CsGy5G017720 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTTCCTGTTTTTGATTTTGAGACATTGCTCCATCAACAATCTACTTGAAGAATTCGAGTACGATTCCACACATCCTATCAATTTGGGGATTGGATTCAAGGAGGATGAAATCCCTAATTTTATTGGATCCTTCTATTCCAAGACGAAAGCTATGGTGAGCTACTGATTTTCATTGCTTCATTGTTGTTTTGTTGTTTCCCCCCTTTTGTTTAATTTTTATTTTCAAATACTTGAAGTTGTATGTTTTTAGTTGCATTGTGGAAATTTGAGTTTAGATCTGTAAGACCAGAGTGAATGGTTTTGTTTAGCAATTGAAATCAGTCATTGTTTTGATTGATATTTGGGATTATTGTAAAAAGAATCACAATTATTTGCTCGGCGTGGAGTAATTTCCCATGGTCGATACATGTAGAGGAATACGAGCAATTCCCATTTCATGATCAATGGGAGCTTCTCGTTTTTATCTCAGATTGATAAACTACCCTTCAAACTTTAATCAATCAATAAAGCAAATGTGATCCCGTGCCGCCTCATCTTTCTTTTATTTATAGTTTTATCTTCTCAATGATTATACAATTTTCCCTATTCAGCTCGTTTAAAATCAACCACTTTTGCTGATTTTTCTATTAGGAAAATAGACGCAAAGAAGTTTCATGGGGTTCTATAACTTTGATTAATATTTTTGAATTCCTTGGCTTTTGGGTGTAGATTTTGATTTTTCTATTTATTTTTTCCAATCCTCAAACAAGTAAGACGAATTTGAGCTTCGAAAATGGTTGCTGCCCGCTTTGGACAGTGGAATTTTCTTTTAAACCATCCTGGGAGAAAGATTGCATATGGTAACCACGAAAGAGAGATTGAAAAAGAGACGAACACAATTTAAAAAGTAGGTAGATCGAATAAGAAGGGGCCGCCGACGTTTTTTGGGATTATAGTCGATGGTGGCGGTGCACGGTGGCTCGACAGTGACGATGTACAGTCTGCCAAATGGAGACATCACTTGGTTGTTATTCATATTTGTGAAGATTTAGGTATTGGTTTGTTTTGACAATGCTACATTGCATGCAGAGCAATTGCTTGACTTAATTTCTGAATGAGTGATAATTCTTGGGTGGTCTGATTTTTTCATTTCAATTGTCCTCTTTAGAAGATGGTCTAAAGTTCAGCGAAAGTTTTCCTGTAATGAAAACATGAGTTGCCAGTACAGCCTCTGACCGAGGTGTAAGTTGTTTGTTGTTTATTTGTGTGCTGGAAACACAGTATAACTATGTTGGTGTTTTTTTTATTAGTTGAGTAATTGAATATGTATGTTTCAGAACGAAATTAGGGGTTCAAATTCAGGGGAAACCTTTGCCCAGAAATTGATTAAGAGACTAGCTAAGCGGAGAGGAATGGTTATGATGTTAGAATTTGATCCGATTGGTCCACTCGGGTAG ATGGCTTTCCTGTTTTTGATTTTGAGACATTGCTCCATCAACAATCTACTTGAAGAATTCGAGTACGATTCCACACATCCTATCAATTTGGGGATTGGATTCAAGGAGGATGAAATCCCTAATTTTATTGGATCCTTCTATTCCAAGACGAAAGCTATGAACGAAATTAGGGGTTCAAATTCAGGGGAAACCTTTGCCCAGAAATTGATTAAGAGACTAGCTAAGCGGAGAGGAATGGTTATGATGTTAGAATTTGATCCGATTGGTCCACTCGGGTAG ATGGCTTTCCTGTTTTTGATTTTGAGACATTGCTCCATCAACAATCTACTTGAAGAATTCGAGTACGATTCCACACATCCTATCAATTTGGGGATTGGATTCAAGGAGGATGAAATCCCTAATTTTATTGGATCCTTCTATTCCAAGACGAAAGCTATGAACGAAATTAGGGGTTCAAATTCAGGGGAAACCTTTGCCCAGAAATTGATTAAGAGACTAGCTAAGCGGAGAGGAATGGTTATGATGTTAGAATTTGATCCGATTGGTCCACTCGGGTAG MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNEIRGSNSGETFAQKLIKRLAKRRGMVMMLEFDPIGPLG
BLAST of CsGy5G017720 vs. NCBI nr
Match: KGN51344.1 (hypothetical protein Csa_5G522900 [Cucumis sativus]) HSP 1 Score: 113.6 bits (283), Expect = 3.5e-22 Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0
BLAST of CsGy5G017720 vs. NCBI nr
Match: XP_011657789.1 (PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g51810 isoform X1 [Cucumis sativus] >KGN48425.1 hypothetical protein Csa_6G486970 [Cucumis sativus]) HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10 Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0
BLAST of CsGy5G017720 vs. NCBI nr
Match: XP_004143938.1 (PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Cucumis sativus] >KGN50154.1 hypothetical protein Csa_5G156140 [Cucumis sativus]) HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09 Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 0
BLAST of CsGy5G017720 vs. NCBI nr
Match: XP_008437195.1 (PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Cucumis melo]) HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09 Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 0
BLAST of CsGy5G017720 vs. NCBI nr
