CsGy5G016260 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G016260
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Hydrolase, hydrolyzing O-glycosyl compounds, putative
Location	Chr5 : 22596850 .. 22597266 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACCATCCTCTTAGTGGTGAGTGCGTGCGAATGAACAAAAAGTACCAACTAGGAGTTAGTAGCTGCAAGACATCAAATCGTTGGAGTCACGAACAAGATGGCACTCCAATTAAGTTGGCAGGATCTATATTGTGTTTGCAAGCTGTAGGAGATGGACTCCCTCCAATTCTATCTAAAGACTGCTCAAGCCAACAAAGTGCATGGAAATATGCTTCAAATGCTAAGCTTCAACTGGCCACTGTTGATGAAGAAGGACAAGCCTTGTGTTTGCAAAGGGCTTCTCATTCCCATCAAATTTTGACTAACAAATGCATGTGTCCTAATGATTCTGAATGCCAAGGAGATCCACAAAGTCAATGGTTTACACTTGTACATCAAATGTACATCTCAATTAATTTATGTACAAAATTGTAA

mRNA sequence

ATGTACCATCCTCTTAGTGGTGAGTGCGTGCGAATGAACAAAAAGTACCAACTAGGAGTTAGTAGCTGCAAGACATCAAATCGTTGGAGTCACGAACAAGATGGCACTCCAATTAAGTTGGCAGGATCTATATTGTGTTTGCAAGCTGTAGGAGATGGACTCCCTCCAATTCTATCTAAAGACTGCTCAAGCCAACAAAGTGCATGGAAATATGCTTCAAATGCTAAGCTTCAACTGGCCACTGTTGATGAAGAAGGACAAGCCTTGTGTTTGCAAAGGGCTTCTCATTCCCATCAAATTTTGACTAACAAATGCATGTGTCCTAATGATTCTGAATGCCAAGGAGATCCACAAAGTCAATGGTTTACACTTGTACATCAAATGTACATCTCAATTAATTTATGTACAAAATTGTAA

Coding sequence (CDS)

ATGTACCATCCTCTTAGTGGTGAGTGCGTGCGAATGAACAAAAAGTACCAACTAGGAGTTAGTAGCTGCAAGACATCAAATCGTTGGAGTCACGAACAAGATGGCACTCCAATTAAGTTGGCAGGATCTATATTGTGTTTGCAAGCTGTAGGAGATGGACTCCCTCCAATTCTATCTAAAGACTGCTCAAGCCAACAAAGTGCATGGAAATATGCTTCAAATGCTAAGCTTCAACTGGCCACTGTTGATGAAGAAGGACAAGCCTTGTGTTTGCAAAGGGCTTCTCATTCCCATCAAATTTTGACTAACAAATGCATGTGTCCTAATGATTCTGAATGCCAAGGAGATCCACAAAGTCAATGGTTTACACTTGTACATCAAATGTACATCTCAATTAATTTATGTACAAAATTGTAA

Protein sequence

MYHPLSGECVRMNKKYQLGVSSCKTSNRWSHEQDGTPIKLAGSILCLQAVGDGLPPILSKDCSSQQSAWKYASNAKLQLATVDEEGQALCLQRASHSHQILTNKCMCPNDSECQGDPQSQWFTLVHQMYISINLCTKL

Homology

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BLAST of CsGy5G016260 vs. NCBI nr
Match: XP_008459280.1 (PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo])

HSP 1 Score: 240.7 bits (613), Expect = 2.9e-60
Identity = 109/125 (87.20%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MYHPLSGECVRMNKKYQLGVSSCKTSNRWSHEQDGTPIKLAGSILCLQAVGDGLPPILSK 60
           MYHPLSG C+RMNKKYQLG+SSCKTSNRWSHEQDG PIKLAGSILCL+A+G GLPPILS+
Sbjct: 587 MYHPLSGGCMRMNKKYQLGISSCKTSNRWSHEQDGAPIKLAGSILCLKAIGVGLPPILSQ 646

Query: 61  DCSSQQSAWKYASNAKLQLATVDEEGQALCLQRASHSHQILTNKCMCPNDSECQGDPQSQ 120
           DCSSQQS WKY SNAKLQLATVDE+GQALCLQRASHSHQI+TNKC+C NDS+CQ DPQSQ
Sbjct: 647 DCSSQQSIWKYGSNAKLQLATVDEQGQALCLQRASHSHQIVTNKCLCSNDSQCQEDPQSQ 706

