CsGy5G029040 (gene) Cucumber (Gy14) v2

Overview
NameCsGy5G029040
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUbiquitin-protein ligase, putative
LocationChr5 : 32496583 .. 32496906 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGACAATTTTTTTGGCTTGTTCACCAGTACCAGTTTGTTCACTGGTGACGGTAAGAGCACTTTGTCCAATGCTAATACTTTCACTTTCATTCGCTTCAATTGTTAGACTCTCCACAATCAAGAGAATACCTTCGGCTGACTCCATGGCATCCACAGAGAAGGCACGCCTTGCTGTTTCTAGAAGTAATCCGAGAGCTCCTAGCCTCAATAAAGCACGCCTGTTCTCTCTTATTTTGCAACAATGCATAAGAAGATTAAGAACTGCAACCAACTGCTCTTGGTTTGACTTGAAATTATCCCATATGCGCTGGTTCAAATAA

mRNA sequence

ATGAGGACAATTTTTTTGGCTTGTTCACCAGTACCAGTTTGTTCACTGGTGACGGTAAGAGCACTTTGTCCAATGCTAATACTTTCACTTTCATTCGCTTCAATTGTTAGACTCTCCACAATCAAGAGAATACCTTCGGCTGACTCCATGGCATCCACAGAGAAGGCACGCCTTGCTGTTTCTAGAAGTAATCCGAGAGCTCCTAGCCTCAATAAAGCACGCCTGTTCTCTCTTATTTTGCAACAATGCATAAGAAGATTAAGAACTGCAACCAACTGCTCTTGGTTTGACTTGAAATTATCCCATATGCGCTGGTTCAAATAA

Coding sequence (CDS)

ATGAGGACAATTTTTTTGGCTTGTTCACCAGTACCAGTTTGTTCACTGGTGACGGTAAGAGCACTTTGTCCAATGCTAATACTTTCACTTTCATTCGCTTCAATTGTTAGACTCTCCACAATCAAGAGAATACCTTCGGCTGACTCCATGGCATCCACAGAGAAGGCACGCCTTGCTGTTTCTAGAAGTAATCCGAGAGCTCCTAGCCTCAATAAAGCACGCCTGTTCTCTCTTATTTTGCAACAATGCATAAGAAGATTAAGAACTGCAACCAACTGCTCTTGGTTTGACTTGAAATTATCCCATATGCGCTGGTTCAAATAA

Protein sequence

MRTIFLACSPVPVCSLVTVRALCPMLILSLSFASIVRLSTIKRIPSADSMASTEKARLAVSRSNPRAPSLNKARLFSLILQQCIRRLRTATNCSWFDLKLSHMRWFK
Homology
[Close]
BLAST of CsGy5G029040 vs. TrEMBL
Match: tr|A0A2P2KZW9|A0A2P2KZW9_RHIMU (Ubiquitin-protein ligase OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.6e-25
Identity = 66/81 (81.48%), Postives = 71/81 (87.65%), Query Frame = 0 

Query: 25  MLILSLSFASIVRLSTIKRIPSADSMASTEKARLAVSRSNPRAPSLNKARLFSLILQQCI 84
           MLILSLS AS VRLSTI+R+PSA SMAS EKARLAVSR  P+AP+LNKARLFSLILQQC+
Sbjct: 1   MLILSLSLASSVRLSTIRRMPSAGSMASIEKARLAVSRRRPKAPNLNKARLFSLILQQCM 60

Query: 85  RRLRTATNCSWFDLKLSHMRW 106
           RRL TATNCSWFDLK S  RW
Sbjct: 61  RRLSTATNCSWFDLKSSRNRW 81

[Close]
BLAST of CsGy5G029040 vs. TrEMBL
Match: tr|A0A0A9IXH9|A0A0A9IXH9_ARUDO (Ubiquitin-protein ligase, putative OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.1e-18
Identity = 64/94 (68.09%), Postives = 70/94 (74.47%), Query Frame = 0 

Query: 1  MRTIFLACSPVPVCSLVTVRALCPMLILSLSFASIVRLSTIKRIPSADSMASTEKARLAV 60
          MRTIFLA SP P+ S + V+ L  ML +SLS ASIVRLSTI RIPSA S+ASTE ARLAV
Sbjct: 1  MRTIFLASSPAPLSSSLDVKTLWAML-MSLSLASIVRLSTINRIPSAGSIASTENARLAV 60

Query: 61 SRSNPRAPSLNKARLFSLILQQCIRRLRTATNCS 95
          S S P+AP  NKA LFS ILQQ  RRLRT  N S
Sbjct: 61 SSSKPKAPRHNKAHLFSRILQQYFRRLRTEANSS 93

The following BLAST results are available for this feature:
BLAST of CsGy5G029040 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsGy5G029040 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy5G029040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy5G029040 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P2KZW9|A0A2P2KZW9_RHIMU7.6e-2581.48Ubiquitin-protein ligase OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
tr|A0A0A9IXH9|A0A0A9IXH9_ARUDO3.1e-1868.09Ubiquitin-protein ligase, putative OS=Arundo donax OX=35708 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G029040.1CsGy5G029040.1mRNA