CsGy5G014700 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G014700
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	condensin complex subunit 3
Location	Chr5 : 20351547 .. 20355541 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCAAACAAAGAACAACAATTTTACAGAGAGGGCTTGCTGATCGTTCTCAAGCTGTTTCAAAGGAGTGCTTAAAATTGATGACAGATGAGTGGCTACACAACTGCTGCCATGGAAATCCTGTAGAATTGCTAGAGTATCTTGATGTCGAAACCTATGAACGAGTTGGTGAGTCTGTTATGGGGGCTTTATTAGGAGCTAGTTTGTTGAAACTGCATGACGATGCAAGTATCCAACATTATATACAAACTTCCAGCAGCGCGACAGAAGGTTAGTGTAGCTTGTCGAATATCCAAATATTTATGGTTTTTGTAATTCTAATTGTAACTTTCCGTGGGTTATCCAAGTTATTAGACTGTATTTGTTAATTATGTTATATTAAATAAACTAGGTAAAATAGTTTTTAATCTTAATTTCCGTACATTATTCTGTGAACTTTAGTAACTCATTTATAGTAGGGTGCATATTGTACCAAATAATTAAATCTATAGTAAATCTAGAATAAATCGAAACTAAATCCAATACACCCCTCAAACTTAGGACGATTGAGGAGTCACAAGTTCGCTCCAACAGTAAGTAAAAAGATAACGTAGAGAGGGCTTTAGTGAATAAATCTGCAATTTGGTCCTGACTCCTGGGAAGTGATGAGATGAACAGAAAGATTCTTCCTTGCAAACTACATTTTCTCAAACAAAATGATAGTCTATCTTAATGTGCTTGGTACAAACATGAAAGACGAGATTACTTGGAATATAGATAAGATAGACATTATCGAACCATAACATAGGAGGACCATGAAGGAAGAGACGGAGATAACATAACAATTGTCGAAGCCAGTGAACAACAGTAAGATTTTGCATGAACTAACTAACACGATCAACAATAGAGAGAATGTCTGGACGATCAACAGTAGTGATGGGCATAGGTGTCAAACAAGACTTCACTTCAAATATTTGGAAAGAATGGAGTAAATTAAGAAGTACGACCGGGATGATTCTAAATGTCAAGCCCAAGAAATAACTTAGATTGCCTAGGTCAAATATTTGAAATTTAGACGAGAAATGGGGCTTCAAATGATGCACATATTCAGAATTAGAACCAACAATGAGAATATCATCAATATAGAGTAGAAGATAAGTGACAATCAAGCTTGGTATATTGTGACAATTAGGATTTTTGTATCCTCCAACCCTTTGTTTTACTAGTGCACAAAGCATGTAGAGATTGATTGTCACTTTGTGCGAGATTTGGTTCCTCATATAGTTTTTTATGCTTGATGCTCATTCATTCAAATGCACAATTGACTGATATGTTCACAGAGGTGCTATCTTCTTCTGCCTTACAACATTGTATGTTGAAGTTGGTTGTTTTAAATCTTCAATAGTCTATCTTGAGGAGGGGTATTAGAGTTAGAGTATACTAGAGTATTTGTTATTTCTGTTATATTGACAGCTGTTCTGAACAATTAGTTATACTAACTTCTCTTGTATTATACTGGACTTGGGTCCTCATTTAATAATAAGAAAAGTATTATTTACTTTCCTCTGTTGTAATGTATGTTAACGAATCTATGCATTGTGACATTTCCTTCCATGTTCTCGCCTATGCCTATCATTTGATAGTTGGAAGGCTCACAAGAATTATTCTTATTCTTATTTCTTATTTGTTGGCTTCATATGCATACATTGGATTTAAAAAGCCCATTACAAATCTGTAGGTAAATATTCCCCATTCGTTTGTCATTGAAGTGTTTGTAGTTGCTGAAGGAATTGCTCTAGTATGTGTTTACAAAATTGAAATTTATTATTCTATAAACGCTAAAATTTCTCTAGTAAATCGAATCCTTCAATAGCTGTCGGATTTATATGCTCATTTAACTTCATGAAATCATCTTATTATCCTTTGAGTTCGGGTCTTACATGTTATGGTAATATGATGGTTCCCACTCTTGTATCTTAGGAGACTCACCACATTGCAGTCCAACTATACAACTGATGGAACCAGAAGTTTCTCTTTACTGGAGGATGATTTGTAAGCATATCCTAACAGAAGCACATGTAAGTATATCTGTTCCATCTCCCGTCATTTTATTCTTGACTCGTGTTTGTGTCAAGACTCCCAAACCTGAAACTCAGAAAAATCTCAACAATAGCACAAAAAGAGGCAGCACTCTGTGGAGATATATTGATATCCAATACATTGTTCAACAAACACCAATAAAAACAACTATAAGCAGATAATAACAGAATACTAAAAGAAAATATCTCAGCTCTTTCGAGAAGGCTTGGAGCTTCTCTCCAAAAGCTATACAGCAGCTTTTAACCTAATCAATACCTAAAAACCCATTCCCCAAAACATTCTCTGTTTATACTCCCTTCAAAGTAGGCCCTTAGGTCTTCTTCTCTCTTGGTATGAGGCATTCCCCATTTTACTCCTTTTCTATGTGTGCAGAATTGGGGGTCTCACAGTTTGTCAATCTAAATTCCCATGAGTACTACTCACTAGTAAATATTGTGTGAATAAAATTATTCTAGAGATTTGTAGGCTACATGGAAACATATTTATGAAATGGGGTTCTGTAAAGATTCAACCCCTAAAGACTAAGGACTGAAAATTGTCAGTAAAATTGGCCTTTACCAGATGTGCTGCTCTATTTTGTGTAGTTGTTCATTTCCTTTCATCATGAGTCAAATAAACCAATGTTTACAGGAGTGCCACGTGATCATTAAGTCATCCTCGCACGGTAGTTGATGTATAGAATCACAATTCAAAATTTTGATATGCTAGTAACTTTTTAAGTTTAAATTTTAATTAATTATAATCATTAAATTTCATAAACTAATTTTTATTTATCCTTCACCTATTCACTAGTTTTAAATTTTTATGTTATCTAATATTGTTATCTTTTATTTGTAATCGCTCTCACACTCAAGTCTCAATACTCTCCTTGGTCAGTTGAATTTTATTGTCAACTCTCTGGTGCATGAACGTAATAAAGTTCCTGAAATTAGTCATCGTGGGATTGAGTTGTCCGGAACATGACAATGTACCAGAACTTATACCAGTTGATACTTGTACATTTTTCTTCTGTAGGCAAAAGGTTCTGATGCTGCAGCTTCTATGGGTGCTGAAGCCGCAGTATATGCAGCCGAAGCTTCTGAAAAAAATGACCTTTTAGAGAAAATTCTTCCTGCCACTATTTCTGATTATGTAGGCTTAGTCAAAGCTCATATTAATGCTGGTACAATTATCTCATAGAACGATAATTTAATATATTGTTTTTTGCCAAGCATGTTATATGACTTTGCCATTACAGGGTCCAGTTATCGATTTGCATCAAGACAGCTACTTTTGCTTGGAACCATGCTTGATTATTCTGATAATGCAAATAGGAAGATTGCTGGTGCATTTCTGCAGGAAGTGTTGCATATATCTCCAGATCATGAATTGGATGATGATGGGAACTTGGTTGTTCATGGAGATGGAATCAATCTTGGAGGAGATAGAGATTGGGCAATTTCTGTATCTGGGTTGGTTAGGAAAGTCCATGCTGCAGCTGGTGAATTTGAAGAAATTGTTCTTGAGGTGATTGAAGAACTTGCTCGACCATGCAGGGAAAGAACTGCAAATTGTGTGCAGTGGATGCACTGTCTTGCTGTGACAAGCCTTCTCCTGGAAAACGCTAAGTCATTGAATTTTATTAATGGAAAAATCTCTGGACCTGCTGAACTGCTGGATTCAATATTGCTTCCAGGGGTAAGAGAACATTTTGTAGGATAGCTGTTTGATCAACTGTTCTAGCACATTGTGACTTTGGACCATGGTTGCCTATTCATGCATATACTTAGCTGCTTCGAAATTGATCCTATCAAACAATTGTATCTGCCAATACCCTCTAAAACAATAGCTGATACTGCAACTTTGAACCATATTGGTCAGGATATGCATTGCTTTGTGTGTATGCTTAAATCATTAGATTGGCCTGACATCGAAATA

