CsGy6G001220 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G001220
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
Location	Chr6 : 866231 .. 868368 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAACTTCTTCTTTCAAACAGTTAGTGAAACAACTTCCAAATTCCTCTCAAAACCCATGGCCACCGCCGGAGCCGTCAACAGAATTCCGGTAATAAATCTTTCCCACCATCACATTACTTTACAACAACCCAAACCACCCCAATCTTCTCTGCTTTTTCTTATTAGAATTCTTGAGTTTTATGGATTAGATCATCGGAAAGATTTCAAATTTTTTACTTCACTTGTTAAATTATGTTGAGAATTTGTGATTATGTTTAGTTGGGTATATTGCAGCTGAGTTTAAATGGTGCCATTGCTGGGCCTTCAGTTCAAAGCTCTGCTTTCTTAGGCAGCAGCTTGAAGAAAGCAAACTTCAGATTTCCCAGTTCAAAGGTCTCCTCAGGAAGTAGCTTCAAGGTAGTTGCTGTTGCAGAGGAGATTGATGAAAAGAAACAAACTAGCAAGGATAAATGGAAGGGGCTTGCTTTTGATGTATCTGATGATCAACAAGACATTACCAGAGGAAAAGGAATGGTTGACACACTCTTTCAAGCTCCTTCTGGAGCAGGAACTCATGATCCTGTTCTTAGTTCTTATGAATATTTAAGTGCTGGACTTCGTCAGTAAGTGTTCGAAAAAGAGTAGATCTTTTTTATGTTTGTTTATCTATGGTTTAGTAATGAATAGAACTGACGATCTTCAATGCTTGTGGTGTTGATTTTGATGATGATATAGGTACAATTTCGACAACAATGTGGATGGTTTTTACATTGCTCCTGCTTTTATGGACAAACTAGTTGTTCATATCTCTAAGAATTTCATGAAACTTCCCAACATCAAGGTTCAATTCTACAGAAAACTGATTTACTGTTTGTGTTTGGTGGTTTCATTGCTGGGTTTGGCTATTTCTTTTGTTTGTTGATTTGATTGATTTAATCATTCTTCATTAGGTTCCTCTGATTTTGGGTATTTGGGGAGGCAAAGGTCAAGGAAAGTCCTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAAGTTCGTTTCATCCATCCCCGTCCTTTTTGTTTTAGCCACTTCAACTGTTGTATGCTAACATTTCGTTTCATTATTTCAGCCCCATTATGATGAGTGCAGGAGAATTGGAGAGTGGTAATGCAGGAGAACCGGCGAAACTGATTCGACAGAGGTACCGTGAAGCAGCAGACATAATCAAGAAGGGGAAAATGTGTGCCCTCTTCATCAATGATCTCGATGCAGGAGCTGGTCGTCTCGGTGGCACTACCCAATACACTGTCAACAACCAGATGGTAAATGCTACCCTCATGAACATAGCCGATAACCCAACCAATGTCCAGCTACCTGGTATGTACAACAAAGAGGAGAACCCTCGTGTTCCCATCATTGTCACGGGTAATGACTTCTCGACGTTGTATGCTCCTCTCATCCGTGATGGTCGTATGGAAAAATTCTATTGGGCACCTACTCGGGAAGATCGAATTGGTGTCTGTTCAGGAATCTTTAGGAGCGACAACATTCCTAAAGAAGACATCGTCAAGCTTGTAGATACCTTCCCTGGCCAATCCATTGGTAAGCTTCAAGTGTAAACTATAAGTCAATATTTTGATTCATTTCTCTCCTATTAAACTAAACCATGATCATACAGATTTCTTTGGTGCCCTAAGGGCAAGAGTATACGACGATGAAGTGAGGAACTGGGTTTGTTCGGTCGGAGTAGAGAATATCGCTAAGAAACTTGTCAACTCAAAGGAAGGACCACCAACATTCGAGCAGCCAAAGATGACCCTAGAGAAGCTCCTTGAGTATGGAAACATGCTTGTTCAGGAACAAGAGAATGTGAAGAGAGTCCAATTGGCTGACAAGTACTTGAGCGAGGCTGCTCTTGGAGATGCCAATGAAGATGCCATAAAAAGTGGCACATTCTATGGTTAGCTCTCTTTTGGTCTTCTATAGGTGTTTAATTAATAAGTATAAAAGAAAAAACAAAAACAGCTTCTCCTAAACTGTTGTTTTTGGTTGCAGGCAAAGCCGCACAGCAGGTGAGTTTGCCTATTCCTGAAGGATGTACAGACCCAAATGCAGATAACTTCGACCCAACAGCCAGGAGTGATGATGGAAGCTGCAATTATGTATTATAA

mRNA sequence

ATCAACTTCTTCTTTCAAACAGTTAGTGAAACAACTTCCAAATTCCTCTCAAAACCCATGGCCACCGCCGGAGCCGTCAACAGAATTCCGCTGAGTTTAAATGGTGCCATTGCTGGGCCTTCAGTTCAAAGCTCTGCTTTCTTAGGCAGCAGCTTGAAGAAAGCAAACTTCAGATTTCCCAGTTCAAAGGTCTCCTCAGGAAGTAGCTTCAAGGTAGTTGCTGTTGCAGAGGAGATTGATGAAAAGAAACAAACTAGCAAGGATAAATGGAAGGGGCTTGCTTTTGATGTATCTGATGATCAACAAGACATTACCAGAGGAAAAGGAATGGTTGACACACTCTTTCAAGCTCCTTCTGGAGCAGGAACTCATGATCCTGTTCTTAGTTCTTATGAATATTTAAGTGCTGGACTTCGTCAGTACAATTTCGACAACAATGTGGATGGTTTTTACATTGCTCCTGCTTTTATGGACAAACTAGTTGTTCATATCTCTAAGAATTTCATGAAACTTCCCAACATCAAGGTTCCTCTGATTTTGGGTATTTGGGGAGGCAAAGGTCAAGGAAAGTCCTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATTATGATGAGTGCAGGAGAATTGGAGAGTGGTAATGCAGGAGAACCGGCGAAACTGATTCGACAGAGGTACCGTGAAGCAGCAGACATAATCAAGAAGGGGAAAATGTGTGCCCTCTTCATCAATGATCTCGATGCAGGAGCTGGTCGTCTCGGTGGCACTACCCAATACACTGTCAACAACCAGATGGTAAATGCTACCCTCATGAACATAGCCGATAACCCAACCAATGTCCAGCTACCTGGTATGTACAACAAAGAGGAGAACCCTCGTGTTCCCATCATTGTCACGGGTAATGACTTCTCGACGTTGTATGCTCCTCTCATCCGTGATGGTCGTATGGAAAAATTCTATTGGGCACCTACTCGGGAAGATCGAATTGGTGTCTGTTCAGGAATCTTTAGGAGCGACAACATTCCTAAAGAAGACATCGTCAAGCTTGTAGATACCTTCCCTGGCCAATCCATTGATTTCTTTGGTGCCCTAAGGGCAAGAGTATACGACGATGAAGTGAGGAACTGGGTTTGTTCGGTCGGAGTAGAGAATATCGCTAAGAAACTTGTCAACTCAAAGGAAGGACCACCAACATTCGAGCAGCCAAAGATGACCCTAGAGAAGCTCCTTGAGTATGGAAACATGCTTGTTCAGGAACAAGAGAATGTGAAGAGAGTCCAATTGGCTGACAAGTACTTGAGCGAGGCTGCTCTTGGAGATGCCAATGAAGATGCCATAAAAAGTGGCACATTCTATGGCAAAGCCGCACAGCAGGTGAGTTTGCCTATTCCTGAAGGATGTACAGACCCAAATGCAGATAACTTCGACCCAACAGCCAGGAGTGATGATGGAAGCTGCAATTATGTATTATAA

