CsGy5G017610 (gene) Cucumber (Gy14) v2

NameCsGy5G017610
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr5 : 23864593 .. 23865350 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAATATTGTTGTAATACTTGTTGCCTTAGTTGTTTCAACTATTCAAGAAGATGGGTATGCTTCTTCTTATTTATGTTTTGTTTATTTGAATTCAAATCCTTACTTGTTCAATAAACAAACAGCTAGCTCATTGGGTGAGCAACCAAGCATTGAATTGATTGATCAAATCTACTGTAGCTACGTGCTTATGGTAATCGTGATCTTGAATAGTTTCTTTCATGGGGTTTGTCCAATTCGATCCTTCCCATCGTTCTGGGTATTTCTGAAGATCTGTTCTTAAAACCCATGTCTAATCGCCATCGCTAATGAATGAATCTACTTTTTTTTGTAATGGGGGGTTTCACGTGATTTGGTTTCTTAATCAAACCATGCAACTTCTGTTCATTTGTGTGCTGCAGATTTTTCTGTTTAAATGCTTGCAATGGCTGAAGGTTTATTTAGTTTGAGTTTGTGGGAAGGTTTTTGGGTAATTCTTCAATGGAGGGCAGAGATTTGGAGACACCTGAAGGGATTATTAAGGATTTGGCGAAAAGGGTGGAGATGAAAGCTCCAAATGAAGCTTTTCCTTCTATGTGGAGCTTCATTCGTAATCTACCTTCATTCACTCTGCTTTTTCTTCTCGGCATTACCAAAGGTCAAACTTTGCCTTTCTTTTCAACTCTTCCACATTTTATATGTATTTTGGTTTTATTCATTTCGGGTCAAACAAGAACAAGAACAAAAACCAAACCAAACCAATCAATTTTATAA

mRNA sequence

ATGGCTTCCAATATTGTTGTAATACTTGTTGCCTTAGTTGTTTCAACTATTCAAGAAGATGGGTTTTTGGGTAATTCTTCAATGGAGGGCAGAGATTTGGAGACACCTGAAGGGATTATTAAGGATTTGGCGAAAAGGGTGGAGATGAAAGCTCCAAATGAAGCTTTTCCTTCTATGTGGAGCTTCATTCGTAATCTACCTTCATTCACTCTGCTTTTTCTTCTCGGCATTACCAAAGGTCAAACTTTGCCTTTCTTTTCAACTCTTCCACATTTTATATGTATTTTGGTTTTATTCATTTCGGGTCAAACAAGAACAAGAACAAAAACCAAACCAAACCAATCAATTTTATAA

Coding sequence (CDS)

ATGGCTTCCAATATTGTTGTAATACTTGTTGCCTTAGTTGTTTCAACTATTCAAGAAGATGGGTTTTTGGGTAATTCTTCAATGGAGGGCAGAGATTTGGAGACACCTGAAGGGATTATTAAGGATTTGGCGAAAAGGGTGGAGATGAAAGCTCCAAATGAAGCTTTTCCTTCTATGTGGAGCTTCATTCGTAATCTACCTTCATTCACTCTGCTTTTTCTTCTCGGCATTACCAAAGGTCAAACTTTGCCTTTCTTTTCAACTCTTCCACATTTTATATGTATTTTGGTTTTATTCATTTCGGGTCAAACAAGAACAAGAACAAAAACCAAACCAAACCAATCAATTTTATAA

Protein sequence

MASNIVVILVALVVSTIQEDGFLGNSSMEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKGQTLPFFSTLPHFICILVLFISGQTRTRTKTKPNQSIL
BLAST of CsGy5G017610 vs. NCBI nr
Match: XP_004142841.1 (PREDICTED: uncharacterized membrane protein At3g27390-like [Cucumis sativus] >KGN51332.1 hypothetical protein Csa_5G517790 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 5.0e-21
Identity = 57/66 (86.36%), Postives = 57/66 (86.36%), Query Frame = 0

Query: 28 MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKGQTLPFFS 87
          MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKG     FS
Sbjct: 1  MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKGM---IFS 60

Query: 88 TLPHFI 94
           L   I
Sbjct: 61 PLTSLI 63

BLAST of CsGy5G017610 vs. NCBI nr
Match: XP_008458852.1 (PREDICTED: uncharacterized membrane protein At3g27390-like [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 2.1e-19
Identity = 51/62 (82.26%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 28 MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKGQTLPFFS 87
          MEGRDLETP GIIKDLAKRV+M+APNEAFPSMWSFIRNLPSFTLLFLLGITKG      +
Sbjct: 1  MEGRDLETPGGIIKDLAKRVDMEAPNEAFPSMWSFIRNLPSFTLLFLLGITKGMVFSPLT 60

