CsGy5G014730 (gene) Cucumber (Gy14) v2

Overview
NameCsGy5G014730
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionRetrotransposable element Tf2
LocationChr5 : 20453759 .. 20454154 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTACGCCTTCTACAGTGGATAAAAGGTATGACATTGAGAGATTGAAGTCGTTGAGAGCAACGACTTTCAAAGGAACAACTAGTCCAGCTAACGAAAAGAAGTGGCTGAGTTTGGTGGAGAAATGTTTTGGGGTGATGGAGTGCACTAAAGAGAGAAGAGCTAAATTAGCAACATTTCTGTTGCAAAGAGGTGTTGAAGACTGGTGGACTCTTCATGTGGTAAGAGTTAAAGGAATGGGCCTTGTCTCATGGGAGGAGTTTAGAAAAGCATTTCAAAATAAGTTTTATCCTCATTATTTTTGTGATACGAAGAGGAATGAATTTATAATCTTAGTACAAGACGACACAACTGTCGCGGAATACCCGAAGAAATTTACTAAATTGACTAGCTAA

mRNA sequence

ATGCCTACGCCTTCTACAGTGGATAAAAGGTATGACATTGAGAGATTGAAGTCGTTGAGAGCAACGACTTTCAAAGGAACAACTAGTCCAGCTAACGAAAAGAAGTGGCTGAGTTTGGTGGAGAAATGTTTTGGGGTGATGGAGTGCACTAAAGAGAGAAGAGCTAAATTAGCAACATTTCTGTTGCAAAGAGGTGTTGAAGACTGGTGGACTCTTCATGTGGTAAGAGTTAAAGGAATGGGCCTTGTCTCATGGGAGGAGTTTAGAAAAGCATTTCAAAATAAGTTTTATCCTCATTATTTTTGTGATACGAAGAGGAATGAATTTATAATCTTAGTACAAGACGACACAACTGTCGCGGAATACCCGAAGAAATTTACTAAATTGACTAGCTAA

Coding sequence (CDS)

ATGCCTACGCCTTCTACAGTGGATAAAAGGTATGACATTGAGAGATTGAAGTCGTTGAGAGCAACGACTTTCAAAGGAACAACTAGTCCAGCTAACGAAAAGAAGTGGCTGAGTTTGGTGGAGAAATGTTTTGGGGTGATGGAGTGCACTAAAGAGAGAAGAGCTAAATTAGCAACATTTCTGTTGCAAAGAGGTGTTGAAGACTGGTGGACTCTTCATGTGGTAAGAGTTAAAGGAATGGGCCTTGTCTCATGGGAGGAGTTTAGAAAAGCATTTCAAAATAAGTTTTATCCTCATTATTTTTGTGATACGAAGAGGAATGAATTTATAATCTTAGTACAAGACGACACAACTGTCGCGGAATACCCGAAGAAATTTACTAAATTGACTAGCTAA

Protein sequence

MPTPSTVDKRYDIERLKSLRATTFKGTTSPANEKKWLSLVEKCFGVMECTKERRAKLATFLLQRGVEDWWTLHVVRVKGMGLVSWEEFRKAFQNKFYPHYFCDTKRNEFIILVQDDTTVAEYPKKFTKLTS
Homology
[Close]
BLAST of CsGy5G014730 vs. NCBI nr
Match: XP_008448403.1 (PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 1.0e-27
Identity = 59/127 (46.46%), Postives = 84/127 (66.14%), Query Frame = 0 

Query: 4   PSTVDKRYDIERLKSLRATTFKGTTSPANEKKWLSLVEKCFGVMECTKERRAKLATFLLQ 63
           PS  +K Y IERLK L AT F+G+T PAN + WL+++EKCF VM C ++R+ +L TFLLQ
Sbjct: 57  PSDPEKMYGIERLKKLGATVFEGSTDPANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQ 116

Query: 64  RGVEDWWTLHVVRVKGMGLVSWEEFRKAFQNKFYPHYFCDTKRNEFIILVQDDTTVAEYP 123
           +  E WW   + R      + W+ FR  F+ K+YP  +C+ KR+EF  L Q   +VAEY 
Sbjct: 117 KEAEGWWKSIIARRNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFQELKQGSLSVAEYE 176

Query: 124 KKFTKLT 131
           +K+T+L+
Sbjct: 177 RKYTELS 183

[Close]
BLAST of CsGy5G014730 vs. NCBI nr
Match: XP_016901385.1 (PREDICTED: uncharacterized protein LOC107991239 [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 5.2e-27
Identity = 56/120 (46.67%), Postives = 83/120 (69.17%), Query Frame = 0 