Coding sequence (CDS)

ATGGCCACCGCCGGAGCCGTCAACAGAATTCCGCTGAGTTTAAATGGTGCCATTGCTGGGCCTTCAGTTCAAAGCTCTGCTTTCTTAGGCAGCAGCTTGAAGAAAGCAAACTTCAGATTTCCCAGTTCAAAGGTCTCCTCAGGAAGTAGCTTCAAGGTAGTTGCTGTTGCAGAGGAGATTGATGAAAAGAAACAAACTAGCAAGGATAAATGGAAGGGGCTTGCTTTTGATGTATCTGATGATCAACAAGACATTACCAGAGGAAAAGGAATGGTTGACACACTCTTTCAAGCTCCTTCTGGAGCAGGAACTCATGATCCTGTTCTTAGTTCTTATGAATATTTAAGTGCTGGACTTCGTCAGTACAATTTCGACAACAATGTGGATGGTTTTTACATTGCTCCTGCTTTTATGGACAAACTAGTTGTTCATATCTCTAAGAATTTCATGAAACTTCCCAACATCAAGGTTCCTCTGATTTTGGGTATTTGGGGAGGCAAAGGTCAAGGAAAGTCCTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATTATGATGAGTGCAGGAGAATTGGAGAGTGGTAATGCAGGAGAACCGGCGAAACTGATTCGACAGAGGTACCGTGAAGCAGCAGACATAATCAAGAAGGGGAAAATGTGTGCCCTCTTCATCAATGATCTCGATGCAGGAGCTGGTCGTCTCGGTGGCACTACCCAATACACTGTCAACAACCAGATGGTAAATGCTACCCTCATGAACATAGCCGATAACCCAACCAATGTCCAGCTACCTGGTATGTACAACAAAGAGGAGAACCCTCGTGTTCCCATCATTGTCACGGGTAATGACTTCTCGACGTTGTATGCTCCTCTCATCCGTGATGGTCGTATGGAAAAATTCTATTGGGCACCTACTCGGGAAGATCGAATTGGTGTCTGTTCAGGAATCTTTAGGAGCGACAACATTCCTAAAGAAGACATCGTCAAGCTTGTAGATACCTTCCCTGGCCAATCCATTGATTTCTTTGGTGCCCTAAGGGCAAGAGTATACGACGATGAAGTGAGGAACTGGGTTTGTTCGGTCGGAGTAGAGAATATCGCTAAGAAACTTGTCAACTCAAAGGAAGGACCACCAACATTCGAGCAGCCAAAGATGACCCTAGAGAAGCTCCTTGAGTATGGAAACATGCTTGTTCAGGAACAAGAGAATGTGAAGAGAGTCCAATTGGCTGACAAGTACTTGAGCGAGGCTGCTCTTGGAGATGCCAATGAAGATGCCATAAAAAGTGGCACATTCTATGGCAAAGCCGCACAGCAGGTGAGTTTGCCTATTCCTGAAGGATGTACAGACCCAAATGCAGATAACTTCGACCCAACAGCCAGGAGTGATGATGGAAGCTGCAATTATGTATTATAA

Protein sequence

MATAGAVNRIPLSLNGAIAGPSVQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEEIDEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGLRQYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWVCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYVL

Homology

[Close]

BLAST of CsGy6G001220 vs. NCBI nr
Match: XP_004138462.1 (PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Cucumis sativus] >KGN45737.1 hypothetical protein Csa_6G008680 [Cucumis sativus])

HSP 1 Score: 950.7 bits (2456), Expect = 1.9e-273
Identity = 474/474 (100.00%), Postives = 474/474 (100.00%), Query Frame = 0


Query: 1   MATAGAVNRIPLSLNGAIAGPSVQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEEI 60
           MATAGAVNRIPLSLNGAIAGPSVQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEEI
Sbjct: 1   MATAGAVNRIPLSLNGAIAGPSVQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEEI 60

Query: 61  DEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGLR 120
           DEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGLR
Sbjct: 61  DEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGLR 120

Query: 121 QYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFA 180
           QYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFA
Sbjct: 121 QYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFA 180

Query: 181 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGT 240
           KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGT
Sbjct: 181 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGT 240

Query: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 300
           TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 300

Query: 301 EKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRNW 360
           EKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRNW
Sbjct: 301 EKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRNW 360

Query: 361 VCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA 420
           VCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA
Sbjct: 361 VCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA 420

Query: 421 ALGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYVL 475
           ALGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYVL
Sbjct: 421 ALGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYVL 474

[Close]

BLAST of CsGy6G001220 vs. NCBI nr
Match: XP_008441387.1 (PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Cucumis melo] >ADN34076.1 ribulose bisphosphate carboxylase/oxygenase activase 1 [Cucumis melo subsp. melo])

HSP 1 Score: 921.0 bits (2379), Expect = 1.6e-264
Identity = 456/473 (96.41%), Postives = 466/473 (98.52%), Query Frame = 0


Query: 1   MATAGAVNRIPLSLNGAIAGPSVQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEEI 60
           MATAGAVNRIPLSLNGAIAGPSVQSS FLGS+LKKANFRFP+SKVSSGSSFKVVAVAEEI
Sbjct: 1   MATAGAVNRIPLSLNGAIAGPSVQSSTFLGSNLKKANFRFPNSKVSSGSSFKVVAVAEEI 60

Query: 61  DEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGLR 120
           DEKKQT+KDKWKGLAFD+SDDQQDITRGKGMVD+LFQAP+GAGTHDPVLSSYEYLSAGLR
Sbjct: 61  DEKKQTNKDKWKGLAFDISDDQQDITRGKGMVDSLFQAPTGAGTHDPVLSSYEYLSAGLR 120

