CsGy6G001940 (gene) Cucumber (Gy14) v2

NameCsGy6G001940
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr6 : 1365015 .. 1365335 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTAGGTCGGCCACAACCACGGTCTGTTGTGCAATCCAACAAACATTGGTTGAATGGAATGCTCCAAATGGAGGCTAAAAGGCATCATCAAGATTTGTATGAGGGGTTGCTTCACCAAAATAACAACAATATGGATGCTACTGTAACAGAAGTTTTTATCAATAAAACTCCCATCCAAACAAAGGATCTCATTCTTACTATGGTTGCAAACACTCCACAGTTTGGAACAAGGGCCTCAATCAACGTTAAATCTGCATCTAAGGTAATAAGCAATTTAAAAGAGCAAATTTCTACCTTAGTTGTTGCTGTTAAATAG

mRNA sequence

ATGAAGGTAGGTCGGCCACAACCACGGTCTGTTGTGCAATCCAACAAACATTGGTTGAATGGAATGCTCCAAATGGAGGCTAAAAGGCATCATCAAGATTTGTATGAGGGGTTGCTTCACCAAAATAACAACAATATGGATGCTACTGTAACAGAAGTTTTTATCAATAAAACTCCCATCCAAACAAAGGATCTCATTCTTACTATGGTTGCAAACACTCCACAGTTTGGAACAAGGGCCTCAATCAACGTTAAATCTGCATCTAAGGTAATAAGCAATTTAAAAGAGCAAATTTCTACCTTAGTTGTTGCTGTTAAATAG

Coding sequence (CDS)

ATGAAGGTAGGTCGGCCACAACCACGGTCTGTTGTGCAATCCAACAAACATTGGTTGAATGGAATGCTCCAAATGGAGGCTAAAAGGCATCATCAAGATTTGTATGAGGGGTTGCTTCACCAAAATAACAACAATATGGATGCTACTGTAACAGAAGTTTTTATCAATAAAACTCCCATCCAAACAAAGGATCTCATTCTTACTATGGTTGCAAACACTCCACAGTTTGGAACAAGGGCCTCAATCAACGTTAAATCTGCATCTAAGGTAATAAGCAATTTAAAAGAGCAAATTTCTACCTTAGTTGTTGCTGTTAAATAG

Protein sequence

MKVGRPQPRSVVQSNKHWLNGMLQMEAKRHHQDLYEGLLHQNNNNMDATVTEVFINKTPIQTKDLILTMVANTPQFGTRASINVKSASKVISNLKEQISTLVVAVK
BLAST of CsGy6G001940 vs. NCBI nr
Match: KGN45804.1 (hypothetical protein Csa_6G012290 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 2.1e-34
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 25  MEAKRHHQDLYEGLLHQNNNNMDATVTEVFINKTPIQTKDLILTMVANTPQFGTRASINV 84
           MEAKRHHQDLYEGLLHQNNNNMDATVTEVFINKTPIQTKDLILTMVANTPQFGTRASINV
Sbjct: 1   MEAKRHHQDLYEGLLHQNNNNMDATVTEVFINKTPIQTKDLILTMVANTPQFGTRASINV 60

Query: 85  KSASKVISNLKEQISTLVVAVK 107
           KSASKVISNLKEQIS+LVVAVK
Sbjct: 61  KSASKVISNLKEQISSLVVAVK 82

BLAST of CsGy6G001940 vs. TrEMBL
Match: tr|A0A0A0KAE3|A0A0A0KAE3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G012290 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.4e-34
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 25  MEAKRHHQDLYEGLLHQNNNNMDATVTEVFINKTPIQTKDLILTMVANTPQFGTRASINV 84
           MEAKRHHQDLYEGLLHQNNNNMDATVTEVFINKTPIQTKDLILTMVANTPQFGTRASINV
Sbjct: 1   MEAKRHHQDLYEGLLHQNNNNMDATVTEVFINKTPIQTKDLILTMVANTPQFGTRASINV 60

Query: 85  KSASKVISNLKEQISTLVVAVK 107
           KSASKVISNLKEQIS+LVVAVK
Sbjct: 61  KSASKVISNLKEQISSLVVAVK 82

BLAST of CsGy6G001940 vs. TrEMBL
Match: tr|A0A1U8BCW4|A0A1U8BCW4_NELNU (uncharacterized protein LOC104613275 OS=Nelumbo nucifera OX=4432 GN=LOC104613275 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.6e-04
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 32  QDLYEGLLHQNNNNMDATVTEVFINKTPIQTKDLILTMVANTPQFGTRASINVKSASKV- 91
           Q  YEGLL  + + +DA    V ++KTP Q ++LIL M AN+ QFG R +     A+K  
Sbjct: 226 QYFYEGLLSMDRSMIDAASGGVLVDKTPTQARELILNMAANSQQFGYRLNPPANHANKEN 285

