CsGy5G016660 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G016660
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	LOW QUALITY PROTEIN: nucleolar complex protein 2 homolog
Location	Chr5 : 23048222 .. 23048594 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATTTCTGAGGGGGTCCTTTGTTGAGTTATGCTCTCTTGATGTCCATAGATCTACTACGAACGAAGAAGAAAGTAAGCTGTCAGGATCCCTTATCTTACTTCCTCAAGTCATGAAATTTAAATGTATTACTGTTTGTTCGAACTTACGGGAAGCCTATTTGCATTTAAAAGACTCTTCCACCACTTGTTTGTCCTACATGTTATACCTTTCCATGCTTTATTAACTTATATGAATGTTCTTGTATTCGTGATTAAGAAACTAGACTATTCTTCCCTGAACTGGCTACTATTCCACTTATTCAACTCAATAAGTTTCATGCGACATCTACAACAGAGAATCTCAAGCATTTGGTGGTGACTCAAACATAA

mRNA sequence

ATGCAATTTCTGAGGGGGTCCTTTGTTGAGTTATGCTCTCTTGATGTCCATAGATCTACTACGAACGAAGAAGAAAAAACTAGACTATTCTTCCCTGAACTGGCTACTATTCCACTTATTCAACTCAATAAGTTTCATGCGACATCTACAACAGAGAATCTCAAGCATTTGGTGGTGACTCAAACATAA

Coding sequence (CDS)

ATGCAATTTCTGAGGGGGTCCTTTGTTGAGTTATGCTCTCTTGATGTCCATAGATCTACTACGAACGAAGAAGAAAAAACTAGACTATTCTTCCCTGAACTGGCTACTATTCCACTTATTCAACTCAATAAGTTTCATGCGACATCTACAACAGAGAATCTCAAGCATTTGGTGGTGACTCAAACATAA

Protein sequence

MQFLRGSFVELCSLDVHRSTTNEEEKTRLFFPELATIPLIQLNKFHATSTTENLKHLVVTQT

Homology

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BLAST of CsGy5G016660 vs. NCBI nr
Match: XP_016901916.1 (PREDICTED: LOW QUALITY PROTEIN: nucleolar complex protein 2 homolog [Cucumis melo])

HSP 1 Score: 56.2 bits (134), Expect = 4.5e-05
Identity = 32/54 (59.26%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 7   SFVELCSLDVHR--STTNEEEKTRLFFPELATIPLIQLNKFHATSTTENLKHLV 59
           +FVE C L      S+   +    + FPELATIPLIQL KFHATSTTENLK LV
Sbjct: 561 NFVEECVLSTIELLSSHFSQWSHHISFPELATIPLIQLKKFHATSTTENLKRLV 614

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BLAST of CsGy5G016660 vs. NCBI nr
Match: XP_011651273.1 (PREDICTED: nucleolar complex protein 2 homolog [Cucumis sativus] >XP_011651274.1 PREDICTED: nucleolar complex protein 2 homolog [Cucumis sativus] >XP_011651275.1 PREDICTED: nucleolar complex protein 2 homolog [Cucumis sativus] >KGN57576.1 hypothetical protein Csa_3G215640 [Cucumis sativus])

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-04
Identity = 31/54 (57.41%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 7   SFVELCSLDVHR--STTNEEEKTRLFFPELATIPLIQLNKFHATSTTENLKHLV 59
           +FVE C L      S+   +    + FPELATIPLIQL KFHA STTENLK LV
Sbjct: 562 NFVEECVLSTIELLSSHFSQWSHHISFPELATIPLIQLKKFHAASTTENLKRLV 615

[Close]

BLAST of CsGy5G016660 vs. NCBI nr
Match: XP_022133964.1 (nucleolar complex protein 2 homolog isoform X1 [Momordica charantia])

HSP 1 Score: 52.8 bits (125), Expect = 5.0e-04
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 31  FPELATIPLIQLNKFHATSTTENLKHLV 59
           FPELATIPLIQL KFHAT+TTENLK LV
Sbjct: 589 FPELATIPLIQLKKFHATTTTENLKRLV 616

[Close]

BLAST of CsGy5G016660 vs. NCBI nr
Match: XP_022133965.1 (nucleolar complex protein 2 homolog isoform X2 [Momordica charantia])

HSP 1 Score: 52.8 bits (125), Expect = 5.0e-04
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 31  FPELATIPLIQLNKFHATSTTENLKHLV 59
           FPELATIPLIQL KFHAT+TTENLK LV
Sbjct: 533 FPELATIPLIQLKKFHATTTTENLKRLV 560

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BLAST of CsGy5G016660 vs. TrEMBL
Match: tr|A0A1S4E108|A0A1S4E108_CUCME (LOW QUALITY PROTEIN: nucleolar complex protein 2 homolog OS=Cucumis melo OX=3656 GN=LOC103496135 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-05
Identity = 32/54 (59.26%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 7   SFVELCSLDVHR--STTNEEEKTRLFFPELATIPLIQLNKFHATSTTENLKHLV 59
           +FVE C L      S+   +    + FPELATIPLIQL KFHATSTTENLK LV
Sbjct: 561 NFVEECVLSTIELLSSHFSQWSHHISFPELATIPLIQLKKFHATSTTENLKRLV 614

[Close]

BLAST of CsGy5G016660 vs. TrEMBL
Match: tr|A0A0A0LC17|A0A0A0LC17_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G215640 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-04
Identity = 31/54 (57.41%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 7   SFVELCSLDVHR--STTNEEEKTRLFFPELATIPLIQLNKFHATSTTENLKHLV 59
           +FVE C L      S+   +    + FPELATIPLIQL KFHA STTENLK LV
Sbjct: 562 NFVEECVLSTIELLSSHFSQWSHHISFPELATIPLIQLKKFHAASTTENLKRLV 615

The following BLAST results are available for this feature:

BLAST of CsGy5G016660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901916.1	4.5e-05	59.26	PREDICTED: LOW QUALITY PROTEIN: nucleolar complex protein 2 homolog [Cucumis mel...	[more]
XP_011651273.1	1.7e-04	57.41	PREDICTED: nucleolar complex protein 2 homolog [Cucumis sativus] >XP_011651274.1...	[more]
XP_022133964.1	5.0e-04	89.29	nucleolar complex protein 2 homolog isoform X1 [Momordica charantia]	[more]
XP_022133965.1	5.0e-04	89.29	nucleolar complex protein 2 homolog isoform X2 [Momordica charantia]	[more]

BLAST of CsGy5G016660 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G016660 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G016660 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E108\|A0A1S4E108_CUCME	3.0e-05	59.26	LOW QUALITY PROTEIN: nucleolar complex protein 2 homolog OS=Cucumis melo OX=3656...	[more]
tr\|A0A0A0LC17\|A0A0A0LC17_CUCSA	1.1e-04	57.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G215640 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G016660.1	CsGy5G016660.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G016660	Wax gourd	cgybwgoB440
CsGy5G016660	Cucurbita maxima (Rimu)	cgybcmaB610
CsGy5G016660	Cucurbita maxima (Rimu)	cgybcmaB649
CsGy5G016660	Cucurbita moschata (Rifu)	cgybcmoB585
CsGy5G016660	Cucurbita moschata (Rifu)	cgybcmoB626
CsGy5G016660	Cucurbita pepo (Zucchini)	cgybcpeB599
CsGy5G016660	Cucurbita pepo (Zucchini)	cgybcpeB627
CsGy5G016660	Cucumber (Chinese Long) v2	cgybcuB223
CsGy5G016660	Bottle gourd (USVL1VR-Ls)	cgyblsiB318
CsGy5G016660	Melon (DHL92) v3.5.1	cgybmeB300
CsGy5G016660	Melon (DHL92) v3.6.1	cgybmedB300
CsGy5G016660	Watermelon (Charleston Gray)	cgybwcgB314
CsGy5G016660	Watermelon (97103) v1	cgybwmB339
CsGy5G016660	Wild cucumber (PI 183967)	cgybcpiB225
CsGy5G016660	Silver-seed gourd	carcgybB0281
CsGy5G016660	Silver-seed gourd	carcgybB0685
CsGy5G016660	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G016660	Watermelon (97103) v2	cgybwmbB389