Match: XP_022958450.1 (bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase-like [Cucurbita moschata] >XP_022958451.1 bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase-like [Cucurbita moschata] >XP_022995884.1 bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase-like [Cucurbita maxima] >XP_022995885.1 bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase-like [Cucurbita maxima] >XP_022995886.1 bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase-like [Cucurbita maxima] >XP_023534026.1 bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 71.2 bits (173), Expect = 2.0e-09 Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0
BLAST of CsGy5G017720 vs. TAIR10
Match: AT1G63000.1 (nucleotide-rhamnose synthase/epimerase-reductase) HSP 1 Score: 61.6 bits (148), Expect = 2.9e-10 Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0
BLAST of CsGy5G017720 vs. TAIR10
Match: AT1G53500.1 (NAD-dependent epimerase/dehydratase family protein) HSP 1 Score: 60.8 bits (146), Expect = 4.9e-10 Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0
BLAST of CsGy5G017720 vs. TAIR10
Match: AT1G78570.1 (rhamnose biosynthesis 1) HSP 1 Score: 58.5 bits (140), Expect = 2.4e-09 Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0
BLAST of CsGy5G017720 vs. TAIR10
Match: AT3G14790.1 (rhamnose biosynthesis 3) HSP 1 Score: 58.5 bits (140), Expect = 2.4e-09 Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0
BLAST of CsGy5G017720 vs. Swiss-Prot
Match: sp|Q9LQ04|RMLCD_ARATH (Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase OS=Arabidopsis thaliana OX=3702 GN=NRS/ER PE=1 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 5.2e-09 Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0
BLAST of CsGy5G017720 vs. Swiss-Prot
Match: sp|Q9LPG6|RHM2_ARATH (Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 OS=Arabidopsis thaliana OX=3702 GN=RHM2 PE=1 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 8.9e-09 Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0
BLAST of CsGy5G017720 vs. Swiss-Prot
Match: sp|Q9SYM5|RHM1_ARATH (Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 OS=Arabidopsis thaliana OX=3702 GN=RHM1 PE=1 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 4.4e-08 Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0
BLAST of CsGy5G017720 vs. Swiss-Prot
Match: sp|Q9LH76|RHM3_ARATH (Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3 OS=Arabidopsis thaliana OX=3702 GN=RHM3 PE=2 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 4.4e-08 Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0
BLAST of CsGy5G017720 vs. TrEMBL
Match: tr|A0A0A0KR13|A0A0A0KR13_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G522900 PE=4 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 2.3e-22 Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0
BLAST of CsGy5G017720 vs. TrEMBL
Match: tr|A0A0A0KFD5|A0A0A0KFD5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486970 PE=4 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 7.0e-11 Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0
BLAST of CsGy5G017720 vs. TrEMBL
Match: tr|A0A1S3AU07|A0A1S3AU07_CUCME (bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase OS=Cucumis melo OX=3656 GN=LOC103482697 PE=4 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 7.8e-10 Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 0
BLAST of CsGy5G017720 vs. TrEMBL
Match: tr|A0A0A0KMP5|A0A0A0KMP5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G156140 PE=4 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 7.8e-10 Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 0
BLAST of CsGy5G017720 vs. TrEMBL
Match: tr|A0A1S3B0F0|A0A1S3B0F0_CUCME (LRR receptor-like serine/threonine-protein kinase GSO1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484690 PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 3.9e-09 Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |