CsGy5G017610 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G017610
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr5 : 23864593 .. 23865350 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAATATTGTTGTAATACTTGTTGCCTTAGTTGTTTCAACTATTCAAGAAGATGGGTATGCTTCTTCTTATTTATGTTTTGTTTATTTGAATTCAAATCCTTACTTGTTCAATAAACAAACAGCTAGCTCATTGGGTGAGCAACCAAGCATTGAATTGATTGATCAAATCTACTGTAGCTACGTGCTTATGGTAATCGTGATCTTGAATAGTTTCTTTCATGGGGTTTGTCCAATTCGATCCTTCCCATCGTTCTGGGTATTTCTGAAGATCTGTTCTTAAAACCCATGTCTAATCGCCATCGCTAATGAATGAATCTACTTTTTTTTGTAATGGGGGGTTTCACGTGATTTGGTTTCTTAATCAAACCATGCAACTTCTGTTCATTTGTGTGCTGCAGATTTTTCTGTTTAAATGCTTGCAATGGCTGAAGGTTTATTTAGTTTGAGTTTGTGGGAAGGTTTTTGGGTAATTCTTCAATGGAGGGCAGAGATTTGGAGACACCTGAAGGGATTATTAAGGATTTGGCGAAAAGGGTGGAGATGAAAGCTCCAAATGAAGCTTTTCCTTCTATGTGGAGCTTCATTCGTAATCTACCTTCATTCACTCTGCTTTTTCTTCTCGGCATTACCAAAGGTCAAACTTTGCCTTTCTTTTCAACTCTTCCACATTTTATATGTATTTTGGTTTTATTCATTTCGGGTCAAACAAGAACAAGAACAAAAACCAAACCAAACCAATCAATTTTATAA

mRNA sequence

ATGGCTTCCAATATTGTTGTAATACTTGTTGCCTTAGTTGTTTCAACTATTCAAGAAGATGGGTTTTTGGGTAATTCTTCAATGGAGGGCAGAGATTTGGAGACACCTGAAGGGATTATTAAGGATTTGGCGAAAAGGGTGGAGATGAAAGCTCCAAATGAAGCTTTTCCTTCTATGTGGAGCTTCATTCGTAATCTACCTTCATTCACTCTGCTTTTTCTTCTCGGCATTACCAAAGGTCAAACTTTGCCTTTCTTTTCAACTCTTCCACATTTTATATGTATTTTGGTTTTATTCATTTCGGGTCAAACAAGAACAAGAACAAAAACCAAACCAAACCAATCAATTTTATAA

Coding sequence (CDS)

ATGGCTTCCAATATTGTTGTAATACTTGTTGCCTTAGTTGTTTCAACTATTCAAGAAGATGGGTTTTTGGGTAATTCTTCAATGGAGGGCAGAGATTTGGAGACACCTGAAGGGATTATTAAGGATTTGGCGAAAAGGGTGGAGATGAAAGCTCCAAATGAAGCTTTTCCTTCTATGTGGAGCTTCATTCGTAATCTACCTTCATTCACTCTGCTTTTTCTTCTCGGCATTACCAAAGGTCAAACTTTGCCTTTCTTTTCAACTCTTCCACATTTTATATGTATTTTGGTTTTATTCATTTCGGGTCAAACAAGAACAAGAACAAAAACCAAACCAAACCAATCAATTTTATAA

Protein sequence

MASNIVVILVALVVSTIQEDGFLGNSSMEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKGQTLPFFSTLPHFICILVLFISGQTRTRTKTKPNQSIL

Homology

[Close]

BLAST of CsGy5G017610 vs. NCBI nr
Match: XP_004142841.1 (PREDICTED: uncharacterized membrane protein At3g27390-like [Cucumis sativus] >KGN51332.1 hypothetical protein Csa_5G517790 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 5.0e-21
Identity = 57/66 (86.36%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 28 MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKGQTLPFFS 87
          MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKG     FS
Sbjct: 1  MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKGM---IFS 60

Query: 88 TLPHFI 94
           L   I
Sbjct: 61 PLTSLI 63

[Close]

BLAST of CsGy5G017610 vs. NCBI nr
Match: XP_008458852.1 (PREDICTED: uncharacterized membrane protein At3g27390-like [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 2.1e-19
Identity = 51/62 (82.26%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 28 MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKGQTLPFFS 87
          MEGRDLETP GIIKDLAKRV+M+APNEAFPSMWSFIRNLPSFTLLFLLGITKG      +
Sbjct: 1  MEGRDLETPGGIIKDLAKRVDMEAPNEAFPSMWSFIRNLPSFTLLFLLGITKGMVFSPLT 60

Query: 88 TL 90
          +L
Sbjct: 61 SL 62

[Close]

BLAST of CsGy5G017610 vs. NCBI nr
Match: XP_022991161.1 (uncharacterized membrane protein At3g27390-like [Cucurbita maxima])

HSP 1 Score: 77.4 bits (189), Expect = 3.6e-11
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 28  MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKGQTL---- 87
           MEGRDLET EG I++L K+V ++APN A P MWSFI NLPSFT+LFLLGITKG  +    
Sbjct: 1   MEGRDLETSEG-IEELGKKVAIEAPNGAVPFMWSFICNLPSFTVLFLLGITKGAMISPLT 60

