CsGy5G017720 (gene) Cucumber (Gy14) v2

NameCsGy5G017720
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionbifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase
LocationChr5 : 23951378 .. 23952818 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTCCTGTTTTTGATTTTGAGACATTGCTCCATCAACAATCTACTTGAAGAATTCGAGTACGATTCCACACATCCTATCAATTTGGGGATTGGATTCAAGGAGGATGAAATCCCTAATTTTATTGGATCCTTCTATTCCAAGACGAAAGCTATGGTGAGCTACTGATTTTCATTGCTTCATTGTTGTTTTGTTGTTTCCCCCCTTTTGTTTAATTTTTATTTTCAAATACTTGAAGTTGTATGTTTTTAGTTGCATTGTGGAAATTTGAGTTTAGATCTGTAAGACCAGAGTGAATGGTTTTGTTTAGCAATTGAAATCAGTCATTGTTTTGATTGATATTTGGGATTATTGTAAAAAGAATCACAATTATTTGCTCGGCGTGGAGTAATTTCCCATGGTCGATACATGTAGAGGAATACGAGCAATTCCCATTTCATGATCAATGGGAGCTTCTCGTTTTTATCTCAGATTGATAAACTACCCTTCAAACTTTAATCAATCAATAAAGCAAATGTGATCCCGTGCCGCCTCATCTTTCTTTTATTTATAGTTTTATCTTCTCAATGATTATACAATTTTCCCTATTCAGCTCGTTTAAAATCAACCACTTTTGCTGATTTTTCTATTAGGAAAATAGACGCAAAGAAGTTTCATGGGGTTCTATAACTTTGATTAATATTTTTGAATTCCTTGGCTTTTGGGTGTAGATTTTGATTTTTCTATTTATTTTTTCCAATCCTCAAACAAGTAAGACGAATTTGAGCTTCGAAAATGGTTGCTGCCCGCTTTGGACAGTGGAATTTTCTTTTAAACCATCCTGGGAGAAAGATTGCATATGGTAACCACGAAAGAGAGATTGAAAAAGAGACGAACACAATTTAAAAAGTAGGTAGATCGAATAAGAAGGGGCCGCCGACGTTTTTTGGGATTATAGTCGATGGTGGCGGTGCACGGTGGCTCGACAGTGACGATGTACAGTCTGCCAAATGGAGACATCACTTGGTTGTTATTCATATTTGTGAAGATTTAGGTATTGGTTTGTTTTGACAATGCTACATTGCATGCAGAGCAATTGCTTGACTTAATTTCTGAATGAGTGATAATTCTTGGGTGGTCTGATTTTTTCATTTCAATTGTCCTCTTTAGAAGATGGTCTAAAGTTCAGCGAAAGTTTTCCTGTAATGAAAACATGAGTTGCCAGTACAGCCTCTGACCGAGGTGTAAGTTGTTTGTTGTTTATTTGTGTGCTGGAAACACAGTATAACTATGTTGGTGTTTTTTTTATTAGTTGAGTAATTGAATATGTATGTTTCAGAACGAAATTAGGGGTTCAAATTCAGGGGAAACCTTTGCCCAGAAATTGATTAAGAGACTAGCTAAGCGGAGAGGAATGGTTATGATGTTAGAATTTGATCCGATTGGTCCACTCGGGTAG

mRNA sequence

ATGGCTTTCCTGTTTTTGATTTTGAGACATTGCTCCATCAACAATCTACTTGAAGAATTCGAGTACGATTCCACACATCCTATCAATTTGGGGATTGGATTCAAGGAGGATGAAATCCCTAATTTTATTGGATCCTTCTATTCCAAGACGAAAGCTATGAACGAAATTAGGGGTTCAAATTCAGGGGAAACCTTTGCCCAGAAATTGATTAAGAGACTAGCTAAGCGGAGAGGAATGGTTATGATGTTAGAATTTGATCCGATTGGTCCACTCGGGTAG

Coding sequence (CDS)

ATGGCTTTCCTGTTTTTGATTTTGAGACATTGCTCCATCAACAATCTACTTGAAGAATTCGAGTACGATTCCACACATCCTATCAATTTGGGGATTGGATTCAAGGAGGATGAAATCCCTAATTTTATTGGATCCTTCTATTCCAAGACGAAAGCTATGAACGAAATTAGGGGTTCAAATTCAGGGGAAACCTTTGCCCAGAAATTGATTAAGAGACTAGCTAAGCGGAGAGGAATGGTTATGATGTTAGAATTTGATCCGATTGGTCCACTCGGGTAG

