CsGy5G029030 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G029030
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr5 : 32488702 .. 32489082 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGCCTCTTTTTTCCAGATCTGGCAAGTAAGGAGTTGGAACCAAGTGCACGTGCCTCCATGTCAAGAACAGCATCCAATTTTTCTTTCCAACCAAATTCATCTTTTCCTCGACCATACACTTCAAGAGAGTCTATCCTAGGAAGTGCAGTACCATTGAATGCTGGCCCAACAGTTACAGAGAATTCTTCATCAGCAAGAAGAGACTCAGCTACAGTAAATGGTATATCATACCATGATCGCATGCCCTCGTCTAATTTTATGACTCTCTGGAAAATAGTTATCTCTGAAGGTATATGGTTCGCAGATGTATTACCAACATGGATGCGGAATCCAACCATAACAATATCAGGGTTGGAATTAGAGACAGTGATCTGA

mRNA sequence

ATGGATCGCCTCTTTTTTCCAGATCTGGCAAGTAAGGAGTTGGAACCAAGTGCACGTGCCTCCATGTCAAGAACAGCATCCAATTTTTCTTTCCAACCAAATTCATCTTTTCCTCGACCATACACTTCAAGAGAGTCTATCCTAGGAAGTGCAGTACCATTGAATGCTGGCCCAACAGTTACAGAGAATTCTTCATCAGCAAGAAGAGACTCAGCTACAGTAAATGGTATATCATACCATGATCGCATGCCCTCGTCTAATTTTATGACTCTCTGGAAAATAGTTATCTCTGAAGGTATATGGTTCGCAGATGTATTACCAACATGGATGCGGAATCCAACCATAACAATATCAGGGTTGGAATTAGAGACAGTGATCTGA

Coding sequence (CDS)

ATGGATCGCCTCTTTTTTCCAGATCTGGCAAGTAAGGAGTTGGAACCAAGTGCACGTGCCTCCATGTCAAGAACAGCATCCAATTTTTCTTTCCAACCAAATTCATCTTTTCCTCGACCATACACTTCAAGAGAGTCTATCCTAGGAAGTGCAGTACCATTGAATGCTGGCCCAACAGTTACAGAGAATTCTTCATCAGCAAGAAGAGACTCAGCTACAGTAAATGGTATATCATACCATGATCGCATGCCCTCGTCTAATTTTATGACTCTCTGGAAAATAGTTATCTCTGAAGGTATATGGTTCGCAGATGTATTACCAACATGGATGCGGAATCCAACCATAACAATATCAGGGTTGGAATTAGAGACAGTGATCTGA

Protein sequence

MDRLFFPDLASKELEPSARASMSRTASNFSFQPNSSFPRPYTSRESILGSAVPLNAGPTVTENSSSARRDSATVNGISYHDRMPSSNFMTLWKIVISEGIWFADVLPTWMRNPTITISGLELETVI

Homology

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BLAST of CsGy5G029030 vs. TrEMBL
Match: tr|A0A0A9UZ12|A0A0A9UZ12_ARUDO (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.2e-06
Identity = 33/47 (70.21%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 45 ESILGSAVPLNAGPTVTENSSSARRDSATVNGISYHDRMPSSNFMTL 92
          ESILG   P N  PTV  NSSSAR DSA VNGISYHD MPSS+  TL
Sbjct: 2  ESILGMDEPSNVLPTVIVNSSSARSDSAVVNGISYHDLMPSSSLTTL 48

The following BLAST results are available for this feature:

BLAST of CsGy5G029030 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsGy5G029030 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G029030 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G029030 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A9UZ12\|A0A0A9UZ12_ARUDO	3.2e-06	70.21	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G029030.1	CsGy5G029030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..41

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G029030	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G029030	Watermelon (97103) v2	cgybwmbB341
CsGy5G029030	Wax gourd	cgybwgoB442
CsGy5G029030	Wax gourd	cgybwgoB447
CsGy5G029030	Cucurbita maxima (Rimu)	cgybcmaB609
CsGy5G029030	Cucurbita maxima (Rimu)	cgybcmaB647
CsGy5G029030	Cucurbita moschata (Rifu)	cgybcmoB584
CsGy5G029030	Cucurbita moschata (Rifu)	cgybcmoB625
CsGy5G029030	Cucurbita pepo (Zucchini)	cgybcpeB598
CsGy5G029030	Cucurbita pepo (Zucchini)	cgybcpeB625
CsGy5G029030	Cucumber (Chinese Long) v2	cgybcuB223
CsGy5G029030	Bottle gourd (USVL1VR-Ls)	cgyblsiB325
CsGy5G029030	Melon (DHL92) v3.5.1	cgybmeB299
CsGy5G029030	Melon (DHL92) v3.5.1	cgybmeB322
CsGy5G029030	Melon (DHL92) v3.6.1	cgybmedB297
CsGy5G029030	Melon (DHL92) v3.6.1	cgybmedB299
CsGy5G029030	Melon (DHL92) v3.6.1	cgybmedB327
CsGy5G029030	Watermelon (Charleston Gray)	cgybwcgB328
CsGy5G029030	Watermelon (97103) v1	cgybwmB409
CsGy5G029030	Wild cucumber (PI 183967)	cgybcpiB225
CsGy5G029030	Silver-seed gourd	carcgybB0021
CsGy5G029030	Silver-seed gourd	carcgybB0280