CsGy5G025230 (gene) Cucumber (Gy14) v2

Overview
NameCsGy5G025230
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionRibulose 1,5-bisphosphate carboxylase
LocationChr5 : 29595683 .. 29597510 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCATGTTATCGGCGCCATTTTGCAAATTCTTAGGACGGTTTATGGTACTGAACCGGTTTGTTTCCATTTTTGCAATTACCATTTTCTTCCATCGGGTTTCTTTTTAAACTTGATTGAGAAATAGATGTATCAAAATAAATTAAAATATTTATAAGTTACATTCAAATTTGTGAATTCTATCTGTCATTATAGTCTGTTAGATGACATTTGATAGAATATCAACTATTAAATGTTTGTTTTGGATTGAAATTTTAAGTTTTGTTATAGCTAGTAAGTATTTCGTTAAATTTGCTATTTTTACAATTTTTCATTTTTAAATCTAGTATAATATTTTTTATTATAATTTTCTAAAAAAATTATAGATAATATTAATCTCGTTTTGTTATTCCTTTTTCTTTTATTATTAAGGTTAAAAAATGTTCATGTGATAATATTTACTATTTTTATGTGTTTTGGTTCTCGCGTTAGTTAACCCAATCCATCAAGGTAATGTACAAATTTGATATAAAAATATATCATATACTTCCATTGTGGGTAATGTATTTGGATTCAAGGCTCTACGTGCTCTACGTCTGGAGGATTTGCGAATCCCTACTGCTTATATTAAAACTTTCCAAGGCCCGCCTCATGGTATCCAGGTTGAAAGAGATAAATTGAAAAGTATGATCACTTGACAGATCTCCTCTATTGAAAAATCCTGATAATACAAATCTCAGTTCAATGAATCTAACAAACATTAAATGATATAAAAAAGAAAGTTGTGTGTAAGACATTGGGAACTCTCTGAATCACAATCAAATATAGTTATTGATATGCAATATTAATGTATAGTATTTTATTATGTTGTAGATATTGTTAGTAGTTTTTGCATTTAAAAATTATTACTTTTTTATAGGTATTTTTTATATAAAAATTGACTAATTATTTACATTCCACAAAACCATTAAAAGACAAAATTCATTAAAGTGTAAATATTTTGCTAAATGTTCTCTTTTTTACAATTTTATTTCTTATTTTCAATTTAATTTATATTATTTAATGGATAATCAAAACCTTAACTATAAGATGTATACATTAATTGCACTCACTTTTGTCAAATGTTTGGTTAGGTCTTTAGACTTTGTAATAAATTCAATGGGTGGCTTTACATTTTTAATTTTCATTTTAGTATGATTACAAGCTTTAGGAAATACAAATATATGGATGAAATCTTCTCGATCATATATGTTTTTTGTACGAACCATTAAATTATTCCAACTTTTTTTTATATATGAACAACTATTCCTTGTTCTAGGTTGTAGTGATTTATATTTTGAATGCGTATTGTTTTAGTATGAATCAGTATAGTATATGTTTTAGAGGATGCGCTATTTAAGGATGAATACAAATGAACAAGTGCCTAAAAGTAGTAAATACGACATGCGATGAAAGGTTTACTTTAGCTAGAGACAAGTACTAGCAACTAAATATCCGAGAATACTGTTGTTTCTATTTGTTTGTTAAAGTAGACAATGTACAAACAAATCAAAATATGGAGTAAAACCCTCAATAAAGAAAACCAAATGCTCTAAGAGTTTAGTGGATGAAATAGTTGTACTTTTGTGTGTGTTAGTGTATTTTACTTGTCAGTGCATTGGGTTGCCTCTCTCGTTAGCTCCTTCTCTCTTTTAGTTGGAGCAATAAGCTCTCTCAATCATTCTTCTCCATGCTCTCTCTTCTATCCGGCCTAGCTTACTATTAATCATATCCCTTTCTTTAGTTGCATCTTTTGTTCTCAGATATCCTTTGTTACGGTGATTGCATATCTAAATTGTAAGACCTAG

mRNA sequence

ATGGGTCATGTTATCGGCGCCATTTTGCAAATTCTTAGGACGGTTTATGGTACTGAACCGTTAACCCAATCCATCAAGGTAATGTACAAATTTGATATAAAAATATATCATATACTTCCATTGTGGGTAATGTATTTGGATTCAAGGCTCTACGTGCTCTACGTCTGGAGGATTTGCGAATCCCTACTGCTTATATTAAAACTTTCCAAGGCCCGCCTCATGGTATCCAGTATGATTACAAGCTTTAGGAAATACAAATATATGGATGAAATCTTCTCGATCATATATATATCCTTTGTTACGGTGATTGCATATCTAAATTGTAAGACCTAG

Coding sequence (CDS)