Query: 121 QYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFA 180
           QYN DN+V+GFYIAPAFMDKLVVHI+KNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFA
Sbjct: 121 QYNLDNDVEGFYIAPAFMDKLVVHITKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFA 180

Query: 181 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGT 240
           KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGT
Sbjct: 181 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGT 240

Query: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 300
           TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 300

Query: 301 EKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRNW 360
           EKFYWAPTREDRIGVCSGIFRSDNIPKEDI+KLVDTFPGQSIDFFGALRARVYDDEVR W
Sbjct: 301 EKFYWAPTREDRIGVCSGIFRSDNIPKEDIIKLVDTFPGQSIDFFGALRARVYDDEVRKW 360

Query: 361 VCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA 420
             SVGVENIAKKLVNSKEGPPT EQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA
Sbjct: 361 ASSVGVENIAKKLVNSKEGPPTLEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA 420

Query: 421 ALGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYV 474
           ALGDANEDAIK GTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYV
Sbjct: 421 ALGDANEDAIKRGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYV 473

[Close]

BLAST of CsGy6G001220 vs. NCBI nr
Match: XP_022955346.1 (ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Cucurbita moschata] >XP_023552446.1 ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 891.0 bits (2301), Expect = 1.8e-255
Identity = 435/474 (91.77%), Postives = 459/474 (96.84%), Query Frame = 0


Query: 1   MATAGAVNRIPLSLNGAIAGPSVQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEEI 60
           ++TAGAVNRIP+SLNGAI+G SVQSSAFLGSSLKK N R+P+SKVS GSS KVVAVAEEI
Sbjct: 5   LSTAGAVNRIPVSLNGAISGASVQSSAFLGSSLKKVNSRYPNSKVSWGSSLKVVAVAEEI 64

Query: 61  DEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGLR 120
           DEKKQT KD+WKGLA+D+SDDQQDITRGKG+VD+LFQAP+GAGTHDPVLSSYEYLSAGLR
Sbjct: 65  DEKKQTDKDRWKGLAYDISDDQQDITRGKGLVDSLFQAPTGAGTHDPVLSSYEYLSAGLR 124

Query: 121 QYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFA 180
           QYN DNNVDGFYIAP+FMDKLVVHISKNFMKLPNIKVPLILG+WGGKGQGKSFQCELV A
Sbjct: 125 QYNLDNNVDGFYIAPSFMDKLVVHISKNFMKLPNIKVPLILGVWGGKGQGKSFQCELVLA 184

Query: 181 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGT 240
           KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGRLGGT
Sbjct: 185 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCVLFINDLDAGAGRLGGT 244

Query: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 300
           TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 245 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRM 304

Query: 301 EKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRNW 360
           EKFYWAPTREDRIGVC+GIFRSDN+PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR W
Sbjct: 305 EKFYWAPTREDRIGVCTGIFRSDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 364

Query: 361 VCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA 420
             SVGVENI+K+LVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA
Sbjct: 365 AASVGVENISKRLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA 424

Query: 421 ALGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYVL 475
           ALGDANED+IKSG FYGKAAQQV+ P+PEGCTDPNA+NFDPTARSD+GSCNY L
Sbjct: 425 ALGDANEDSIKSGAFYGKAAQQVNFPVPEGCTDPNAENFDPTARSDNGSCNYEL 478

[Close]

BLAST of CsGy6G001220 vs. NCBI nr
Match: XP_022991087.1 (ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Cucurbita maxima])

HSP 1 Score: 891.0 bits (2301), Expect = 1.8e-255
Identity = 435/474 (91.77%), Postives = 459/474 (96.84%), Query Frame = 0


Query: 1   MATAGAVNRIPLSLNGAIAGPSVQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEEI 60
           ++TAGAVNRIP+SLNGAI+G SVQSSAFLGSSLKK N R+P+SKVS GSS KVVAVAEEI
Sbjct: 5   LSTAGAVNRIPVSLNGAISGASVQSSAFLGSSLKKVNSRYPNSKVSWGSSLKVVAVAEEI 64

Query: 61  DEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGLR 120
           DEKKQT KD+WKGLA+D+SDDQQDITRGKG+VD+LFQAP+GAGTHDPVL+SYEYLSAGLR
Sbjct: 65  DEKKQTDKDRWKGLAYDISDDQQDITRGKGLVDSLFQAPTGAGTHDPVLNSYEYLSAGLR 124

Query: 121 QYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFA 180
           QYN DNNVDGFYIAP+FMDKLVVHISKNFMKLPNIKVPLILG+WGGKGQGKSFQCELV A
Sbjct: 125 QYNLDNNVDGFYIAPSFMDKLVVHISKNFMKLPNIKVPLILGVWGGKGQGKSFQCELVLA 184

Query: 181 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGT 240
           KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGRLGGT
Sbjct: 185 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCVLFINDLDAGAGRLGGT 244

Query: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 300
           TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 245 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRM 304

Query: 301 EKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRNW 360
           EKFYWAPTREDRIGVC+GIFRSDN+PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR W
Sbjct: 305 EKFYWAPTREDRIGVCTGIFRSDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 364

Query: 361 VCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA 420
             SVGVENI+K+LVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA
Sbjct: 365 AASVGVENISKRLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA 424

Query: 421 ALGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYVL 475
           ALGDANEDAIKSG FYGKAAQQV+ P+PEGCTDPNA+NFDPTARSD+GSCNY L
Sbjct: 425 ALGDANEDAIKSGAFYGKAAQQVNFPVPEGCTDPNAENFDPTARSDNGSCNYEL 478

[Close]

BLAST of CsGy6G001220 vs. NCBI nr
Match: XP_023550769.1 (ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 890.2 bits (2299), Expect = 3.1e-255
Identity = 438/475 (92.21%), Postives = 459/475 (96.63%), Query Frame = 0


Query: 1   MATAGAVNRIPLSLNGAIAGPSVQSSAFLGSSLKKANFRFPSSKVSSGSS-FKVVAVAEE 60
           ++TAGAVN + LSLNGAIAG SVQ+SAFLGSSLKKANFR+P+SKVSSG S  KVVAVAE+
Sbjct: 5   VSTAGAVNGVSLSLNGAIAGASVQNSAFLGSSLKKANFRYPNSKVSSGRSLMKVVAVAED 64

Query: 61  IDEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGL 120
           IDEKKQT KD+WKGLA+D+SDDQQDITRGKGMVD+LFQAP+GAGTHDPVLSSYEYLSAGL
Sbjct: 65  IDEKKQTDKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPTGAGTHDPVLSSYEYLSAGL 124

Query: 121 RQYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVF 180
           RQYN DN VDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVF
Sbjct: 125 RQYNLDNTVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVF 184

Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGG 240
           AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGRLGG
Sbjct: 185 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCVLFINDLDAGAGRLGG 244

Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 300
           TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 245 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 304

Query: 301 MEKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRN 360
           MEKFYWAPTREDRIGVCSGIFR+DN+PKEDI+KLVDTFPGQSIDFFGALRARVYDDEVR 
Sbjct: 305 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIIKLVDTFPGQSIDFFGALRARVYDDEVRK 364

Query: 361 WVCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSE 420
           W  SVGVENI+K+LVNSKEGPPTFEQPKMTL+KLLEYGNMLVQEQENVKRVQLADKYLSE
Sbjct: 365 WAASVGVENISKRLVNSKEGPPTFEQPKMTLQKLLEYGNMLVQEQENVKRVQLADKYLSE 424

Query: 421 AALGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYVL 475
           AALGDANEDAIKSG FYGKAAQQV LP+PEGCTDPNA+N+DPTARSDDGSCNY L
Sbjct: 425 AALGDANEDAIKSGAFYGKAAQQVHLPVPEGCTDPNAENYDPTARSDDGSCNYEL 479

[Close]

BLAST of CsGy6G001220 vs. TAIR10
Match: AT2G39730.1 (rubisco activase)

HSP 1 Score: 757.3 bits (1954), Expect = 5.7e-219
Identity = 378/473 (79.92%), Postives = 412/473 (87.10%), Query Frame = 0


Query: 1   MATAGAVNRIPLSLNGAIAGP-SVQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEE 60
           ++T GA+NR PLSLNG+ +G  S  +S FLG  +   + RF  S   S  SFKV+AV E+
Sbjct: 5   VSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVS-RFAQSNKKSNGSFKVLAVKED 64

Query: 61  IDEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGL 120
               KQT  D+W+GLA+D SDDQQDITRGKGMVD++FQAP G GTH  VLSSYEY+S GL
Sbjct: 65  ----KQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGL 124

Query: 121 RQYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVF 180
           RQYN DN +DGFYIAPAFMDKLVVHI+KNF+ LPNIKVPLILGIWGGKGQGKSFQCELV 
Sbjct: 125 RQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVM 184

Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGG 240
           AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC LFINDLDAGAGR+GG
Sbjct: 185 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGG 244

Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 300
           TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGR
Sbjct: 245 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGR 304

Query: 301 MEKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRN 360
           MEKFYWAPTREDRIGVC GIFR+D I  EDIV LVD FPGQSIDFFGALRARVYDDEVR 
Sbjct: 305 MEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRK 364

Query: 361 WVCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSE 420
           +V S+GVE I K+LVNS+EGPP FEQP+MT EKL+EYGNMLV EQENVKRVQLA+ YLS+
Sbjct: 365 FVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQ 424

Query: 421 AALGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNY 473
           AALGDAN DAI  GTFYGK AQQV+LP+PEGCTDP A+NFDPTARSDDG+C Y
Sbjct: 425 AALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472

[Close]

BLAST of CsGy6G001220 vs. TAIR10
Match: AT1G73110.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 323.6 bits (828), Expect = 2.1e-88
Identity = 178/383 (46.48%), Postives = 244/383 (63.71%), Query Frame = 0


Query: 41  PSSKVSSGSSFKVVAVAEEIDEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPS 100
           P  K+S  SS++V         K    KD    L  +  +    +    GM+D +F    
Sbjct: 60  PRKKLSEQSSWEV---------KDSEGKDYLYRLGAESDNVNIAVGARSGMIDDVFIGDF 119

Query: 101 GAGTHDPVLSSYEYLSAGLRQYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLP-NIKVPL 160
                D V   ++Y     R  +F++    +YIAP+F+DK+ VHI KN++    NIK+PL
Sbjct: 120 LGKDSDIV---FDYRQKATR--SFEHLQGDYYIAPSFLDKVAVHIVKNYLAPSLNIKIPL 179

Query: 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK- 220
           ILGIWGGKGQGK+FQ EL+F  MG+ P++MSAGELES  AGEP +LIR RYR A+ +I+ 
Sbjct: 180 ILGIWGGKGQGKTFQTELIFKTMGVEPVIMSAGELESDRAGEPGRLIRDRYRTASQVIQN 239

Query: 221 KGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEEN-PR 280
           +GKM  L IND+DAG GR  G TQ TVNNQ+V  TLMN+ADNPT V +   + + +   R
Sbjct: 240 QGKMSVLMINDIDAGLGRF-GETQMTVNNQIVVGTLMNLADNPTRVSVGQEWREADMVNR 299

Query: 281 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTF 340
           VP+IVTGNDFSTLYAPLIR+GRMEKFYW PTRED + + S ++  D I ++D++ +VD F
Sbjct: 300 VPLIVTGNDFSTLYAPLIREGRMEKFYWQPTREDIVNIVSRMYEKDGISRKDVISIVDKF 359

Query: 341 PGQSIDFFGALRARVYDDEVRNWVCSV-GVENIAKKLVNSK--EGPPTFEQPKMTLEKLL 400
           P Q++DF+GALR+R YD  +  WV    G+E + K L+  K  +  P F  P+ T+E LL
Sbjct: 360 PNQALDFYGALRSRTYDRSILKWVDEAGGMETLGKVLLRRKKTQEVPQFTAPEQTVEALL 419

Query: 401 EYGNMLVQEQENVKRVQLADKYL 418
           E G  L+ EQ+ +   +L+ +Y+
Sbjct: 420 ESGYSLINEQKLIMETKLSKEYM 427

[Close]

BLAST of CsGy6G001220 vs. TAIR10
Match: AT2G03670.1 (cell division cycle 48B)

HSP 1 Score: 48.5 bits (114), Expect = 1.3e-05
Identity = 39/163 (23.93%), Postives = 71/163 (43.56%), Query Frame = 0


Query: 155 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 214
           +K P  L ++G  G GK+     V  +   + I++S   +   +AGE  K++R+ + EA+
Sbjct: 53  LKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEAS 112

Query: 215 DIIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE 274
                 K   +FI+++D    R     +  V       TLM+ ++ P++           
Sbjct: 113 SHAVSDKPSVIFIDEIDVLCPRRDARREQDVRIASQLFTLMD-SNKPSS----------S 172

Query: 275 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV 316
            PRV ++ + N    +   L R GR +       P  EDR+ +
Sbjct: 173 APRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKI 204

[Close]

BLAST of CsGy6G001220 vs. Swiss-Prot
Match: sp|Q7X9A0|RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata OX=66636 GN=RCA1 PE=1 SV=1)

HSP 1 Score: 787.3 bits (2032), Expect = 9.3e-227
Identity = 396/474 (83.54%), Postives = 429/474 (90.51%), Query Frame = 0