Query: 11  YDIERLKSLRATTFKGTTSPANEKKWLSLVEKCFGVMECTKERRAKLATFLLQRGVEDWW 70
           Y IERLK LRAT F+G+T PA+ + WL+++EKCF VM C +ER+ +LATFLLQ+  E WW
Sbjct: 2   YGIERLKKLRATVFEGSTDPADAEVWLNMLEKCFDVMSCPQERKVRLATFLLQKEAEGWW 61

Query: 71  TLHVVRVKGMGLVSWEEFRKAFQNKFYPHYFCDTKRNEFIILVQDDTTVAEYPKKFTKLT 130
              +V+      + W+ FR  F+ K+YP  +C+ KR+EF+ L Q   ++ EY +K+T+L+
Sbjct: 62  KSIIVKRNDACTLDWQTFRGIFEEKYYPTTYCEAKRDEFLELKQGSLSMVEYERKYTELS 121

[Close]
BLAST of CsGy5G014730 vs. NCBI nr
Match: XP_016899851.1 (PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 9.8e-26
Identity = 57/127 (44.88%), Postives = 84/127 (66.14%), Query Frame = 0 

Query: 4   PSTVDKRYDIERLKSLRATTFKGTTSPANEKKWLSLVEKCFGVMECTKERRAKLATFLLQ 63
           PS +DK Y IE+LK L AT F+G+T PA+ + WL+++EKCF VM C +E++ +LATFLLQ
Sbjct: 57  PSDLDKMYGIEQLKKLGATVFQGSTDPADAEVWLNMLEKCFDVMSCPQEQKVRLATFLLQ 116

Query: 64  RGVEDWWTLHVVRVKGMGLVSWEEFRKAFQNKFYPHYFCDTKRNEFIILVQDDTTVAEYP 123
           +  E W    +        + W+ FR  F+ K+YP  +C+ KR+EF+ L Q    VAEY 
Sbjct: 117 KEAEGWLKSIIASRNDARTLYWQTFRGIFEEKYYPTTYCEAKRDEFMELKQGSLLVAEYE 176

Query: 124 KKFTKLT 131
           +K+T+L+
Sbjct: 177 RKYTELS 183

[Close]
BLAST of CsGy5G014730 vs. NCBI nr
Match: XP_008456815.1 (PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-25
Identity = 56/120 (46.67%), Postives = 79/120 (65.83%), Query Frame = 0 

Query: 11  YDIERLKSLRATTFKGTTSPANEKKWLSLVEKCFGVMECTKERRAKLATFLLQRGVEDWW 70
           Y IERLK L AT F+G+T  A+   WL+++EKCF VM C +ER+ +LATFLLQ+  E WW
Sbjct: 2   YGIERLKKLGATVFEGSTDLADADAWLNMLEKCFDVMSCPQERKVRLATFLLQKEAEGWW 61

Query: 71  TLHVVRVKGMGLVSWEEFRKAFQNKFYPHYFCDTKRNEFIILVQDDTTVAEYPKKFTKLT 130
              + R      + W+ FR  F+ K+YP  +C+ KR+EF+ L Q   +VAEY  K+T+L+
Sbjct: 62  KSIIARCNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFLELKQGSLSVAEYEMKYTELS 121

[Close]
BLAST of CsGy5G014730 vs. NCBI nr
Match: XP_016900338.1 (PREDICTED: uncharacterized protein LOC107990863 [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 7.8e-23
Identity = 52/127 (40.94%), Postives = 82/127 (64.57%), Query Frame = 0 

Query: 4   PSTVDKRYDIERLKSLRATTFKGTTSPANEKKWLSLVEKCFGVMECTKERRAKLATFLLQ 63
           PS ++K Y IERLK L A  F+G+  PA+ ++W +++EKCF VM   +E + +LAT LL 
Sbjct: 42  PSDLEKAYGIERLKKLGAIVFEGSIDPADAEEWCNMLEKCFNVMNYPEEWKVRLATSLLL 101

Query: 64  RGVEDWWTLHVVRVKGMGLVSWEEFRKAFQNKFYPHYFCDTKRNEFIILVQDDTTVAEYP 123
              E WW   + R      ++W+ FR   ++K+YP+ +C+ KR+EF+ L Q   +VAEY 
Sbjct: 102 NEAEGWWKSILARCSDACTLNWQTFRGTVKDKYYPNTYCEAKRDEFLGLKQGSLSVAEYE 161

Query: 124 KKFTKLT 131
           +K+T+L+
Sbjct: 162 RKYTELS 168

[Close]
BLAST of CsGy5G014730 vs. TrEMBL
Match: tr|A0A1S3BJ07|A0A1S3BJ07_CUCME (uncharacterized protein LOC103490604 OS=Cucumis melo OX=3656 GN=LOC103490604 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.9e-28
Identity = 59/127 (46.46%), Postives = 84/127 (66.14%), Query Frame = 0 