ATGGGTCATGTTATCGGCGCCATTTTGCAAATTCTTAGGACGGTTTATGGTACTGAACCGTTAACCCAATCCATCAAGGTAATGTACAAATTTGATATAAAAATATATCATATACTTCCATTGTGGGTAATGTATTTGGATTCAAGGCTCTACGTGCTCTACGTCTGGAGGATTTGCGAATCCCTACTGCTTATATTAAAACTTTCCAAGGCCCGCCTCATGGTATCCAGTATGATTACAAGCTTTAGGAAATACAAATATATGGATGAAATCTTCTCGATCATATATATATCCTTTGTTACGGTGATTGCATATCTAAATTGTAAGACCTAG

Protein sequence

MGHVIGAILQILRTVYGTEPLTQSIKVMYKFDIKIYHILPLWVMYLDSRLYVLYVWRICESLLLILKLSKARLMVSSMITSFRKYKYMDEIFSIIYISFVTVIAYLNCKT
Homology
[Close]
BLAST of CsGy5G025230 vs. NCBI nr
Match: AAA62115.1 (ribulose 1,5-bisphosphate carboxylase, partial (chloroplast) [Caiophora lateritia])

HSP 1 Score: 61.2 bits (147), Expect = 2.5e-06
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 0 

Query: 38  ILPLWVMYLDSRLYVLYVWRICESLLLILKLSKARLMVSSM 79
           +LPLWVMYL S+  VLYVW+ICESLLLILKLSKARLM S +
Sbjct: 112 LLPLWVMYLGSKPCVLYVWKICESLLLILKLSKARLMASKL 152

[Close]
BLAST of CsGy5G025230 vs. TrEMBL
Match: tr|Q32019|Q32019_9ASTE (Ribulose 1,5-bisphosphate carboxylase (Fragment) OS=Caiophora lateritia OX=37824 GN=rbcL PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 0 

Query: 38  ILPLWVMYLDSRLYVLYVWRICESLLLILKLSKARLMVSSM 79
           +LPLWVMYL S+  VLYVW+ICESLLLILKLSKARLM S +
Sbjct: 112 LLPLWVMYLGSKPCVLYVWKICESLLLILKLSKARLMASKL 152

The following BLAST results are available for this feature:
BLAST of CsGy5G025230 vs. NCBI nr
Match NameE-valueIdentityDescription
AAA62115.12.5e-0678.05ribulose 1,5-bisphosphate carboxylase, partial (chloroplast) [Caiophora lateriti... [more]
BLAST of CsGy5G025230 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy5G025230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy5G025230 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|Q32019|Q32019_9ASTE1.6e-0678.05Ribulose 1,5-bisphosphate carboxylase (Fragment) OS=Caiophora lateritia OX=37824... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015977 carbon fixation
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G025230.1CsGy5G025230.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy5G025230Cucurbita pepo (Zucchini)cgybcpeB616
CsGy5G025230Cucumber (Gy14) v2cgybcgybB142
CsGy5G025230Cucurbita maxima (Rimu)cgybcmaB606
CsGy5G025230Cucurbita maxima (Rimu)cgybcmaB626
CsGy5G025230Cucurbita maxima (Rimu)cgybcmaB657
CsGy5G025230Cucurbita maxima (Rimu)cgybcmaB672
CsGy5G025230Cucurbita moschata (Rifu)cgybcmoB580
CsGy5G025230Cucurbita moschata (Rifu)cgybcmoB603
CsGy5G025230Cucurbita moschata (Rifu)cgybcmoB637
CsGy5G025230Cucurbita moschata (Rifu)cgybcmoB650
CsGy5G025230Cucurbita pepo (Zucchini)cgybcpeB581
CsGy5G025230Cucurbita pepo (Zucchini)cgybcpeB648
CsGy5G025230Cucumber (Chinese Long) v2cgybcuB223
CsGy5G025230Cucumber (Chinese Long) v2cgybcuB234
CsGy5G025230Bottle gourd (USVL1VR-Ls)cgyblsiB300
CsGy5G025230Bottle gourd (USVL1VR-Ls)cgyblsiB337
CsGy5G025230Melon (DHL92) v3.5.1cgybmeB309
CsGy5G025230Melon (DHL92) v3.5.1cgybmeB319
CsGy5G025230Melon (DHL92) v3.6.1cgybmedB309
CsGy5G025230Melon (DHL92) v3.6.1cgybmedB318
CsGy5G025230Watermelon (Charleston Gray)cgybwcgB337
CsGy5G025230Watermelon (Charleston Gray)cgybwcgB359
CsGy5G025230Watermelon (97103) v1cgybwmB377
CsGy5G025230Watermelon (97103) v1cgybwmB387
CsGy5G025230Wild cucumber (PI 183967)cgybcpiB225
CsGy5G025230Wild cucumber (PI 183967)cgybcpiB240
CsGy5G025230Silver-seed gourdcarcgybB0831
CsGy5G025230Silver-seed gourdcarcgybB1035
CsGy5G025230Cucumber (Chinese Long) v3cgybcucB232
CsGy5G025230Cucumber (Chinese Long) v3cgybcucB239
CsGy5G025230Watermelon (97103) v2cgybwmbB324
CsGy5G025230Watermelon (97103) v2cgybwmbB365
CsGy5G025230Wax gourdcgybwgoB424
CsGy5G025230Wax gourdcgybwgoB477
CsGy5G025230Wax gourdcgybwgoB486