mRNA sequence

CATCAAACAAAGAACAACAATTTTACAGAGAGGGCTTGCTGATCGTTCTCAAGCTGTTTCAAAGGAGTGCTTAAAATTGATGACAGATGAGTGGCTACACAACTGCTGCCATGGAAATCCTGTAGAATTGCTAGAGTATCTTGATGTCGAAACCTATGAACGAGTTGGTGAGTCTGTTATGGGGGCTTTATTAGGAGCTAGTTTGTTGAAACTGCATGACGATGCAAGTATCCAACATTATATACAAACTTCCAGCAGCGCGACAGAAGGGTGCATATTGTACCAAATAATTAAATCTATAAATAAATCGAAACTAAATCCAATACACCCCTCAAACTTAGGACGATTGAGGAGTCACAAGTTCGCTCCAACAGTAAATATTCCCCATTCGTTTGTCATTGAAGTGTTTGTAGTTGCTGAAGGAATTGCTCTAGCAAAAGGTTCTGATGCTGCAGCTTCTATGGGTGCTGAAGCCGCAGTATATGCAGCCGAAGCTTCTGAAAAAAATGACCTTTTAGAGAAAATTCTTCCTGCCACTATTTCTGATTATGTAGGCTTAGTCAAAGCTCATATTAATGCTGGGTCCAGTTATCGATTTGCATCAAGACAGCTACTTTTGCTTGGAACCATGCTTGATTATTCTGATAATGCAAATAGGAAGATTGCTGGTGCATTTCTGCAGGAAGTGTTGCATATATCTCCAGATCATGAATTGGATGATGATGGGAACTTGGTTGTTCATGGAGATGGAATCAATCTTGGAGGAGATAGAGATTGGGCAATTTCTGTATCTGGGTTGGTTAGGAAAGTCCATGCTGCAGCTGGTGAATTTGAAGAAATTGTTCTTGAGGTGATTGAAGAACTTGCTCGACCATGCAGGGAAAGAACTGCAAATTGTGTGCAGTGGATGCACTGTCTTGCTGTGACAAGCCTTCTCCTGGAAAACGCTAAGTCATTGAATTTTATTAATGGAAAAATCTCTGGACCTGCTGAACTGCTGGATTCAATATTGCTTCCAGGGCACATTGTGACTTTGGACCATGGTTGCCTATTCATGCATATACTTAGCTGCTTCGAAATTGATCCTATCAAACAATTGTATCTGCCAATACCCTCTAAAACAATAGCTGATACTGCAACTTTGAACCATATTGGTCAGGATATGCATTGCTTTGTGTGTATGCTTAAATCATTAGATTGGCCTGACATCGAAATA

Coding sequence (CDS)