Query: 2   ATAGAVNRIPLSLNGAIAGPS-VQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEEI 61
           +T GAVNR PLSLNG+ A  S V S+AF GSSLKK+  +FP  K SSG +FK+  VA+EI
Sbjct: 6   STVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSG-NFKI--VAQEI 65

Query: 62  DEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGLR 121
            E +QT KDKWKGLA+D+SDDQQDITRGKGMVDTLFQAP  +GTH  V+SSY+Y+S GLR
Sbjct: 66  SEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLR 125

Query: 122 QYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFA 181
           QYN DNN+DGFYIAPAFMDKLVVHI+KNF+ LPNIK+PLILGIWGGKGQGKSFQCELVFA
Sbjct: 126 QYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFA 185

Query: 182 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGT 241
           KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGR+GGT
Sbjct: 186 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 245

Query: 242 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 301
           TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 246 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 305

Query: 302 EKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRNW 361
           EKFYWAPTREDRIGVC GIFR+DN+  +DIVKLVDTFPGQSIDFFGALRARVY DEVR W
Sbjct: 306 EKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKW 365

Query: 362 VCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA 421
           V  VGV+ I KKLVNSKEGPP+FEQPKMT++KLL YG MLVQEQENVKRVQLADKY+SEA
Sbjct: 366 VSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEA 425

Query: 422 ALGDANEDAIKSGTFY-GKAAQQV-SLPIPEGCTDPNADNFDPTARSDDGSCNY 473
           ALGDAN DAIK GTFY G+AAQQV ++P+PEGCTDP A N+DPTARSDDGSC Y
Sbjct: 426 ALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474

[Close]

BLAST of CsGy6G001220 vs. Swiss-Prot
Match: sp|P10896|RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RCA PE=1 SV=2)

HSP 1 Score: 757.3 bits (1954), Expect = 1.0e-217
Identity = 378/473 (79.92%), Postives = 412/473 (87.10%), Query Frame = 0


Query: 1   MATAGAVNRIPLSLNGAIAGP-SVQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEE 60
           ++T GA+NR PLSLNG+ +G  S  +S FLG  +   + RF  S   S  SFKV+AV E+
Sbjct: 5   VSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVS-RFAQSNKKSNGSFKVLAVKED 64

Query: 61  IDEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGL 120
               KQT  D+W+GLA+D SDDQQDITRGKGMVD++FQAP G GTH  VLSSYEY+S GL
Sbjct: 65  ----KQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGL 124

Query: 121 RQYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVF 180
           RQYN DN +DGFYIAPAFMDKLVVHI+KNF+ LPNIKVPLILGIWGGKGQGKSFQCELV 
Sbjct: 125 RQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVM 184

Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGG 240
           AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC LFINDLDAGAGR+GG
Sbjct: 185 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGG 244

Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 300
           TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGR
Sbjct: 245 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGR 304

Query: 301 MEKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRN 360
           MEKFYWAPTREDRIGVC GIFR+D I  EDIV LVD FPGQSIDFFGALRARVYDDEVR 
Sbjct: 305 MEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRK 364

Query: 361 WVCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSE 420
           +V S+GVE I K+LVNS+EGPP FEQP+MT EKL+EYGNMLV EQENVKRVQLA+ YLS+
Sbjct: 365 FVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQ 424

Query: 421 AALGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNY 473
           AALGDAN DAI  GTFYGK AQQV+LP+PEGCTDP A+NFDPTARSDDG+C Y
Sbjct: 425 AALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472

[Close]

BLAST of CsGy6G001220 vs. Swiss-Prot
Match: sp|P93431|RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RCA PE=1 SV=2)

HSP 1 Score: 755.0 bits (1948), Expect = 5.1e-217
Identity = 371/466 (79.61%), Postives = 412/466 (88.41%), Query Frame = 0


Query: 13  SLNGAIAGPSVQSSAFLGSSLKK-----ANFRFPSSKVSSGSSFKVVAVAEEIDEKKQTS 72
           + +  +  P+   + FLG  LKK      N+   SS +   + FKV  +A+E+DE KQT 
Sbjct: 4   AFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSNI---NRFKV--MAKELDEGKQTD 63

Query: 73  KDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGLRQYNFDNN 132
           +D+WKGLA+D+SDDQQDITRGKG VD+LFQAP+G GTH+ VLSSYEYLS GLR Y+FDN 
Sbjct: 64  QDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNT 123

Query: 133 VDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI 192
           + GFYIAPAFMDKLVVHISKNFM LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI
Sbjct: 124 MGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI 183

Query: 193 MMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTTQYTVNN 252
           MMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGR+GGTTQYTVNN
Sbjct: 184 MMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN 243

Query: 253 QMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 312
           QMVNATLMNIADNPTNVQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP
Sbjct: 244 QMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 303

Query: 313 TREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWVCSVGVE 372
           TR+DR+GVC GIFR+DN+P EDIVK+VD+FPGQSIDFFGALRARVYDDEVR WV   GVE
Sbjct: 304 TRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVE 363

Query: 373 NIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANE 432
           NI K+LVNS+EGPP FEQPKMT+EKL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN 
Sbjct: 364 NIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANS 423

Query: 433 DAIKSGTFYGKAAQQV-SLPIPEGCTDPNADNFDPTARSDDGSCNY 473
           DA+K+G+FYG+ AQQ  +LP+PEGCTDP A NFDPTARSDDGSC Y
Sbjct: 424 DAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLY 464

[Close]

BLAST of CsGy6G001220 vs. Swiss-Prot
Match: sp|Q40281|RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica OX=3750 GN=RCA PE=2 SV=1)

HSP 1 Score: 754.6 bits (1947), Expect = 6.6e-217
Identity = 371/437 (84.90%), Postives = 400/437 (91.53%), Query Frame = 0


Query: 1   MATAGAVNRIPLSLNGAIAGPSVQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEEI 60
           ++T G+VNR P +LNG+ +  SV SS FLGSSLKK N RF +SKVSSGS    + +   +
Sbjct: 5   VSTIGSVNRAPPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGS----LRIVASV 64

Query: 61  DEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGLR 120
           DE KQT KD+WKGLAFD SDDQQDITRGKG VD+LFQAP G+GTH  ++SSYEY+S GLR
Sbjct: 65  DEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLR 124

Query: 121 QYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFA 180
           QYNFDNN+DG+YIAPAFMDKLVVHI+KNFM LPN+KVPLILGIWGGKGQGKSFQCELVFA
Sbjct: 125 QYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFA 184

Query: 181 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGT 240
           KM I+PIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCALFINDLDAGAGRLGGT
Sbjct: 185 KMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGT 244

Query: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 300
           TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 245 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 304

Query: 301 EKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRNW 360
           EKFYWAPTREDRIGVC GIFRSDN+ KEDIVKLVDTFPGQSIDFFGALRARVYDDEVR W
Sbjct: 305 EKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 364