Protein sequence

MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNEIRGSNSGETFAQKLIKRLAKRRGMVMMLEFDPIGPLG
BLAST of CsGy5G017720 vs. NCBI nr
Match: KGN51344.1 (hypothetical protein Csa_5G522900 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 3.5e-22
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 1  MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNEIRGSN 60
          MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAM  +   N
Sbjct: 1  MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMTNLSFEN 60

BLAST of CsGy5G017720 vs. NCBI nr
Match: XP_011657789.1 (PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g51810 isoform X1 [Cucumis sativus] >KGN48425.1 hypothetical protein Csa_6G486970 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0

Query: 54  NEIRGSNSGETFAQKLIKRLAKRRGMVMMLEFDPIGPLG 93
           NEIRGS+SGETFA+KLIKRLAKRRGM MMLEFDPIGPLG
Sbjct: 102 NEIRGSDSGETFAKKLIKRLAKRRGMAMMLEFDPIGPLG 140

BLAST of CsGy5G017720 vs. NCBI nr
Match: XP_004143938.1 (PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Cucumis sativus] >KGN50154.1 hypothetical protein Csa_5G156140 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYDS HPIN GIGFKEDEIPNFIGSFYSKTKAM E
Sbjct: 117 FEYDSAHPINSGIGFKEDEIPNFIGSFYSKTKAMVE 152

BLAST of CsGy5G017720 vs. NCBI nr
Match: XP_008437195.1 (PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYDS HPIN GIGFKEDEIPNFIGSFYSKTKAM E
Sbjct: 117 FEYDSAHPINSGIGFKEDEIPNFIGSFYSKTKAMVE 152

BLAST of CsGy5G017720 vs. NCBI nr
Match: XP_022958450.1 (bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase-like [Cucurbita moschata] >XP_022958451.1 bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase-like [Cucurbita moschata] >XP_022995884.1 bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase-like [Cucurbita maxima] >XP_022995885.1 bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase-like [Cucurbita maxima] >XP_022995886.1 bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase-like [Cucurbita maxima] >XP_023534026.1 bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.2 bits (173), Expect = 2.0e-09
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYDS HP+N GIGFKEDEIPNFIGSFYSKTKAM E
Sbjct: 116 FEYDSAHPLNSGIGFKEDEIPNFIGSFYSKTKAMVE 151

BLAST of CsGy5G017720 vs. TAIR10
Match: AT1G63000.1 (nucleotide-rhamnose synthase/epimerase-reductase)

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-10
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYDS HP+  GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 117 FEYDSGHPLGSGIGFKEEDTPNFTGSFYSKTKAMVE 152

BLAST of CsGy5G017720 vs. TAIR10
Match: AT1G53500.1 (NAD-dependent epimerase/dehydratase family protein)

HSP 1 Score: 60.8 bits (146), Expect = 4.9e-10
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYD+THP   GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 487 FEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVE 522

BLAST of CsGy5G017720 vs. TAIR10
Match: AT1G78570.1 (rhamnose biosynthesis 1)

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-09
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYD  HP   GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 489 FEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVE 524

BLAST of CsGy5G017720 vs. TAIR10
Match: AT3G14790.1 (rhamnose biosynthesis 3)

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-09
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYD+ HP   GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 484 FEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVE 519

BLAST of CsGy5G017720 vs. Swiss-Prot
Match: sp|Q9LQ04|RMLCD_ARATH (Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase OS=Arabidopsis thaliana OX=3702 GN=NRS/ER PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.2e-09
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYDS HP+  GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 117 FEYDSGHPLGSGIGFKEEDTPNFTGSFYSKTKAMVE 152

BLAST of CsGy5G017720 vs. Swiss-Prot
Match: sp|Q9LPG6|RHM2_ARATH (Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 OS=Arabidopsis thaliana OX=3702 GN=RHM2 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.9e-09
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYD+THP   GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 487 FEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVE 522

BLAST of CsGy5G017720 vs. Swiss-Prot
Match: sp|Q9SYM5|RHM1_ARATH (Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 OS=Arabidopsis thaliana OX=3702 GN=RHM1 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.4e-08
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYD  HP   GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 489 FEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVE 524