Query: 121 WFTLV 126
           WFTLV
Sbjct: 707 WFTLV 711

[Close]

BLAST of CsGy5G016260 vs. NCBI nr
Match: XP_008467257.1 (PREDICTED: endoglucanase-like [Cucumis melo])

HSP 1 Score: 238.8 bits (608), Expect = 1.1e-59
Identity = 109/125 (87.20%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MYHPLSGECVRMNKKYQLGVSSCKTSNRWSHEQDGTPIKLAGSILCLQAVGDGLPPILSK 60
           MYHPLSG CVRMNKKYQLG+SSCKTSNRWSHEQDG PIKLAGSILCL+A+G GLPPILS+
Sbjct: 407 MYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEQDGAPIKLAGSILCLKAIGVGLPPILSQ 466

Query: 61  DCSSQQSAWKYASNAKLQLATVDEEGQALCLQRASHSHQILTNKCMCPNDSECQGDPQSQ 120
           DCSSQQS W+YASNAKLQLATVDE+GQALCLQRASHSHQI+TNKC+C  DS+CQ DPQSQ
Sbjct: 467 DCSSQQSIWRYASNAKLQLATVDEQGQALCLQRASHSHQIVTNKCLCTIDSQCQEDPQSQ 526

Query: 121 WFTLV 126
           WFTLV
Sbjct: 527 WFTLV 531

[Close]

BLAST of CsGy5G016260 vs. NCBI nr
Match: KGN57438.1 (hypothetical protein Csa_3G185670 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 2.1e-58
Identity = 109/113 (96.46%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MYHPLSGECVRMNKKYQLGVSSCKTSNRWSHEQDGTPIKLAGSILCLQAVGDGLPPILSK 60
           MYHPLSGECVRMNKKYQLGVSSCKTSNRWSHEQD TPIKLAGSILCLQAVGDGLPPILSK
Sbjct: 315 MYHPLSGECVRMNKKYQLGVSSCKTSNRWSHEQDDTPIKLAGSILCLQAVGDGLPPILSK 374

Query: 61  DCSSQQSAWKYASNAKLQLATVDEEGQALCLQRASHSHQILTNKCMCPNDSEC 114
           DCSSQQSAWKYASNAKLQLATVDE+GQALCLQRASHSHQILTNKC+CPNDS+C
Sbjct: 375 DCSSQQSAWKYASNAKLQLATVDEQGQALCLQRASHSHQILTNKCICPNDSDC 427

[Close]

BLAST of CsGy5G016260 vs. NCBI nr
Match: XP_011652778.1 (PREDICTED: uncharacterized protein LOC105435091 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 2.1e-58
Identity = 109/113 (96.46%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MYHPLSGECVRMNKKYQLGVSSCKTSNRWSHEQDGTPIKLAGSILCLQAVGDGLPPILSK 60
           MYHPLSGECVRMNKKYQLGVSSCKTSNRWSHEQD TPIKLAGSILCLQAVGDGLPPILSK
Sbjct: 497 MYHPLSGECVRMNKKYQLGVSSCKTSNRWSHEQDDTPIKLAGSILCLQAVGDGLPPILSK 556

Query: 61  DCSSQQSAWKYASNAKLQLATVDEEGQALCLQRASHSHQILTNKCMCPNDSEC 114
           DCSSQQSAWKYASNAKLQLATVDE+GQALCLQRASHSHQILTNKC+CPNDS+C
Sbjct: 557 DCSSQQSAWKYASNAKLQLATVDEQGQALCLQRASHSHQILTNKCICPNDSDC 609

[Close]

BLAST of CsGy5G016260 vs. NCBI nr
Match: KGN50395.1 (hypothetical protein Csa_5G171770 [Cucumis sativus])

HSP 1 Score: 230.7 bits (587), Expect = 3.0e-57
Identity = 106/126 (84.13%), Postives = 117/126 (92.86%), Query Frame = 0


Query: 1   MYHPLSGECVRMNKKYQLGVSSCKTSNRWSHEQDGTPIKLAGSILCLQAVGDGLPPILSK 60
           MYHPLSG CVRMNKKYQLG+SSCKTSNRW HEQD +PIKLAGS+LCL+A+G GLPPILS+
Sbjct: 406 MYHPLSGGCVRMNKKYQLGISSCKTSNRWIHEQDSSPIKLAGSVLCLKAIGVGLPPILSQ 465