Query: 361 VCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA 420
           +  VGV++I KKLVNSKEGPPTFEQPKMT+EKLLEYGNMLVQEQENVKRVQLADKYLSEA
Sbjct: 365 ITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEA 424

Query: 421 ALGDANEDAIKSGTFYG 438
           ALGDAN DA+ +GTFYG
Sbjct: 425 ALGDANSDAMNTGTFYG 437

[Close]

BLAST of CsGy6G001220 vs. Swiss-Prot
Match: sp|P10871|RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=2)

HSP 1 Score: 743.4 bits (1918), Expect = 1.5e-213
Identity = 365/475 (76.84%), Postives = 411/475 (86.53%), Query Frame = 0


Query: 1   MATAGAVNRIPLSLNGAIAGPSVQSSAFLGSSLKK-ANFRFPSSKVSSGSSFKVVAVAEE 60
           ++T GA  R PL+LNG+ AG SV +S FLGSSLKK  N RFPSS  ++  + K       
Sbjct: 5   VSTVGAATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAA----- 64

Query: 61  IDEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGL 120
             E ++ + DKW  LA D SDDQ DI RGKGMVD+LFQAP+ AGTH P+ SS+EY S GL
Sbjct: 65  --ENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGL 124

Query: 121 RQYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVF 180
           R+Y+ DN +  FYIAPAFMDKLVVHI+KNF+ LPNIK+PLILG+WGGKGQGKSFQCELVF
Sbjct: 125 RKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVF 184

Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGG 240
           AK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMCALFINDL+ GAGR+GG
Sbjct: 185 AKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGG 244

Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 300
           TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNK++N RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 245 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGR 304

Query: 301 MEKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRN 360
           MEKFYWAPTREDRIGVC+GIF++D +P E +VKLVD FPGQSIDFFGALRARVY DEVR 
Sbjct: 305 MEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRK 364

Query: 361 WVCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSE 420
           WV SVGV+N+ KKLVNSK+GPP FEQP+MTL+KL+EYGNMLVQEQENVKRVQLAD+Y+S 
Sbjct: 365 WVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 424

Query: 421 AALGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYVL 475
           AALGDAN+DAI  GTF+GKAAQQVSLP+ +GCTDP A N+DPTARSDDGSC Y L
Sbjct: 425 AALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472

[Close]

BLAST of CsGy6G001220 vs. TrEMBL
Match: tr|A0A0A0KBG2|A0A0A0KBG2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008680 PE=4 SV=1)

HSP 1 Score: 950.7 bits (2456), Expect = 1.3e-273
Identity = 474/474 (100.00%), Postives = 474/474 (100.00%), Query Frame = 0


Query: 1   MATAGAVNRIPLSLNGAIAGPSVQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEEI 60
           MATAGAVNRIPLSLNGAIAGPSVQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEEI
Sbjct: 1   MATAGAVNRIPLSLNGAIAGPSVQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEEI 60

Query: 61  DEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGLR 120
           DEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGLR
Sbjct: 61  DEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGLR 120

Query: 121 QYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFA 180
           QYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFA
Sbjct: 121 QYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFA 180

Query: 181 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGT 240
           KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGT
Sbjct: 181 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGT 240

Query: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 300
           TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 300

Query: 301 EKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRNW 360
           EKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRNW
Sbjct: 301 EKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRNW 360

Query: 361 VCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA 420
           VCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA
Sbjct: 361 VCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA 420

Query: 421 ALGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYVL 475
           ALGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYVL
Sbjct: 421 ALGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYVL 474

[Close]

BLAST of CsGy6G001220 vs. TrEMBL
Match: tr|A0A1S3B3Z2|A0A1S3B3Z2_CUCME (ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485518 PE=4 SV=1)

HSP 1 Score: 921.0 bits (2379), Expect = 1.1e-264
Identity = 456/473 (96.41%), Postives = 466/473 (98.52%), Query Frame = 0


Query: 1   MATAGAVNRIPLSLNGAIAGPSVQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEEI 60
           MATAGAVNRIPLSLNGAIAGPSVQSS FLGS+LKKANFRFP+SKVSSGSSFKVVAVAEEI
Sbjct: 1   MATAGAVNRIPLSLNGAIAGPSVQSSTFLGSNLKKANFRFPNSKVSSGSSFKVVAVAEEI 60

Query: 61  DEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGLR 120
           DEKKQT+KDKWKGLAFD+SDDQQDITRGKGMVD+LFQAP+GAGTHDPVLSSYEYLSAGLR
Sbjct: 61  DEKKQTNKDKWKGLAFDISDDQQDITRGKGMVDSLFQAPTGAGTHDPVLSSYEYLSAGLR 120

Query: 121 QYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFA 180
           QYN DN+V+GFYIAPAFMDKLVVHI+KNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFA
Sbjct: 121 QYNLDNDVEGFYIAPAFMDKLVVHITKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFA 180

Query: 181 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGT 240
           KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGT
Sbjct: 181 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGT 240

Query: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 300
           TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 300

Query: 301 EKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRNW 360
           EKFYWAPTREDRIGVCSGIFRSDNIPKEDI+KLVDTFPGQSIDFFGALRARVYDDEVR W
Sbjct: 301 EKFYWAPTREDRIGVCSGIFRSDNIPKEDIIKLVDTFPGQSIDFFGALRARVYDDEVRKW 360

Query: 361 VCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA 420
             SVGVENIAKKLVNSKEGPPT EQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA
Sbjct: 361 ASSVGVENIAKKLVNSKEGPPTLEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA 420

Query: 421 ALGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYV 474
           ALGDANEDAIK GTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYV
Sbjct: 421 ALGDANEDAIKRGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYV 473

[Close]

BLAST of CsGy6G001220 vs. TrEMBL
Match: tr|E5GC77|E5GC77_CUCME (Ribulose bisphosphate carboxylase/oxygenase activase 1 OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 921.0 bits (2379), Expect = 1.1e-264
Identity = 456/473 (96.41%), Postives = 466/473 (98.52%), Query Frame = 0


Query: 1   MATAGAVNRIPLSLNGAIAGPSVQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEEI 60
           MATAGAVNRIPLSLNGAIAGPSVQSS FLGS+LKKANFRFP+SKVSSGSSFKVVAVAEEI
Sbjct: 1   MATAGAVNRIPLSLNGAIAGPSVQSSTFLGSNLKKANFRFPNSKVSSGSSFKVVAVAEEI 60

Query: 61  DEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGLR 120
           DEKKQT+KDKWKGLAFD+SDDQQDITRGKGMVD+LFQAP+GAGTHDPVLSSYEYLSAGLR
Sbjct: 61  DEKKQTNKDKWKGLAFDISDDQQDITRGKGMVDSLFQAPTGAGTHDPVLSSYEYLSAGLR 120