ATGACAGATGAGTGGCTACACAACTGCTGCCATGGAAATCCTGTAGAATTGCTAGAGTATCTTGATGTCGAAACCTATGAACGAGTTGGTGAGTCTGTTATGGGGGCTTTATTAGGAGCTAGTTTGTTGAAACTGCATGACGATGCAAGTATCCAACATTATATACAAACTTCCAGCAGCGCGACAGAAGGGTGCATATTGTACCAAATAATTAAATCTATAAATAAATCGAAACTAAATCCAATACACCCCTCAAACTTAGGACGATTGAGGAGTCACAAGTTCGCTCCAACAGTAAATATTCCCCATTCGTTTGTCATTGAAGTGTTTGTAGTTGCTGAAGGAATTGCTCTAGCAAAAGGTTCTGATGCTGCAGCTTCTATGGGTGCTGAAGCCGCAGTATATGCAGCCGAAGCTTCTGAAAAAAATGACCTTTTAGAGAAAATTCTTCCTGCCACTATTTCTGATTATGTAGGCTTAGTCAAAGCTCATATTAATGCTGGGTCCAGTTATCGATTTGCATCAAGACAGCTACTTTTGCTTGGAACCATGCTTGATTATTCTGATAATGCAAATAGGAAGATTGCTGGTGCATTTCTGCAGGAAGTGTTGCATATATCTCCAGATCATGAATTGGATGATGATGGGAACTTGGTTGTTCATGGAGATGGAATCAATCTTGGAGGAGATAGAGATTGGGCAATTTCTGTATCTGGGTTGGTTAGGAAAGTCCATGCTGCAGCTGGTGAATTTGAAGAAATTGTTCTTGAGGTGATTGAAGAACTTGCTCGACCATGCAGGGAAAGAACTGCAAATTGTGTGCAGTGGATGCACTGTCTTGCTGTGACAAGCCTTCTCCTGGAAAACGCTAAGTCATTGAATTTTATTAATGGAAAAATCTCTGGACCTGCTGAACTGCTGGATTCAATATTGCTTCCAGGGCACATTGTGACTTTGGACCATGGTTGCCTATTCATGCATATACTTAGCTGCTTCGAAATTGATCCTATCAAACAATTGTATCTGCCAATACCCTCTAAAACAATAGCTGATACTGCAACTTTGAACCATATTGGTCAGGATATGCATTGCTTTGTGTGTATGCTTAAATCATTAGATTGGCCTGACATCGAAATA

Protein sequence

MTDEWLHNCCHGNPVELLEYLDVETYERVGESVMGALLGASLLKLHDDASIQHYIQTSSSATEGCILYQIIKSINKSKLNPIHPSNLGRLRSHKFAPTVNIPHSFVIEVFVVAEGIALAKGSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLLLLGTMLDYSDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAISVSGLVRKVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFINGKISGPAELLDSILLPGHIVTLDHGCLFMHILSCFEIDPIKQLYLPIPSKTIADTATLNHIGQDMHCFVCMLKSLDWPDIEI

Homology

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BLAST of CsGy5G014700 vs. NCBI nr
Match: KGN51035.1 (hypothetical protein Csa_5G412250 [Cucumis sativus])

HSP 1 Score: 499.2 bits (1284), Expect = 1.2e-137
Identity = 267/314 (85.03%), Postives = 275/314 (87.58%), Query Frame = 0


Query: 1   MTDEWLHNCCHGNPVELLEYLDVETYERVGESVMGALLGASLLKLHDDASIQHYIQTSSS 60
           MTDEWLHNCCHGNPVELLEYLDVETYERVGESVMGALLGASLLKLHDDASIQHYIQTSSS
Sbjct: 39  MTDEWLHNCCHGNPVELLEYLDVETYERVGESVMGALLGASLLKLHDDASIQHYIQTSSS 98

Query: 61  ATEGCILYQIIKSINKSKLNPIHPSNLGRLRSHKFAPTVNIPHSFVIEVFVVAEGIALAK 120
           ATEG               +  H S   +L      P V++    + +  ++ E  A AK
Sbjct: 99  ATEG---------------DSPHCSPTIQL----MEPEVSLYWRMICK-HILTE--AHAK 158

Query: 121 GSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLLL 180
           GSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLLL
Sbjct: 159 GSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLLL 218

Query: 181 LGTMLDYSDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAISVSGL 240
           LGTMLDYSDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAISVSGL
Sbjct: 219 LGTMLDYSDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAISVSGL 278

Query: 241 VRKVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFINGKI 300
           VRKVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFINGKI
Sbjct: 279 VRKVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFINGKI 330

Query: 301 SGPAELLDSILLPG 315
           SGPAELLDSILLPG
Sbjct: 339 SGPAELLDSILLPG 330

[Close]

