQ4|A0A0A0KJQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421800 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.0e-19
Identity = 60/96 (62.50%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 2   DTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFVG 61
           DTMSVV  V KR+LVT LC I V L+ H I   ALF+I+LP G+VD T++GVAF+FYF+G
Sbjct: 117 DTMSVVVTVWKRLLVTFLCVILVFLIYHMIVGLALFIIILPLGEVDRTTLGVAFLFYFIG 176

Query: 62  LLCLVVVLQLAGVVSILEEFCGFKAMGEEGFCYKDN 98
           L  LVVVLQLAGVVS+LEE  GFKAM       K+N
Sbjct: 177 LFYLVVVLQLAGVVSVLEESRGFKAMENSRLLLKEN 212

The following BLAST results are available for this feature:

BLAST of CsGy6G002830 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45905.1	2.9e-37	100.00	hypothetical protein Csa_6G020190 [Cucumis sativus]	[more]
KGN45906.1	1.5e-25	100.00	hypothetical protein Csa_6G020200 [Cucumis sativus]	[more]
KGN45909.1	9.3e-20	65.63	hypothetical protein Csa_6G020230 [Cucumis sativus] >KGN45910.1 hypothetical pro...	[more]
XP_008464353.1	2.1e-19	63.54	PREDICTED: uncharacterized protein LOC103502262 [Cucumis melo]	[more]
KGN47986.1	6.0e-19	62.50	hypothetical protein Csa_6G421800 [Cucumis sativus]	[more]

BLAST of CsGy6G002830 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy6G002830 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G002830 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K815\|A0A0A0K815_CUCSA	1.9e-37	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020190 PE=4 SV=1	[more]
tr\|A0A0A0KDQ0\|A0A0A0KDQ0_CUCSA	9.7e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020200 PE=4 SV=1	[more]
tr\|A0A0A0K819\|A0A0A0K819_CUCSA	6.1e-20	65.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020230 PE=4 SV=1	[more]
tr\|A0A1S3CMT6\|A0A1S3CMT6_CUCME	1.4e-19	63.54	uncharacterized protein LOC103502262 OS=Cucumis melo OX=3656 GN=LOC103502262 PE=...	[more]
tr\|A0A0A0KJQ4\|A0A0A0KJQ4_CUCSA	4.0e-19	62.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421800 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G002830.1	CsGy6G002830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33133	FAMILY NOT NAMED	coord: 4..87
None	No IPR available	PANTHER	PTHR33133:SF5	SUBFAMILY NOT NAMED	coord: 4..87

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G002830	Csa6G020190	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G002830	CSPI06G02720	Wild cucumber (PI 183967)	cgybcpiB288
CsGy6G002830	CsaV3_6G002960	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G002830	Cla97C08G146720	Watermelon (97103) v2	cgybwmbB480
CsGy6G002830	Bhi04G001717	Wax gourd	cgybwgoB561

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G002830	Bottle gourd (USVL1VR-Ls)	cgyblsiB438
CsGy6G002830	Melon (DHL92) v3.5.1	cgybmeB409
CsGy6G002830	Melon (DHL92) v3.5.1	cgybmeB421
CsGy6G002830	Melon (DHL92) v3.6.1	cgybmedB413
CsGy6G002830	Watermelon (Charleston Gray)	cgybwcgB472
CsGy6G002830	Watermelon (97103) v1	cgybwmB434
CsGy6G002830	Watermelon (97103) v1	cgybwmB436
CsGy6G002830	Watermelon (97103) v1	cgybwmB446
CsGy6G002830	Watermelon (97103) v1	cgybwmB447
CsGy6G002830	Watermelon (97103) v2	cgybwmbB466