CsGy6G002510 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G002510
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	hypothetical protein
Location	Chr6 : 1866102 .. 1867915 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCCACTCTCGTCCTCGTCGCCAGTCTTTCTCTTTCGGTGTCGCCACTTCCATCTCTTTGGGTATGTACTAAGCTAGATGTTTAATTTTTCCTTAAAAATCTATTTTTCCCTCAAATCATGATTTTTTTTTTCTAAGGTCGTGGCTTGAAGTCACTCTGATGCTTTTCCTTTTTGTCTCTAAGCACATCCTTTGTCGTAGAATGACACTGAATCATTGAAGTATGCTTCTTTTAAAAGTTAATTTATGGATTCTGATGCGTGTTAATGTTTCGTATGAGTTAGTAGCATGATTTATCACATTGCATCTTTTTGTGGCAGTTTCTACTTTTAATTATATTCTTCCATTACATTAGTTTTCTTTCGATTTCGACGGAGAGATTAGATAAAGATGAGATTTTTTTTCGATTTCGACAGGGATTCGGTAAAGATGAAGGGAAAGTATTTTAAAAAAAGAACATAGAGGATATCCCGATGAACAATTTGTGAATCAGGAGATCATAGAGGATATCCTGAAGCCGTTATGGACATCATCGGGATATCCTCTCCCTACTCTCATCCTGACGAACTTTTCTACGTTAGAAGATCCTTTTCCGACGGGTTTTGTATATCTCTTGATGCTTGAGTGCGTTGGAAGATCATCATTTTCTTGTAATGCTAGTTTTCTTTAATTTAAAATAATACCAACTTTGGCCAACACCTCAAAATGGCATGAATCATTTTAACAACCAAAACCAATTTTAGAAAATTACCACATTTAGTATTTCTCTACCAAAACTTTAAAAGTAGTTAAATGACATATTTTTTTAAAAATAAATGTGGTTAATCACAAAACTTAAAAAATGAGAGTTGCAAACATTAATCTAGTAATTAAATTTATTTTAAATAAGGTCAGACAAAATTAGGTGCCTTTAACCTAATTATTCAAATAGCAAAACAAATGGTAACAACGTGAATATAATTACCTAGTTAGGTAGGAAAATCTTGTTTTAATTATCCTTTTATATGTTTAACCCAAGTTTACAAAAGTGTAGTATATGATGGATAAGAAATGAAATTTTAACTTTTATATGTATATATTTTAATAAGAATAAATAATTTATATTTAAAAATTAAAACATATATACAAAATAAACTTTAACATTATAATATGCTACTTTATTTTGATATTTATGTAGGGTTGATGAGATGGTTAAATTGTCCCACAAAATAGAATTGAAATCATTCAAAGTGTACCAAGCAAATGATTCTTTTAGTCAACATGTTTGTTAAAGCAATGGAGGAAATGAAAAGTGTTTTAATAATTAGCCTACAAACTAACATTTTATGTTTCTTGCACAGTGAATTTCACATAGCTTGAATCCAAAGATTCTTTCCTCTCCCAAGTCTTGTCTTTTCAATATAATGGTGCCCTTTTAATTATTCACTATAAAAACATCATTCTCATCTCCTTTCTCCTTAAACCAACACTCAAACATCCAAATTCAATCCTCCATCTAATTACTTCATCTACACCATGGGTGGCAACAGGCAAAAGAAATCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAGTCCAGAAGGGGTCGAAAAGGAGACCACTACGACCATGGTGGCGCTTGGCCGGACGAGATGCCGAGATCCAACAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGATTGCTGAACCTGGCATTGATCGAAAGGCCAAAGATTATATTGACAGGATTTATCGAAATCGTGTTTTTGAATCGGAGCGCCAAACTGTCACTATATCTCCCAATGGAACAAAATCCAATGTGTAA

mRNA sequence

ATGCGCCACTCTCGTCCTCGTCGCCAGTCTTTCTCTTTCGGTGTCGCCACTTCCATCTCTTTGGGTATGCAAAAGAAATCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAGTCCAGAAGGGGTCGAAAAGGAGACCACTACGACCATGGTGGCGCTTGGCCGGACGAGATGCCGAGATCCAACAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGATTGCTGAACCTGGCATTGATCGAAAGGCCAAAGATTATATTGACAGGATTTATCGAAATCGTGTTTTTGAATCGGAGCGCCAAACTGTCACTATATCTCCCAATGGAACAAAATCCAATGTGTAA

Coding sequence (CDS)

ATGCGCCACTCTCGTCCTCGTCGCCAGTCTTTCTCTTTCGGTGTCGCCACTTCCATCTCTTTGGGTATGCAAAAGAAATCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAGTCCAGAAGGGGTCGAAAAGGAGACCACTACGACCATGGTGGCGCTTGGCCGGACGAGATGCCGAGATCCAACAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGATTGCTGAACCTGGCATTGATCGAAAGGCCAAAGATTATATTGACAGGATTTATCGAAATCGTGTTTTTGAATCGGAGCGCCAAACTGTCACTATATCTCCCAATGGAACAAAATCCAATGTGTAA