Query: 121 QYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFA 180
           QYN DN+V+GFYIAPAFMDKLVVHI+KNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFA
Sbjct: 121 QYNLDNDVEGFYIAPAFMDKLVVHITKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFA 180

Query: 181 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGT 240
           KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGT
Sbjct: 181 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGT 240

Query: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 300
           TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 300

Query: 301 EKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRNW 360
           EKFYWAPTREDRIGVCSGIFRSDNIPKEDI+KLVDTFPGQSIDFFGALRARVYDDEVR W
Sbjct: 301 EKFYWAPTREDRIGVCSGIFRSDNIPKEDIIKLVDTFPGQSIDFFGALRARVYDDEVRKW 360

Query: 361 VCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA 420
             SVGVENIAKKLVNSKEGPPT EQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA
Sbjct: 361 ASSVGVENIAKKLVNSKEGPPTLEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA 420

Query: 421 ALGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYV 474
           ALGDANEDAIK GTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYV
Sbjct: 421 ALGDANEDAIKRGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYV 473

[Close]

BLAST of CsGy6G001220 vs. TrEMBL
Match: tr|D7THJ7|D7THJ7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0007g00840 PE=4 SV=1)

HSP 1 Score: 830.1 bits (2143), Expect = 2.5e-237
Identity = 412/472 (87.29%), Postives = 440/472 (93.22%), Query Frame = 0


Query: 1   MATAGAVNRIPLSLNGAIAGPSVQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEEI 60
           ++T GAVNR PL+LNG+  G SV SSAFLG+SLKK + +    + SSG +FKVVA   E+
Sbjct: 5   ISTLGAVNRAPLNLNGSGTGASVPSSAFLGNSLKKVSSKIAHPRTSSG-NFKVVA---EV 64

Query: 61  DEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGLR 120
           DE+KQTSKDKWKGLAFD SDDQQDITRGKGMVD+LFQAP  +GTH  V+SSY+Y+S GLR
Sbjct: 65  DEEKQTSKDKWKGLAFDESDDQQDITRGKGMVDSLFQAPMDSGTHYAVMSSYDYISTGLR 124

Query: 121 QYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFA 180
           QYN DN +DGFYIAPAFMDKLVVHI+KNFM LPNIKVPLILGIWGGKGQGKSFQCELVFA
Sbjct: 125 QYNLDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFA 184

Query: 181 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGT 240
           KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMC LFINDLDAGAGRLGGT
Sbjct: 185 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGGT 244

Query: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 300
           TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 245 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 304

Query: 301 EKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRNW 360
           EKFYWAPTREDRIGVC+GIFRSDNIPKED+VKLVDTFPGQSIDFFGALRARVYDDEVR W
Sbjct: 305 EKFYWAPTREDRIGVCTGIFRSDNIPKEDMVKLVDTFPGQSIDFFGALRARVYDDEVRKW 364

Query: 361 VCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEA 420
           V SVGVE I KKLVNSKEGPPTFE+PKMTL+KLLEYGNMLVQEQENVKRVQLADKYLSEA
Sbjct: 365 VASVGVEGIGKKLVNSKEGPPTFEKPKMTLDKLLEYGNMLVQEQENVKRVQLADKYLSEA 424

Query: 421 ALGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNY 473
           ALGDANEDAIKSG+FYGKAAQQV+LP+PEGCTDP+A+NFDPTARSDDGSC Y
Sbjct: 425 ALGDANEDAIKSGSFYGKAAQQVNLPVPEGCTDPSANNFDPTARSDDGSCLY 472

[Close]

BLAST of CsGy6G001220 vs. TrEMBL
Match: tr|A0A2P4KCP8|A0A2P4KCP8_QUESU (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_23099 PE=4 SV=1)

HSP 1 Score: 828.6 bits (2139), Expect = 7.3e-237
Identity = 408/471 (86.62%), Postives = 436/471 (92.57%), Query Frame = 0


Query: 2   ATAGAVNRIPLSLNGAIAGPSVQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEEID 61
           +T GAVNR PLSLN   AG SV SSAFLGSSLKK   R  + K S+G SFKVVA   E++
Sbjct: 6   STIGAVNRAPLSLNSTGAGASVPSSAFLGSSLKKVTSRITNPKASNG-SFKVVA---EVE 65

Query: 62  EKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGLRQ 121
           E KQT+KDKWKGLAFD SDDQQDITRGKGMVD+LFQAPSG GTH  V+SSY+Y+S GLRQ
Sbjct: 66  EDKQTNKDKWKGLAFDESDDQQDITRGKGMVDSLFQAPSGTGTHYAVMSSYDYISTGLRQ 125

Query: 122 YNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFAK 181
           YN DNN+DGFYIAPAFMDKLVVHI+KNFM LPNIKVPLILGIWGGKGQGKSFQCELVFAK
Sbjct: 126 YNLDNNMDGFYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAK 185

Query: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTT 241
           MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMC LFINDLDAGAGRLGGTT
Sbjct: 186 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGGTT 245

Query: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
           QYTVNNQMVNATLMNIADNPTNVQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 246 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRME 305

Query: 302 KFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWV 361
           KFYWAPTREDRIGVC+GIFRSDN+P +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W+
Sbjct: 306 KFYWAPTREDRIGVCTGIFRSDNVPVDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 365

Query: 362 CSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEAA 421
            ++GV+ + K+LVNSKEGPPTFEQP+MT+EKLLEYGNMLVQEQENVKRVQLADKYLSEAA
Sbjct: 366 STIGVDGVGKRLVNSKEGPPTFEQPRMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAA 425

Query: 422 LGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNY 473
           LG+ANEDAIKSGTFYGKAAQQV+ P+PEGCTDPNA NFDPTARSDDGSC Y
Sbjct: 426 LGEANEDAIKSGTFYGKAAQQVNFPVPEGCTDPNAQNFDPTARSDDGSCLY 472

The following BLAST results are available for this feature:

BLAST of CsGy6G001220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138462.1	1.9e-273	100.00	PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [...	[more]
XP_008441387.1	1.6e-264	96.41	PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [...	[more]
XP_022955346.1	1.8e-255	91.77	ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Cucurbita m...	[more]
XP_022991087.1	1.8e-255	91.77	ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Cucurbita m...	[more]
XP_023550769.1	3.1e-255	92.21	ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like [Cucurb...	[more]

BLAST of CsGy6G001220 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G39730.1	5.7e-219	79.92	rubisco activase	[more]
AT1G73110.1	2.1e-88	46.48	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT2G03670.1	1.3e-05	23.93	cell division cycle 48B	[more]