Query: 61  DCSSQQSAWKYASNAKLQLATVDEEGQALCLQR-ASHSHQILTNKCMCPNDSECQGDPQS 120
           DCSSQQS WKY S+AKLQLATVDE+GQALCLQR ASHSHQI+TNKC+C NDS+CQ DPQS
Sbjct: 466 DCSSQQSIWKYGSSAKLQLATVDEQGQALCLQRAASHSHQIVTNKCLCSNDSQCQEDPQS 525

Query: 121 QWFTLV 126
           QWFTLV
Sbjct: 526 QWFTLV 531

[Close]

BLAST of CsGy5G016260 vs. TAIR10
Match: AT3G26130.1 (Cellulase (glycosyl hydrolase family 5) protein)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-14
Identity = 45/127 (35.43%), Postives = 66/127 (51.97%), Query Frame = 0


Query: 1   MYHPLSGECVRMNKKYQLGVSSCKTSNRWSHEQDGTPIKLAGSILCLQAVGDGLPPILSK 60
           M+HP +G C+     +QL + SC  S  W              ILCL+A   G    L  
Sbjct: 398 MFHPSTGLCIVRKSLFQLKLGSCNRSESWRLSSHRVLSLAEEQILCLKAYEKGKSVKLRL 457

Query: 61  DCS-SQQSAWKYASNAKLQLATVDEEGQALCLQRASHSHQILTNKCMC-PNDSECQGDPQ 120
             S S  S WK  S++K+QL+++ + G ++CL   + ++ I+TN C C   +S C  DP+
Sbjct: 458 FFSESYCSKWKLFSDSKMQLSSITKNGFSVCLDVDTENNNIVTNSCKCLRGNSSC--DPR 517

Query: 121 SQWFTLV 126
           SQWF LV
Sbjct: 518 SQWFKLV 522

[Close]

BLAST of CsGy5G016260 vs. Swiss-Prot
Match: sp|C0HLA0|GH5FP_CHAOB (Glycosyl hydrolase 5 family protein OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.3e-15
Identity = 48/134 (35.82%), Postives = 77/134 (57.46%), Query Frame = 0


Query: 1   MYHPLSGECVRMNKKYQLGVSSCKT-SNRWSHEQD-GTPIKLAGSILCLQAVGDGLPPIL 60
           +YHP SG CV       + + SC++  +RW+++     PI L GS  C+   G+GLP I+
Sbjct: 412 IYHPASGLCVESGIGNTVHLGSCQSVRSRWNYDASVKGPIGLMGSSSCISTQGNGLPAIM 471

Query: 61  SKDCSS-QQSAWKYASNAKLQLAT----VDEEGQALCLQRASHSHQILTNKCMCPNDSEC 120
           +++CS+   + W   S+A+LQL T     D + + +CL   S S  I TN+C+C  DS C
Sbjct: 472 TENCSAPNNTLWSTVSSAQLQLGTRVLGKDGKEKWMCLD-GSKSPLISTNECICITDSHC 531

Query: 121 --QGDPQSQWFTLV 126
             + +P+ QWF ++
Sbjct: 532 YPKLNPEKQWFKVI 544

[Close]

BLAST of CsGy5G016260 vs. TrEMBL
Match: tr|A0A1S3C9U1|A0A1S3C9U1_CUCME (uncharacterized protein LOC103498458 OS=Cucumis melo OX=3656 GN=LOC103498458 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.9e-60
Identity = 109/125 (87.20%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MYHPLSGECVRMNKKYQLGVSSCKTSNRWSHEQDGTPIKLAGSILCLQAVGDGLPPILSK 60
           MYHPLSG C+RMNKKYQLG+SSCKTSNRWSHEQDG PIKLAGSILCL+A+G GLPPILS+
Sbjct: 587 MYHPLSGGCMRMNKKYQLGISSCKTSNRWSHEQDGAPIKLAGSILCLKAIGVGLPPILSQ 646