Protein sequence

MRHSRPRRQSFSFGVATSISLGMQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV

Homology

[Close]

BLAST of CsGy6G002510 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_6G014900 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 1.6e-32
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 24  QKKSHSXXXXXXXXXXXXXXXXXXXXXGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDR 83
           QKKSHSXXXXXXXXXXXXXXXXXXXXXGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDR
Sbjct: 6   QKKSHSXXXXXXXXXXXXXXXXXXXXXGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDR 65

Query: 84  KAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 117
           KAKDYIDRIYRNRVFESERQTVTISPNGTKSNV
Sbjct: 66  KAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of CsGy6G002510 vs. NCBI nr
Match: KGN45867.1 (hypothetical protein Csa_6G014870 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 1.2e-30
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 24  QKKSHSXXXXXXXXXXXXXXXXXXXXXGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDR 83
           QKKSH XXXXXXXXXXXXXXXXXXXXXGGAW DEMPRSNKVWPSDEDKAHHW+AEPGIDR
Sbjct: 6   QKKSHXXXXXXXXXXXXXXXXXXXXXXGGAWLDEMPRSNKVWPSDEDKAHHWVAEPGIDR 65

Query: 84  KAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 117
           KAKDYIDRIYRNRVFESERQTVTISPNGTKSNV
Sbjct: 66  KAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of CsGy6G002510 vs. NCBI nr
Match: KGN45869.1 (hypothetical protein Csa_6G014890 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 63/93 (67.74%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 24  QKKSHSXXXXXXXXXXXXXXXXXXXXXGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDR 83
           QKK+H+                      G+  DEMPRS KVWPSDEDKAHHW+AEPGIDR
Sbjct: 7   QKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEPGIDR 66

Query: 84  KAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 117
           KAKDYIDRIYRNRVFESERQTVTISPNG KSNV
Sbjct: 67  KAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of CsGy6G002510 vs. NCBI nr
Match: KGN45868.1 (hypothetical protein Csa_6G014880 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 4.0e-23
Identity = 57/86 (66.28%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 25  KKSHSXXXXXXXXXXXXXXXXXXXXXGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDRK 84
           KKSHS                     GG+W DE  RS KVWPSDEDKAHHW+AEPGIDRK
Sbjct: 7   KKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEPGIDRK 66

Query: 85  AKDYIDRIYRNRVFESERQTVTISPN 111
           AKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 67  AKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]

BLAST of CsGy6G002510 vs. NCBI nr
Match: KGN45873.1 (hypothetical protein Csa_6G016905 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 3.8e-21
Identity = 55/93 (59.14%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 24  QKKSHSXXXXXXXXXXXXXXXXXXXXXGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDR 83
           QKK+HS                     G  W D +P S+KVWPSDEDK + W+AEPGIDR
Sbjct: 7   QKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWED-VPSSSKVWPSDEDKGYRWVAEPGIDR 66

Query: 84  KAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 117
           KAKDYIDRIY+NRVFE+ERQTVTI PNG  SNV
Sbjct: 67  KAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

[Close]

BLAST of CsGy6G002510 vs. TAIR10
Match: AT5G26620.1 (unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 3.1e-09
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 56  DEMPRSNKVWPSDEDKAHHWIAEPGIDRKAKDYIDRIYRNRVFESERQTV 106
           D++  + K W SDEDK  +W+AEPGIDRKA  +I + + +RV ESERQT+
Sbjct: 18  DDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESERQTL 66

[Close]

BLAST of CsGy6G002510 vs. TAIR10
Match: AT3G05858.1 (unknown protein)

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-08
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 52  GAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDRKAKDYIDRIYRNRVFESERQTVT 107
           G+W D+   + K   SDEDK  +W+AEPGIDRKA  +I + +  RV ESERQT++
Sbjct: 31  GSW-DDFGYTRKAMASDEDK-RYWVAEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of CsGy6G002510 vs. TrEMBL
Match: tr|A0A0A0K7Y2|A0A0A0K7Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-32
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 24  QKKSHSXXXXXXXXXXXXXXXXXXXXXGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDR 83
           QKKSHSXXXXXXXXXXXXXXXXXXXXXGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDR
Sbjct: 6   QKKSHSXXXXXXXXXXXXXXXXXXXXXGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDR 65

Query: 84  KAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 117
           KAKDYIDRIYRNRVFESERQTVTISPNGTKSNV
Sbjct: 66  KAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of CsGy6G002510 vs. TrEMBL
Match: tr|A0A0A0KBW1|A0A0A0KBW1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 7.7e-31
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 24  QKKSHSXXXXXXXXXXXXXXXXXXXXXGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDR 83
           QKKSH XXXXXXXXXXXXXXXXXXXXXGGAW DEMPRSNKVWPSDEDKAHHW+AEPGIDR
Sbjct: 6   QKKSHXXXXXXXXXXXXXXXXXXXXXXGGAWLDEMPRSNKVWPSDEDKAHHWVAEPGIDR 65