BLAST of CsGy6G001220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q7X9A0\|RCA1_LARTR	9.3e-227	83.54	Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea ...	[more]
sp\|P10896\|RCA_ARATH	1.0e-217	79.92	Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidops...	[more]
sp\|P93431\|RCA_ORYSJ	5.1e-217	79.61	Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sat...	[more]
sp\|Q40281\|RCA_MALDO	6.6e-217	84.90	Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus dom...	[more]
sp\|P10871\|RCA_SPIOL	1.5e-213	76.84	Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia ...	[more]

BLAST of CsGy6G001220 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KBG2\|A0A0A0KBG2_CUCSA	1.3e-273	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008680 PE=4 SV=1	[more]
tr\|A0A1S3B3Z2\|A0A1S3B3Z2_CUCME	1.1e-264	96.41	ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis m...	[more]
tr\|E5GC77\|E5GC77_CUCME	1.1e-264	96.41	Ribulose bisphosphate carboxylase/oxygenase activase 1 OS=Cucumis melo subsp. me...	[more]
tr\|D7THJ7\|D7THJ7_VITVI	2.5e-237	87.29	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0007g00840 PE=4 SV=...	[more]
tr\|A0A2P4KCP8\|A0A2P4KCP8_QUESU	7.3e-237	86.62	Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Quercus...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR003959	ATPase_AAA_core

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0008150	biological_process
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046863	ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G001220.1	CsGy6G001220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 123..307 e-value: 4.1E-42 score: 145.9
None	No IPR available	GENE3D	G3DSA:1.10.8.1070		coord: 308..420 e-value: 1.6E-48 score: 165.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 447..470
None	No IPR available	PANTHER	PTHR32429:SF12	SUBFAMILY NOT NAMED	coord: 2..472
None	No IPR available	PANTHER	PTHR32429	FAMILY NOT NAMED	coord: 2..472
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 163..304 e-value: 5.8E-14 score: 52.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 131..337

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G001220	Cla006542	Watermelon (97103) v1	cgybwmB497
CsGy6G001220	Csa6G008680	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G001220	MELO3C008231	Melon (DHL92) v3.5.1	cgybmeB407
CsGy6G001220	ClCG11G006730	Watermelon (Charleston Gray)	cgybwcgB397
CsGy6G001220	ClCG07G003520	Watermelon (Charleston Gray)	cgybwcgB449
CsGy6G001220	CSPI06G01180	Wild cucumber (PI 183967)	cgybcpiB288
CsGy6G001220	CSPI05G09820	Wild cucumber (PI 183967)	cgybcpiB283
CsGy6G001220	CmaCh15G001020	Cucurbita maxima (Rimu)	cgybcmaB741
CsGy6G001220	CmaCh04G011710	Cucurbita maxima (Rimu)	cgybcmaB840
CsGy6G001220	CmaCh04G002030	Cucurbita maxima (Rimu)	cgybcmaB842
CsGy6G001220	CmaCh04G029440	Cucurbita maxima (Rimu)	cgybcmaB836
CsGy6G001220	CmoCh04G012410	Cucurbita moschata (Rifu)	cgybcmoB820
CsGy6G001220	CmoCh04G030680	Cucurbita moschata (Rifu)	cgybcmoB816
CsGy6G001220	CmoCh15G001100	Cucurbita moschata (Rifu)	cgybcmoB722
CsGy6G001220	CmoCh04G002040	Cucurbita moschata (Rifu)	cgybcmoB823
CsGy6G001220	Lsi04G008990	Bottle gourd (USVL1VR-Ls)	cgyblsiB418
CsGy6G001220	Lsi03G003620	Bottle gourd (USVL1VR-Ls)	cgyblsiB409
CsGy6G001220	Cp4.1LG01g04990	Cucurbita pepo (Zucchini)	cgybcpeB806
CsGy6G001220	Cp4.1LG01g10940	Cucurbita pepo (Zucchini)	cgybcpeB803
CsGy6G001220	Cp4.1LG01g25450	Cucurbita pepo (Zucchini)	cgybcpeB798
CsGy6G001220	Cp4.1LG13g11000	Cucurbita pepo (Zucchini)	cgybcpeB741
CsGy6G001220	MELO3C008231.2	Melon (DHL92) v3.6.1	cgybmedB406
CsGy6G001220	CsaV3_6G001300	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G001220	CsaV3_5G008270	Cucumber (Chinese Long) v3	cgybcucB291
CsGy6G001220	Cla97C11G213700	Watermelon (97103) v2	cgybwmbB403
CsGy6G001220	Cla97C07G131810	Watermelon (97103) v2	cgybwmbB457
CsGy6G001220	Bhi04G001948	Wax gourd	cgybwgoB558
CsGy6G001220	Carg02090	Silver-seed gourd	carcgybB0284
CsGy6G001220	Carg06018	Silver-seed gourd	carcgybB0023

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsGy6G001220	CsGy5G007180	Cucumber (Gy14) v2	cgybcgybB143

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G001220	Cucumber (Gy14) v2	cgybcgybB108
CsGy6G001220	Cucumber (Gy14) v2	cgybcgybB130
CsGy6G001220	Cucurbita maxima (Rimu)	cgybcmaB737
CsGy6G001220	Cucurbita maxima (Rimu)	cgybcmaB832
CsGy6G001220	Cucurbita maxima (Rimu)	cgybcmaB859
CsGy6G001220	Cucurbita maxima (Rimu)	cgybcmaB860
CsGy6G001220	Cucurbita moschata (Rifu)	cgybcmoB718
CsGy6G001220	Cucurbita moschata (Rifu)	cgybcmoB812
CsGy6G001220	Cucurbita moschata (Rifu)	cgybcmoB841
CsGy6G001220	Cucurbita moschata (Rifu)	cgybcmoB842
CsGy6G001220	Cucurbita pepo (Zucchini)	cgybcpeB812
CsGy6G001220	Cucurbita pepo (Zucchini)	cgybcpeB835
CsGy6G001220	Cucumber (Chinese Long) v2	cgybcuB264
CsGy6G001220	Bottle gourd (USVL1VR-Ls)	cgyblsiB408
CsGy6G001220	Melon (DHL92) v3.5.1	cgybmeB422
CsGy6G001220	Melon (DHL92) v3.6.1	cgybmedB418
CsGy6G001220	Watermelon (Charleston Gray)	cgybwcgB391
CsGy6G001220	Watermelon (Charleston Gray)	cgybwcgB429
CsGy6G001220	Watermelon (97103) v1	cgybwmB421
CsGy6G001220	Watermelon (97103) v1	cgybwmB476
CsGy6G001220	Wild cucumber (PI 183967)	cgybcpiB271
CsGy6G001220	Silver-seed gourd	carcgybB0175
CsGy6G001220	Silver-seed gourd	carcgybB0586
CsGy6G001220	Cucumber (Chinese Long) v3	cgybcucB275
CsGy6G001220	Watermelon (97103) v2	cgybwmbB397