Query: 61  DCSSQQSAWKYASNAKLQLATVDEEGQALCLQRASHSHQILTNKCMCPNDSECQGDPQSQ 120
           DCSSQQS WKY SNAKLQLATVDE+GQALCLQRASHSHQI+TNKC+C NDS+CQ DPQSQ
Sbjct: 647 DCSSQQSIWKYGSNAKLQLATVDEQGQALCLQRASHSHQIVTNKCLCSNDSQCQEDPQSQ 706

Query: 121 WFTLV 126
           WFTLV
Sbjct: 707 WFTLV 711

[Close]

BLAST of CsGy5G016260 vs. TrEMBL
Match: tr|A0A1S3CT43|A0A1S3CT43_CUCME (endoglucanase-like OS=Cucumis melo OX=3656 GN=LOC103504654 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 7.2e-60
Identity = 109/125 (87.20%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MYHPLSGECVRMNKKYQLGVSSCKTSNRWSHEQDGTPIKLAGSILCLQAVGDGLPPILSK 60
           MYHPLSG CVRMNKKYQLG+SSCKTSNRWSHEQDG PIKLAGSILCL+A+G GLPPILS+
Sbjct: 407 MYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEQDGAPIKLAGSILCLKAIGVGLPPILSQ 466

Query: 61  DCSSQQSAWKYASNAKLQLATVDEEGQALCLQRASHSHQILTNKCMCPNDSECQGDPQSQ 120
           DCSSQQS W+YASNAKLQLATVDE+GQALCLQRASHSHQI+TNKC+C  DS+CQ DPQSQ
Sbjct: 467 DCSSQQSIWRYASNAKLQLATVDEQGQALCLQRASHSHQIVTNKCLCTIDSQCQEDPQSQ 526

Query: 121 WFTLV 126
           WFTLV
Sbjct: 527 WFTLV 531

[Close]

BLAST of CsGy5G016260 vs. TrEMBL
Match: tr|A0A0A0L6S7|A0A0A0L6S7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G185670 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.4e-58
Identity = 109/113 (96.46%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MYHPLSGECVRMNKKYQLGVSSCKTSNRWSHEQDGTPIKLAGSILCLQAVGDGLPPILSK 60
           MYHPLSGECVRMNKKYQLGVSSCKTSNRWSHEQD TPIKLAGSILCLQAVGDGLPPILSK
Sbjct: 315 MYHPLSGECVRMNKKYQLGVSSCKTSNRWSHEQDDTPIKLAGSILCLQAVGDGLPPILSK 374

Query: 61  DCSSQQSAWKYASNAKLQLATVDEEGQALCLQRASHSHQILTNKCMCPNDSEC 114
           DCSSQQSAWKYASNAKLQLATVDE+GQALCLQRASHSHQILTNKC+CPNDS+C
Sbjct: 375 DCSSQQSAWKYASNAKLQLATVDEQGQALCLQRASHSHQILTNKCICPNDSDC 427

[Close]

BLAST of CsGy5G016260 vs. TrEMBL
Match: tr|A0A0A0KL32|A0A0A0KL32_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G171770 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.0e-57
Identity = 106/126 (84.13%), Postives = 117/126 (92.86%), Query Frame = 0


Query: 1   MYHPLSGECVRMNKKYQLGVSSCKTSNRWSHEQDGTPIKLAGSILCLQAVGDGLPPILSK 60
           MYHPLSG CVRMNKKYQLG+SSCKTSNRW HEQD +PIKLAGS+LCL+A+G GLPPILS+
Sbjct: 406 MYHPLSGGCVRMNKKYQLGISSCKTSNRWIHEQDSSPIKLAGSVLCLKAIGVGLPPILSQ 465

Query: 61  DCSSQQSAWKYASNAKLQLATVDEEGQALCLQR-ASHSHQILTNKCMCPNDSECQGDPQS 120
           DCSSQQS WKY S+AKLQLATVDE+GQALCLQR ASHSHQI+TNKC+C NDS+CQ DPQS
Sbjct: 466 DCSSQQSIWKYGSSAKLQLATVDEQGQALCLQRAASHSHQIVTNKCLCSNDSQCQEDPQS 525

Query: 121 QWFTLV 126
           QWFTLV
Sbjct: 526 QWFTLV 531

[Close]

BLAST of CsGy5G016260 vs. TrEMBL
Match: tr|A0A0A0KNB6|A0A0A0KNB6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G171760 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 4.4e-57
Identity = 104/126 (82.54%), Postives = 117/126 (92.86%), Query Frame = 0