Query: 84  KAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 117
           KAKDYIDRIYRNRVFESERQTVTISPNGTKSNV
Sbjct: 66  KAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of CsGy6G002510 vs. TrEMBL
Match: tr|A0A0A0KAK6|A0A0A0KAK6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 8.8e-27
Identity = 63/93 (67.74%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 24  QKKSHSXXXXXXXXXXXXXXXXXXXXXGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDR 83
           QKK+H+                      G+  DEMPRS KVWPSDEDKAHHW+AEPGIDR
Sbjct: 7   QKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEPGIDR 66

Query: 84  KAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 117
           KAKDYIDRIYRNRVFESERQTVTISPNG KSNV
Sbjct: 67  KAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of CsGy6G002510 vs. TrEMBL
Match: tr|A0A0A0K8V3|A0A0A0K8V3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.7e-23
Identity = 57/86 (66.28%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 25  KKSHSXXXXXXXXXXXXXXXXXXXXXGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDRK 84
           KKSHS                     GG+W DE  RS KVWPSDEDKAHHW+AEPGIDRK
Sbjct: 7   KKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEPGIDRK 66

Query: 85  AKDYIDRIYRNRVFESERQTVTISPN 111
           AKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 67  AKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]

BLAST of CsGy6G002510 vs. TrEMBL
Match: tr|A0A0A0K8W0|A0A0A0K8W0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.5e-21
Identity = 55/93 (59.14%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 24  QKKSHSXXXXXXXXXXXXXXXXXXXXXGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDR 83
           QKK+HS                     G  W D +P S+KVWPSDEDK + W+AEPGIDR
Sbjct: 7   QKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWED-VPSSSKVWPSDEDKGYRWVAEPGIDR 66

Query: 84  KAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 117
           KAKDYIDRIY+NRVFE+ERQTVTI PNG  SNV
Sbjct: 67  KAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

The following BLAST results are available for this feature:

BLAST of CsGy6G002510 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45870.1	1.6e-32	100.00	hypothetical protein Csa_6G014900 [Cucumis sativus]	[more]
KGN45867.1	1.2e-30	96.77	hypothetical protein Csa_6G014870 [Cucumis sativus]	[more]
KGN45869.1	1.3e-26	67.74	hypothetical protein Csa_6G014890 [Cucumis sativus]	[more]
KGN45868.1	4.0e-23	66.28	hypothetical protein Csa_6G014880 [Cucumis sativus]	[more]
KGN45873.1	3.8e-21	59.14	hypothetical protein Csa_6G016905 [Cucumis sativus]	[more]

BLAST of CsGy6G002510 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26620.1	3.1e-09	54.00	unknown protein	[more]
AT3G05858.1	2.0e-08	50.91	unknown protein	[more]

BLAST of CsGy6G002510 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G002510 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K7Y2\|A0A0A0K7Y2_CUCSA	1.1e-32	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
tr\|A0A0A0KBW1\|A0A0A0KBW1_CUCSA	7.7e-31	96.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
tr\|A0A0A0KAK6\|A0A0A0KAK6_CUCSA	8.8e-27	67.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]
tr\|A0A0A0K8V3\|A0A0A0K8V3_CUCSA	2.7e-23	66.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1	[more]
tr\|A0A0A0K8W0\|A0A0A0K8W0_CUCSA	2.5e-21	59.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G002510.1	CsGy6G002510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..66
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 24..104

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G002510	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G002510	Watermelon (97103) v2	cgybwmbB466
CsGy6G002510	Wax gourd	cgybwgoB561
CsGy6G002510	Cucurbita maxima (Rimu)	cgybcmaB700
CsGy6G002510	Cucurbita maxima (Rimu)	cgybcmaB774
CsGy6G002510	Cucurbita maxima (Rimu)	cgybcmaB777
CsGy6G002510	Cucurbita moschata (Rifu)	cgybcmoB683
CsGy6G002510	Cucurbita moschata (Rifu)	cgybcmoB753
CsGy6G002510	Cucurbita pepo (Zucchini)	cgybcpeB822
CsGy6G002510	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G002510	Bottle gourd (USVL1VR-Ls)	cgyblsiB438
CsGy6G002510	Melon (DHL92) v3.5.1	cgybmeB409
CsGy6G002510	Melon (DHL92) v3.6.1	cgybmedB413
CsGy6G002510	Watermelon (Charleston Gray)	cgybwcgB457
CsGy6G002510	Watermelon (97103) v1	cgybwmB446
CsGy6G002510	Wild cucumber (PI 183967)	cgybcpiB288