BLAST of CsGy5G017720 vs. Swiss-Prot
Match: sp|Q9LH76|RHM3_ARATH (Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3 OS=Arabidopsis thaliana OX=3702 GN=RHM3 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.4e-08
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYD+ HP   GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 484 FEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVE 519

BLAST of CsGy5G017720 vs. TrEMBL
Match: tr|A0A0A0KR13|A0A0A0KR13_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G522900 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.3e-22
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 1  MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNEIRGSN 60
          MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAM  +   N
Sbjct: 1  MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMTNLSFEN 60

BLAST of CsGy5G017720 vs. TrEMBL
Match: tr|A0A0A0KFD5|A0A0A0KFD5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486970 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.0e-11
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0

Query: 54  NEIRGSNSGETFAQKLIKRLAKRRGMVMMLEFDPIGPLG 93
           NEIRGS+SGETFA+KLIKRLAKRRGM MMLEFDPIGPLG
Sbjct: 102 NEIRGSDSGETFAKKLIKRLAKRRGMAMMLEFDPIGPLG 140

BLAST of CsGy5G017720 vs. TrEMBL
Match: tr|A0A1S3AU07|A0A1S3AU07_CUCME (bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase OS=Cucumis melo OX=3656 GN=LOC103482697 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.8e-10
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYDS HPIN GIGFKEDEIPNFIGSFYSKTKAM E
Sbjct: 117 FEYDSAHPINSGIGFKEDEIPNFIGSFYSKTKAMVE 152

BLAST of CsGy5G017720 vs. TrEMBL
Match: tr|A0A0A0KMP5|A0A0A0KMP5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G156140 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.8e-10
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYDS HPIN GIGFKEDEIPNFIGSFYSKTKAM E
Sbjct: 117 FEYDSAHPINSGIGFKEDEIPNFIGSFYSKTKAMVE 152

BLAST of CsGy5G017720 vs. TrEMBL
Match: tr|A0A1S3B0F0|A0A1S3B0F0_CUCME (LRR receptor-like serine/threonine-protein kinase GSO1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484690 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-09
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0

Query: 54  NEIRGSNSGETFAQKLIKRLAKRRGMVMMLEFDPIGPLG 93
           NEIRGS+SGETFA+KL+KRLAK+RGM +MLEFDP GPLG
Sbjct: 102 NEIRGSDSGETFAKKLMKRLAKQRGMAVMLEFDPFGPLG 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN51344.13.5e-2290.00hypothetical protein Csa_5G522900 [Cucumis sativus][more]
XP_011657789.11.1e-1092.31PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g51810 ... [more]
XP_004143938.11.2e-0991.67PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamn... [more]
XP_008437195.11.2e-0991.67PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamn... [more]
XP_022958450.12.0e-0988.89bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reducta... [more]
Match NameE-valueIdentityDescription
AT1G63000.12.9e-1075.00nucleotide-rhamnose synthase/epimerase-reductase[more]
AT1G53500.14.9e-1075.00NAD-dependent epimerase/dehydratase family protein[more]
AT1G78570.12.4e-0972.22rhamnose biosynthesis 1[more]
AT3G14790.12.4e-0972.22rhamnose biosynthesis 3[more]
Match NameE-valueIdentityDescription
sp|Q9LQ04|RMLCD_ARATH5.2e-0975.00Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reducta... [more]
sp|Q9LPG6|RHM2_ARATH8.9e-0975.00Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epime... [more]
sp|Q9SYM5|RHM1_ARATH4.4e-0872.22Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epime... [more]
sp|Q9LH76|RHM3_ARATH4.4e-0872.22Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epime... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0KR13|A0A0A0KR13_CUCSA2.3e-2290.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G522900 PE=4 SV=1[more]
tr|A0A0A0KFD5|A0A0A0KFD5_CUCSA7.0e-1192.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486970 PE=4 SV=1[more]
tr|A0A1S3AU07|A0A1S3AU07_CUCME7.8e-1091.67bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reducta... [more]
tr|A0A0A0KMP5|A0A0A0KMP5_CUCSA7.8e-1091.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G156140 PE=4 SV=1[more]
tr|A0A1S3B0F0|A0A1S3B0F0_CUCME3.9e-0982.05LRR receptor-like serine/threonine-protein kinase GSO1 isoform X1 OS=Cucumis mel... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G017720.1CsGy5G017720.1mRNA