BLAST of CsGy5G014700 vs. NCBI nr
Match: XP_011655227.1 (PREDICTED: condensin complex subunit 3 [Cucumis sativus])

HSP 1 Score: 499.2 bits (1284), Expect = 1.2e-137
Identity = 267/314 (85.03%), Postives = 275/314 (87.58%), Query Frame = 0


Query: 1   MTDEWLHNCCHGNPVELLEYLDVETYERVGESVMGALLGASLLKLHDDASIQHYIQTSSS 60
           MTDEWLHNCCHGNPVELLEYLDVETYERVGESVMGALLGASLLKLHDDASIQHYIQTSSS
Sbjct: 279 MTDEWLHNCCHGNPVELLEYLDVETYERVGESVMGALLGASLLKLHDDASIQHYIQTSSS 338

Query: 61  ATEGCILYQIIKSINKSKLNPIHPSNLGRLRSHKFAPTVNIPHSFVIEVFVVAEGIALAK 120
           ATEG               +  H S   +L      P V++    + +  ++ E  A AK
Sbjct: 339 ATEG---------------DSPHCSPTIQL----MEPEVSLYWRMICK-HILTE--AHAK 398

Query: 121 GSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLLL 180
           GSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLLL
Sbjct: 399 GSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLLL 458

Query: 181 LGTMLDYSDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAISVSGL 240
           LGTMLDYSDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAISVSGL
Sbjct: 459 LGTMLDYSDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAISVSGL 518

Query: 241 VRKVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFINGKI 300
           VRKVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFINGKI
Sbjct: 519 VRKVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFINGKI 570

Query: 301 SGPAELLDSILLPG 315
           SGPAELLDSILLPG
Sbjct: 579 SGPAELLDSILLPG 570

[Close]

BLAST of CsGy5G014700 vs. NCBI nr
Match: XP_008460507.1 (PREDICTED: condensin complex subunit 3 [Cucumis melo])

HSP 1 Score: 482.3 bits (1240), Expect = 1.6e-132
Identity = 257/314 (81.85%), Postives = 273/314 (86.94%), Query Frame = 0


Query: 1   MTDEWLHNCCHGNPVELLEYLDVETYERVGESVMGALLGASLLKLHDDASIQHYIQTSSS 60
           MTDEWL+NCCHGNP+ELLEYLDVETYERVGESVMGALLGASLLKLHD+ASIQHYI TSSS
Sbjct: 278 MTDEWLNNCCHGNPIELLEYLDVETYERVGESVMGALLGASLLKLHDNASIQHYILTSSS 337

Query: 61  ATEGCILYQIIKSINKSKLNPIHPSNLGRLRSHKFAPTVNIPHSFVIEVFVVAEGIALAK 120
           ATEG               +  H S   +L      P V++    + +  ++ E  A AK
Sbjct: 338 ATEG---------------DSPHCSPTIQL----MEPEVSLYWRTICK-HILTE--AHAK 397

Query: 121 GSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLLL 180
           GSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLLL
Sbjct: 398 GSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLLL 457

Query: 181 LGTMLDYSDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAISVSGL 240
           LGTMLD+SDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAI+VSGL
Sbjct: 458 LGTMLDFSDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAIAVSGL 517

Query: 241 VRKVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFINGKI 300
           V+KVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFING I
Sbjct: 518 VKKVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFINGNI 569

Query: 301 SGPAELLDSILLPG 315
           SGPA+LL+SILLPG
Sbjct: 578 SGPAQLLESILLPG 569

[Close]

BLAST of CsGy5G014700 vs. NCBI nr
Match: XP_022993733.1 (condensin complex subunit 3-like [Cucurbita maxima])

HSP 1 Score: 445.7 bits (1145), Expect = 1.6e-121
Identity = 239/314 (76.11%), Postives = 262/314 (83.44%), Query Frame = 0


Query: 1   MTDEWLHNCCHGNPVELLEYLDVETYERVGESVMGALLGASLLKLHDDASIQHYIQTSSS 60
           M DEWL+ CC+GNPVELLE LDVETYERVGESVMGALLGASLLKLH + SIQ+YI TSS+
Sbjct: 278 MIDEWLNKCCNGNPVELLECLDVETYERVGESVMGALLGASLLKLHVNGSIQNYILTSSN 337