Query: 92  ISNLKEQISTLVVAVK 107
           IS+L++QI++L   V+
Sbjct: 286 ISSLEQQIASLTSLVR 301

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN45804.12.1e-3498.78hypothetical protein Csa_6G012290 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KAE3|A0A0A0KAE3_CUCSA1.4e-3498.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G012290 PE=4 SV=1[more]
tr|A0A1U8BCW4|A0A1U8BCW4_NELNU9.6e-0442.11uncharacterized protein LOC104613275 OS=Nelumbo nucifera OX=4432 GN=LOC104613275... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G001940.1CsGy6G001940.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy6G001940Csa6G012290Cucumber (Chinese Long) v2cgybcuB282
CsGy6G001940CSPI06G01830Wild cucumber (PI 183967)cgybcpiB288
CsGy6G001940CsaV3_6G001970Cucumber (Chinese Long) v3cgybcucB298
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy6G001940Wax gourdcgybwgoB558
CsGy6G001940Cucumber (Gy14) v2cgybcgybB130
CsGy6G001940Cucumber (Gy14) v2cgybcgybB145
CsGy6G001940Cucurbita maxima (Rimu)cgybcmaB737
CsGy6G001940Cucurbita maxima (Rimu)cgybcmaB741
CsGy6G001940Cucurbita maxima (Rimu)cgybcmaB832
CsGy6G001940Cucurbita maxima (Rimu)cgybcmaB836
CsGy6G001940Cucurbita maxima (Rimu)cgybcmaB840
CsGy6G001940Cucurbita maxima (Rimu)cgybcmaB842
CsGy6G001940Cucurbita maxima (Rimu)cgybcmaB859
CsGy6G001940Cucurbita maxima (Rimu)cgybcmaB860
CsGy6G001940Cucurbita moschata (Rifu)cgybcmoB722
CsGy6G001940Cucurbita moschata (Rifu)cgybcmoB812
CsGy6G001940Cucurbita moschata (Rifu)cgybcmoB816
CsGy6G001940Cucurbita moschata (Rifu)cgybcmoB820
CsGy6G001940Cucurbita moschata (Rifu)cgybcmoB841
CsGy6G001940Cucurbita moschata (Rifu)cgybcmoB842
CsGy6G001940Cucurbita pepo (Zucchini)cgybcpeB711
CsGy6G001940Cucurbita pepo (Zucchini)cgybcpeB741
CsGy6G001940Cucurbita pepo (Zucchini)cgybcpeB798
CsGy6G001940Cucurbita pepo (Zucchini)cgybcpeB803
CsGy6G001940Cucurbita pepo (Zucchini)cgybcpeB812
CsGy6G001940Cucurbita pepo (Zucchini)cgybcpeB835
CsGy6G001940Cucurbita pepo (Zucchini)cgybcpeB886
CsGy6G001940Cucumber (Chinese Long) v2cgybcuB270
CsGy6G001940Cucumber (Chinese Long) v2cgybcuB277
CsGy6G001940Bottle gourd (USVL1VR-Ls)cgyblsiB396
CsGy6G001940Bottle gourd (USVL1VR-Ls)cgyblsiB409
CsGy6G001940Bottle gourd (USVL1VR-Ls)cgyblsiB424
CsGy6G001940Melon (DHL92) v3.5.1cgybmeB398
CsGy6G001940Melon (DHL92) v3.5.1cgybmeB407
CsGy6G001940Melon (DHL92) v3.5.1cgybmeB450
CsGy6G001940Melon (DHL92) v3.6.1cgybmedB406
CsGy6G001940Melon (DHL92) v3.6.1cgybmedB445
CsGy6G001940Watermelon (Charleston Gray)cgybwcgB397
CsGy6G001940Watermelon (Charleston Gray)cgybwcgB429
CsGy6G001940Watermelon (Charleston Gray)cgybwcgB451
CsGy6G001940Watermelon (97103) v1cgybwmB452
CsGy6G001940Watermelon (97103) v1cgybwmB455
CsGy6G001940Watermelon (97103) v1cgybwmB476
CsGy6G001940Watermelon (97103) v1cgybwmB497
CsGy6G001940Wild cucumber (PI 183967)cgybcpiB277
CsGy6G001940Silver-seed gourdcarcgybB0023
CsGy6G001940Silver-seed gourdcarcgybB0284
CsGy6G001940Silver-seed gourdcarcgybB0562
CsGy6G001940Silver-seed gourdcarcgybB0673
CsGy6G001940Cucumber (Chinese Long) v3cgybcucB283
CsGy6G001940Cucumber (Chinese Long) v3cgybcucB292
CsGy6G001940Watermelon (97103) v2cgybwmbB403
CsGy6G001940Watermelon (97103) v2cgybwmbB435
CsGy6G001940Watermelon (97103) v2cgybwmbB459