Query: 88  PFFSTLPHFICILVLF 100
               TL +   I+VL+
Sbjct: 61  SLIMTLANSSLIMVLW 75

[Close]

BLAST of CsGy5G017610 vs. NCBI nr
Match: XP_023518197.1 (uncharacterized membrane protein At3g27390-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.4 bits (189), Expect = 3.6e-11
Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 28 MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKGQTLPFFS 87
          MEGRDLET EG I++L K+V ++APN A P MWSFI NLPSFT+LFLLGITKG     FS
Sbjct: 1  MEGRDLETSEG-IEELGKKVAIEAPNGAVPFMWSFICNLPSFTVLFLLGITKG---AMFS 60

Query: 88 TLPHFICIL 97
           L   I  L
Sbjct: 61 PLTSLIMTL 65

[Close]

BLAST of CsGy5G017610 vs. NCBI nr
Match: XP_022955062.1 (uncharacterized membrane protein At3g27390-like [Cucurbita moschata])

HSP 1 Score: 75.1 bits (183), Expect = 1.8e-10
Identity = 43/69 (62.32%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 28 MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKGQTLPFFS 87
          MEGRDLET EG I++L K+V ++APN A P MWS I NLPSFT+LFLLGITKG     FS
Sbjct: 1  MEGRDLETSEG-IEELGKKVAIEAPNGAVPFMWSLICNLPSFTVLFLLGITKG---AMFS 60

Query: 88 TLPHFICIL 97
           L   I  L
Sbjct: 61 PLTSLIMTL 65

[Close]

BLAST of CsGy5G017610 vs. TrEMBL
Match: tr|A0A0A0KSC2|A0A0A0KSC2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517790 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.3e-21
Identity = 57/66 (86.36%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 28 MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKGQTLPFFS 87
          MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKG     FS
Sbjct: 1  MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKGM---IFS 60

Query: 88 TLPHFI 94
           L   I
Sbjct: 61 PLTSLI 63

[Close]

BLAST of CsGy5G017610 vs. TrEMBL
Match: tr|A0A1S3CA32|A0A1S3CA32_CUCME (uncharacterized membrane protein At3g27390-like OS=Cucumis melo OX=3656 GN=LOC103498132 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-19
Identity = 51/62 (82.26%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 28 MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKGQTLPFFS 87
          MEGRDLETP GIIKDLAKRV+M+APNEAFPSMWSFIRNLPSFTLLFLLGITKG      +
Sbjct: 1  MEGRDLETPGGIIKDLAKRVDMEAPNEAFPSMWSFIRNLPSFTLLFLLGITKGMVFSPLT 60

Query: 88 TL 90
          +L
Sbjct: 61 SL 62

The following BLAST results are available for this feature:

BLAST of CsGy5G017610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142841.1	5.0e-21	86.36	PREDICTED: uncharacterized membrane protein At3g27390-like [Cucumis sativus] >KG...	[more]
XP_008458852.1	2.1e-19	82.26	PREDICTED: uncharacterized membrane protein At3g27390-like [Cucumis melo]	[more]
XP_022991161.1	3.6e-11	57.89	uncharacterized membrane protein At3g27390-like [Cucurbita maxima]	[more]
XP_023518197.1	3.6e-11	63.77	uncharacterized membrane protein At3g27390-like [Cucurbita pepo subsp. pepo]	[more]
XP_022955062.1	1.8e-10	62.32	uncharacterized membrane protein At3g27390-like [Cucurbita moschata]	[more]

BLAST of CsGy5G017610 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G017610 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G017610 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KSC2\|A0A0A0KSC2_CUCSA	3.3e-21	86.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517790 PE=4 SV=1	[more]
tr\|A0A1S3CA32\|A0A1S3CA32_CUCME	1.4e-19	82.26	uncharacterized membrane protein At3g27390-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G017610.1	CsGy5G017610.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G017610	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G017610	Watermelon (97103) v2	cgybwmbB389
CsGy5G017610	Wax gourd	cgybwgoB448
CsGy5G017610	Cucurbita maxima (Rimu)	cgybcmaB610
CsGy5G017610	Cucurbita maxima (Rimu)	cgybcmaB649
CsGy5G017610	Cucurbita moschata (Rifu)	cgybcmoB585
CsGy5G017610	Cucurbita moschata (Rifu)	cgybcmoB626
CsGy5G017610	Cucurbita pepo (Zucchini)	cgybcpeB599
CsGy5G017610	Cucurbita pepo (Zucchini)	cgybcpeB627
CsGy5G017610	Cucumber (Chinese Long) v2	cgybcuB223
CsGy5G017610	Bottle gourd (USVL1VR-Ls)	cgyblsiB318
CsGy5G017610	Melon (DHL92) v3.5.1	cgybmeB300
CsGy5G017610	Melon (DHL92) v3.6.1	cgybmedB300
CsGy5G017610	Watermelon (Charleston Gray)	cgybwcgB314
CsGy5G017610	Watermelon (97103) v1	cgybwmB339
CsGy5G017610	Wild cucumber (PI 183967)	cgybcpiB225
CsGy5G017610	Silver-seed gourd	carcgybB0281
CsGy5G017610	Silver-seed gourd	carcgybB0685