Query: 61  ATEGCILYQIIKSINKSKLNPIHPSNLGRLRSHKFAPTVNIPHSFVIEVFVVAEGIALAK 120
           ATEG  L+               PS           P V++    + +  ++ E  A AK
Sbjct: 338 ATEGDSLHST-------------PS------IQLMEPEVSLYWRTICK-HILTE--AHAK 397

Query: 121 GSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLLL 180
           GSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLLL
Sbjct: 398 GSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLLL 457

Query: 181 LGTMLDYSDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAISVSGL 240
           LGTMLD+SD  NRKIAGAFLQEVLH+ PDHE+DDDGNLVV GDGINLGGDRDWA++VSGL
Sbjct: 458 LGTMLDFSDATNRKIAGAFLQEVLHMPPDHEVDDDGNLVVLGDGINLGGDRDWAVAVSGL 517

Query: 241 VRKVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFINGKI 300
            +KVH+AAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLEN KSLNFINGK+
Sbjct: 518 GKKVHSAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENGKSLNFINGKV 569

Query: 301 SGPAELLDSILLPG 315
           +GPA+LL+SILLPG
Sbjct: 578 TGPAQLLESILLPG 569

[Close]

BLAST of CsGy5G014700 vs. NCBI nr
Match: XP_023534151.1 (condensin complex subunit 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 445.3 bits (1144), Expect = 2.1e-121
Identity = 236/315 (74.92%), Postives = 262/315 (83.17%), Query Frame = 0


Query: 1   MTDEWLHNCCHGNPVELLEYLDVETYERVGESVMGALLGASLLKLHDDASIQHYIQTSSS 60
           M+DEWL+ CCHGNPVELL+YLDVETYERVGESVMGALLG  LLKLH D SIQHYI TSSS
Sbjct: 278 MSDEWLNKCCHGNPVELLKYLDVETYERVGESVMGALLGVRLLKLHGDESIQHYILTSSS 337

Query: 61  ATEGCILYQIIKSINKSKLNPIHPSNLGRLRSHKFAPTVNIPHSFVIE-VFVVAEGIALA 120
             EG               + +H ++  +L      P V++    + + +   A+G    
Sbjct: 338 GIEG---------------DSLHCTSSIQL----MEPEVSLYWRTICKHIHTEAQG---- 397

Query: 121 KGSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLL 180
           KGSDAAASMGAEAAVYAAEAS++NDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLL
Sbjct: 398 KGSDAAASMGAEAAVYAAEASDRNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLL 457

Query: 181 LLGTMLDYSDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAISVSG 240
           LLGTMLD+SD ANRK+AGAFLQEVLH+ PDHE+DDDGNLVV GDGINLGGDRDWAI+VSG
Sbjct: 458 LLGTMLDFSDAANRKVAGAFLQEVLHMLPDHEVDDDGNLVVLGDGINLGGDRDWAIAVSG 517

Query: 241 LVRKVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFINGK 300
           LV+KVHAAAGEFEEIVLEV+EELARPCRERTANC+QWMHCLAVTSLLLENAKSLNFINGK
Sbjct: 518 LVKKVHAAAGEFEEIVLEVVEELARPCRERTANCMQWMHCLAVTSLLLENAKSLNFINGK 569

Query: 301 ISGPAELLDSILLPG 315
             G A+LL+SILLPG
Sbjct: 578 DRGLAQLLESILLPG 569

[Close]

BLAST of CsGy5G014700 vs. TAIR10
Match: AT5G37630.1 (ARM repeat superfamily protein)

HSP 1 Score: 305.1 bits (780), Expect = 6.2e-83
Identity = 166/318 (52.20%), Postives = 211/318 (66.35%), Query Frame = 0