Query: 4   PSTVDKRYDIERLKSLRATTFKGTTSPANEKKWLSLVEKCFGVMECTKERRAKLATFLLQ 63
           PS  +K Y IERLK L AT F+G+T PAN + WL+++EKCF VM C ++R+ +L TFLLQ
Sbjct: 57  PSDPEKMYGIERLKKLGATVFEGSTDPANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQ 116

Query: 64  RGVEDWWTLHVVRVKGMGLVSWEEFRKAFQNKFYPHYFCDTKRNEFIILVQDDTTVAEYP 123
           +  E WW   + R      + W+ FR  F+ K+YP  +C+ KR+EF  L Q   +VAEY 
Sbjct: 117 KEAEGWWKSIIARRNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFQELKQGSLSVAEYE 176

Query: 124 KKFTKLT 131
           +K+T+L+
Sbjct: 177 RKYTELS 183

[Close]
BLAST of CsGy5G014730 vs. TrEMBL
Match: tr|A0A1S4E079|A0A1S4E079_CUCME (uncharacterized protein LOC107991239 OS=Cucumis melo OX=3656 GN=LOC107991239 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.4e-27
Identity = 56/120 (46.67%), Postives = 83/120 (69.17%), Query Frame = 0 

Query: 11  YDIERLKSLRATTFKGTTSPANEKKWLSLVEKCFGVMECTKERRAKLATFLLQRGVEDWW 70
           Y IERLK LRAT F+G+T PA+ + WL+++EKCF VM C +ER+ +LATFLLQ+  E WW
Sbjct: 2   YGIERLKKLRATVFEGSTDPADAEVWLNMLEKCFDVMSCPQERKVRLATFLLQKEAEGWW 61

Query: 71  TLHVVRVKGMGLVSWEEFRKAFQNKFYPHYFCDTKRNEFIILVQDDTTVAEYPKKFTKLT 130
              +V+      + W+ FR  F+ K+YP  +C+ KR+EF+ L Q   ++ EY +K+T+L+
Sbjct: 62  KSIIVKRNDACTLDWQTFRGIFEEKYYPTTYCEAKRDEFLELKQGSLSMVEYERKYTELS 121

[Close]
BLAST of CsGy5G014730 vs. TrEMBL
Match: tr|A0A1S4DV40|A0A1S4DV40_CUCME (uncharacterized protein LOC103487680 OS=Cucumis melo OX=3656 GN=LOC103487680 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.5e-26
Identity = 57/127 (44.88%), Postives = 84/127 (66.14%), Query Frame = 0 

Query: 4   PSTVDKRYDIERLKSLRATTFKGTTSPANEKKWLSLVEKCFGVMECTKERRAKLATFLLQ 63
           PS +DK Y IE+LK L AT F+G+T PA+ + WL+++EKCF VM C +E++ +LATFLLQ
Sbjct: 57  PSDLDKMYGIEQLKKLGATVFQGSTDPADAEVWLNMLEKCFDVMSCPQEQKVRLATFLLQ 116

Query: 64  RGVEDWWTLHVVRVKGMGLVSWEEFRKAFQNKFYPHYFCDTKRNEFIILVQDDTTVAEYP 123
           +  E W    +        + W+ FR  F+ K+YP  +C+ KR+EF+ L Q    VAEY 
Sbjct: 117 KEAEGWLKSIIASRNDARTLYWQTFRGIFEEKYYPTTYCEAKRDEFMELKQGSLLVAEYE 176

Query: 124 KKFTKLT 131
           +K+T+L+
Sbjct: 177 RKYTELS 183

[Close]
BLAST of CsGy5G014730 vs. TrEMBL
Match: tr|A0A1S3C3Q7|A0A1S3C3Q7_CUCME (uncharacterized protein LOC103496653 OS=Cucumis melo OX=3656 GN=LOC103496653 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.5e-26
Identity = 56/120 (46.67%), Postives = 79/120 (65.83%), Query Frame = 0 

Query: 11  YDIERLKSLRATTFKGTTSPANEKKWLSLVEKCFGVMECTKERRAKLATFLLQRGVEDWW 70
           Y IERLK L AT F+G+T  A+   WL+++EKCF VM C +ER+ +LATFLLQ+  E WW
Sbjct: 2   YGIERLKKLGATVFEGSTDLADADAWLNMLEKCFDVMSCPQERKVRLATFLLQKEAEGWW 61