Query: 88 TL 90
          +L
Sbjct: 61 SL 62

BLAST of CsGy5G017610 vs. NCBI nr
Match: XP_022991161.1 (uncharacterized membrane protein At3g27390-like [Cucurbita maxima])

HSP 1 Score: 77.4 bits (189), Expect = 3.6e-11
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 28  MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKGQTL---- 87
           MEGRDLET EG I++L K+V ++APN A P MWSFI NLPSFT+LFLLGITKG  +    
Sbjct: 1   MEGRDLETSEG-IEELGKKVAIEAPNGAVPFMWSFICNLPSFTVLFLLGITKGAMISPLT 60

Query: 88  PFFSTLPHFICILVLF 100
               TL +   I+VL+
Sbjct: 61  SLIMTLANSSLIMVLW 75

BLAST of CsGy5G017610 vs. NCBI nr
Match: XP_023518197.1 (uncharacterized membrane protein At3g27390-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.4 bits (189), Expect = 3.6e-11
Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 28 MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKGQTLPFFS 87
          MEGRDLET EG I++L K+V ++APN A P MWSFI NLPSFT+LFLLGITKG     FS
Sbjct: 1  MEGRDLETSEG-IEELGKKVAIEAPNGAVPFMWSFICNLPSFTVLFLLGITKG---AMFS 60

Query: 88 TLPHFICIL 97
           L   I  L
Sbjct: 61 PLTSLIMTL 65

BLAST of CsGy5G017610 vs. NCBI nr
Match: XP_022955062.1 (uncharacterized membrane protein At3g27390-like [Cucurbita moschata])

HSP 1 Score: 75.1 bits (183), Expect = 1.8e-10
Identity = 43/69 (62.32%), Postives = 49/69 (71.01%), Query Frame = 0

Query: 28 MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKGQTLPFFS 87
          MEGRDLET EG I++L K+V ++APN A P MWS I NLPSFT+LFLLGITKG     FS
Sbjct: 1  MEGRDLETSEG-IEELGKKVAIEAPNGAVPFMWSLICNLPSFTVLFLLGITKG---AMFS 60

Query: 88 TLPHFICIL 97
           L   I  L
Sbjct: 61 PLTSLIMTL 65

BLAST of CsGy5G017610 vs. TrEMBL
Match: tr|A0A0A0KSC2|A0A0A0KSC2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517790 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.3e-21
Identity = 57/66 (86.36%), Postives = 57/66 (86.36%), Query Frame = 0

Query: 28 MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKGQTLPFFS 87
          MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKG     FS
Sbjct: 1  MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKGM---IFS 60

Query: 88 TLPHFI 94
           L   I
Sbjct: 61 PLTSLI 63

BLAST of CsGy5G017610 vs. TrEMBL
Match: tr|A0A1S3CA32|A0A1S3CA32_CUCME (uncharacterized membrane protein At3g27390-like OS=Cucumis melo OX=3656 GN=LOC103498132 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-19
Identity = 51/62 (82.26%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 28 MEGRDLETPEGIIKDLAKRVEMKAPNEAFPSMWSFIRNLPSFTLLFLLGITKGQTLPFFS 87
          MEGRDLETP GIIKDLAKRV+M+APNEAFPSMWSFIRNLPSFTLLFLLGITKG      +
Sbjct: 1  MEGRDLETPGGIIKDLAKRVDMEAPNEAFPSMWSFIRNLPSFTLLFLLGITKGMVFSPLT 60

Query: 88 TL 90
          +L
Sbjct: 61 SL 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004142841.15.0e-2186.36PREDICTED: uncharacterized membrane protein At3g27390-like [Cucumis sativus] >KG... [more]
XP_008458852.12.1e-1982.26PREDICTED: uncharacterized membrane protein At3g27390-like [Cucumis melo][more]
XP_022991161.13.6e-1157.89uncharacterized membrane protein At3g27390-like [Cucurbita maxima][more]
XP_023518197.13.6e-1163.77uncharacterized membrane protein At3g27390-like [Cucurbita pepo subsp. pepo][more]
XP_022955062.11.8e-1062.32uncharacterized membrane protein At3g27390-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KSC2|A0A0A0KSC2_CUCSA3.3e-2186.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517790 PE=4 SV=1[more]
tr|A0A1S3CA32|A0A1S3CA32_CUCME1.4e-1982.26uncharacterized membrane protein At3g27390-like OS=Cucumis melo OX=3656 GN=LOC10... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G017610.1CsGy5G017610.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None