Query: 1   MYHPLSGECVRMNKKYQLGVSSCKTSNRWSHEQDGTPIKLAGSILCLQAVGDGLPPILSK 60
           MYHPLSG CVRMNKKYQLG+SSCKTSNRW HEQD +PIKLAGS+LCL+A+G GLPPILS+
Sbjct: 406 MYHPLSGGCVRMNKKYQLGISSCKTSNRWIHEQDSSPIKLAGSVLCLKAIGVGLPPILSQ 465

Query: 61  DCSSQQSAWKYASNAKLQLATVDEEGQALCLQR-ASHSHQILTNKCMCPNDSECQGDPQS 120
           DCSSQQS WKY SNAKLQLAT+DE+GQALCLQR ASHSHQ++TNKC+C +DS+CQ DPQS
Sbjct: 466 DCSSQQSIWKYGSNAKLQLATIDEQGQALCLQRAASHSHQLVTNKCLCSSDSQCQEDPQS 525

Query: 121 QWFTLV 126
           QWFTLV
Sbjct: 526 QWFTLV 531

The following BLAST results are available for this feature:

BLAST of CsGy5G016260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459280.1	2.9e-60	87.20	PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo]	[more]
XP_008467257.1	1.1e-59	87.20	PREDICTED: endoglucanase-like [Cucumis melo]	[more]
KGN57438.1	2.1e-58	96.46	hypothetical protein Csa_3G185670 [Cucumis sativus]	[more]
XP_011652778.1	2.1e-58	96.46	PREDICTED: uncharacterized protein LOC105435091 [Cucumis sativus]	[more]
KGN50395.1	3.0e-57	84.13	hypothetical protein Csa_5G171770 [Cucumis sativus]	[more]

BLAST of CsGy5G016260 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26130.1	1.0e-14	35.43	Cellulase (glycosyl hydrolase family 5) protein	[more]

BLAST of CsGy5G016260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|C0HLA0\|GH5FP_CHAOB	7.3e-15	35.82	Glycosyl hydrolase 5 family protein OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1	[more]

BLAST of CsGy5G016260 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C9U1\|A0A1S3C9U1_CUCME	1.9e-60	87.20	uncharacterized protein LOC103498458 OS=Cucumis melo OX=3656 GN=LOC103498458 PE=...	[more]
tr\|A0A1S3CT43\|A0A1S3CT43_CUCME	7.2e-60	87.20	endoglucanase-like OS=Cucumis melo OX=3656 GN=LOC103504654 PE=3 SV=1	[more]
tr\|A0A0A0L6S7\|A0A0A0L6S7_CUCSA	1.4e-58	96.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G185670 PE=3 SV=1	[more]
tr\|A0A0A0KL32\|A0A0A0KL32_CUCSA	2.0e-57	84.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G171770 PE=3 SV=1	[more]
tr\|A0A0A0KNB6\|A0A0A0KNB6_CUCSA	4.4e-57	82.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G171760 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR035992	Ricin_B-like_lectins

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G016260.1	CsGy5G016260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31263:SF10	SUBFAMILY NOT NAMED	coord: 1..127
None	No IPR available	PANTHER	PTHR31263	FAMILY NOT NAMED	coord: 1..127
IPR035992	Ricin B-like lectins	SUPERFAMILY	SSF50370	Ricin B-like lectins	coord: 4..105

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G016260	Silver-seed gourd	carcgybB1045
CsGy5G016260	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G016260	Wax gourd	cgybwgoB449
CsGy5G016260	Cucurbita maxima (Rimu)	cgybcmaB693
CsGy5G016260	Cucurbita moschata (Rifu)	cgybcmoB562
CsGy5G016260	Cucurbita moschata (Rifu)	cgybcmoB673
CsGy5G016260	Cucurbita pepo (Zucchini)	cgybcpeB593
CsGy5G016260	Cucurbita pepo (Zucchini)	cgybcpeB698
CsGy5G016260	Cucumber (Chinese Long) v2	cgybcuB223
CsGy5G016260	Bottle gourd (USVL1VR-Ls)	cgyblsiB318
CsGy5G016260	Melon (DHL92) v3.5.1	cgybmeB300
CsGy5G016260	Melon (DHL92) v3.6.1	cgybmedB300
CsGy5G016260	Wild cucumber (PI 183967)	cgybcpiB225