Query: 71  TLHVVRVKGMGLVSWEEFRKAFQNKFYPHYFCDTKRNEFIILVQDDTTVAEYPKKFTKLT 130
              + R      + W+ FR  F+ K+YP  +C+ KR+EF+ L Q   +VAEY  K+T+L+
Sbjct: 62  KSIIARCNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFLELKQGSLSVAEYEMKYTELS 121

[Close]
BLAST of CsGy5G014730 vs. TrEMBL
Match: tr|A0A1S4DWJ7|A0A1S4DWJ7_CUCME (uncharacterized protein LOC107990863 OS=Cucumis melo OX=3656 GN=LOC107990863 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.1e-23
Identity = 52/127 (40.94%), Postives = 82/127 (64.57%), Query Frame = 0 

Query: 4   PSTVDKRYDIERLKSLRATTFKGTTSPANEKKWLSLVEKCFGVMECTKERRAKLATFLLQ 63
           PS ++K Y IERLK L A  F+G+  PA+ ++W +++EKCF VM   +E + +LAT LL 
Sbjct: 42  PSDLEKAYGIERLKKLGAIVFEGSIDPADAEEWCNMLEKCFNVMNYPEEWKVRLATSLLL 101

Query: 64  RGVEDWWTLHVVRVKGMGLVSWEEFRKAFQNKFYPHYFCDTKRNEFIILVQDDTTVAEYP 123
              E WW   + R      ++W+ FR   ++K+YP+ +C+ KR+EF+ L Q   +VAEY 
Sbjct: 102 NEAEGWWKSILARCSDACTLNWQTFRGTVKDKYYPNTYCEAKRDEFLGLKQGSLSVAEYE 161

Query: 124 KKFTKLT 131
           +K+T+L+
Sbjct: 162 RKYTELS 168

The following BLAST results are available for this feature:
BLAST of CsGy5G014730 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008448403.11.0e-2746.46PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo][more]
XP_016901385.15.2e-2746.67PREDICTED: uncharacterized protein LOC107991239 [Cucumis melo][more]
XP_016899851.19.8e-2644.88PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo][more]
XP_008456815.11.3e-2546.67PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo][more]
XP_016900338.17.8e-2340.94PREDICTED: uncharacterized protein LOC107990863 [Cucumis melo][more]
BLAST of CsGy5G014730 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy5G014730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy5G014730 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BJ07|A0A1S3BJ07_CUCME6.9e-2846.46uncharacterized protein LOC103490604 OS=Cucumis melo OX=3656 GN=LOC103490604 PE=... [more]
tr|A0A1S4E079|A0A1S4E079_CUCME3.4e-2746.67uncharacterized protein LOC107991239 OS=Cucumis melo OX=3656 GN=LOC107991239 PE=... [more]
tr|A0A1S4DV40|A0A1S4DV40_CUCME6.5e-2644.88uncharacterized protein LOC103487680 OS=Cucumis melo OX=3656 GN=LOC103487680 PE=... [more]
tr|A0A1S3C3Q7|A0A1S3C3Q7_CUCME8.5e-2646.67uncharacterized protein LOC103496653 OS=Cucumis melo OX=3656 GN=LOC103496653 PE=... [more]
tr|A0A1S4DWJ7|A0A1S4DWJ7_CUCME5.1e-2340.94uncharacterized protein LOC107990863 OS=Cucumis melo OX=3656 GN=LOC107990863 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G014730.1CsGy5G014730.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 57..130
e-value: 5.1E-8
score: 33.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy5G014730Cucurbita maxima (Rimu)cgybcmaB600
CsGy5G014730Cucurbita maxima (Rimu)cgybcmaB676
CsGy5G014730Cucurbita moschata (Rifu)cgybcmoB574
CsGy5G014730Cucurbita moschata (Rifu)cgybcmoB654
CsGy5G014730Cucurbita pepo (Zucchini)cgybcpeB609
CsGy5G014730Cucurbita pepo (Zucchini)cgybcpeB650
CsGy5G014730Cucumber (Chinese Long) v2cgybcuB223
CsGy5G014730Bottle gourd (USVL1VR-Ls)cgyblsiB302
CsGy5G014730Melon (DHL92) v3.5.1cgybmeB294
CsGy5G014730Melon (DHL92) v3.6.1cgybmedB294
CsGy5G014730Watermelon (Charleston Gray)cgybwcgB349
CsGy5G014730Watermelon (97103) v1cgybwmB357
CsGy5G014730Wild cucumber (PI 183967)cgybcpiB225
CsGy5G014730Silver-seed gourdcarcgybB0533
CsGy5G014730Silver-seed gourdcarcgybB0819
CsGy5G014730Cucumber (Chinese Long) v3cgybcucB232
CsGy5G014730Watermelon (97103) v2cgybwmbB354
CsGy5G014730Wax gourdcgybwgoB428