Query: 1   MTDEWLHNCCHGNPVELLEYLDVETYERVGESVMGALLGASLLKLHDDASIQHYIQTSSS 60
           M ++WL N C G+P+  L+YLDVETYE V ES +  LL   L+   DD SIQ YI ++  
Sbjct: 287 MKEQWLANYCEGDPITFLKYLDVETYESVAESALEVLLSEGLIMPSDDKSIQQYILSADG 346

Query: 61  ATEGCILYQIIKSINKSKLNPIHPSNLGRLRSHKFAPTVNIPHSFVIEVFVV----AEGI 120
            T                          R  S   AP++ +    +   + +        
Sbjct: 347 ET--------------------------RDESTCSAPSIQLMEPEIALYWRIICRKVHQS 406

Query: 121 ALAKGSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASR 180
           A AKGSDAA +MGAEAAVYAAEAS+ NDLLE+ILPAT+SDYV LVKAHI AG ++ FASR
Sbjct: 407 AQAKGSDAATAMGAEAAVYAAEASDANDLLERILPATVSDYVDLVKAHIEAGPNHHFASR 466

Query: 181 QLLLLGTMLDYSDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAIS 240
           QLLLLGTMLD+SD    K   +F+QE+L    + ELD+DGN +V GDGINLGGD+DWA +
Sbjct: 467 QLLLLGTMLDFSDAMLHKTVSSFVQELLRRPFEQELDEDGNSIVIGDGINLGGDKDWAEA 526

Query: 241 VSGLVRKVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFI 300
           VS L +KVHAA GE+EE++L V+EE+ARPCRERTA+ +QWMH L++TSLLLEN KSL+ +
Sbjct: 527 VSKLAKKVHAAPGEYEEVILVVVEEVARPCRERTADFLQWMHMLSLTSLLLENGKSLHSL 578

Query: 301 NGKISGPAELLDSILLPG 315
            GK   P E+L ++LLPG
Sbjct: 587 QGKAIEPEEILHALLLPG 578

[Close]

BLAST of CsGy5G014700 vs. TrEMBL
Match: tr|A0A0A0KN50|A0A0A0KN50_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G412250 PE=4 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 8.1e-138
Identity = 267/314 (85.03%), Postives = 275/314 (87.58%), Query Frame = 0


Query: 1   MTDEWLHNCCHGNPVELLEYLDVETYERVGESVMGALLGASLLKLHDDASIQHYIQTSSS 60
           MTDEWLHNCCHGNPVELLEYLDVETYERVGESVMGALLGASLLKLHDDASIQHYIQTSSS
Sbjct: 39  MTDEWLHNCCHGNPVELLEYLDVETYERVGESVMGALLGASLLKLHDDASIQHYIQTSSS 98

Query: 61  ATEGCILYQIIKSINKSKLNPIHPSNLGRLRSHKFAPTVNIPHSFVIEVFVVAEGIALAK 120
           ATEG               +  H S   +L      P V++    + +  ++ E  A AK
Sbjct: 99  ATEG---------------DSPHCSPTIQL----MEPEVSLYWRMICK-HILTE--AHAK 158

Query: 121 GSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLLL 180
           GSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLLL
Sbjct: 159 GSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLLL 218

Query: 181 LGTMLDYSDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAISVSGL 240
           LGTMLDYSDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAISVSGL
Sbjct: 219 LGTMLDYSDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAISVSGL 278

Query: 241 VRKVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFINGKI 300
           VRKVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFINGKI
Sbjct: 279 VRKVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFINGKI 330

Query: 301 SGPAELLDSILLPG 315
           SGPAELLDSILLPG
Sbjct: 339 SGPAELLDSILLPG 330

[Close]

BLAST of CsGy5G014700 vs. TrEMBL
Match: tr|A0A1S3CDV9|A0A1S3CDV9_CUCME (condensin complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103499307 PE=4 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 1.0e-132
Identity = 257/314 (81.85%), Postives = 273/314 (86.94%), Query Frame = 0


Query: 1   MTDEWLHNCCHGNPVELLEYLDVETYERVGESVMGALLGASLLKLHDDASIQHYIQTSSS 60
           MTDEWL+NCCHGNP+ELLEYLDVETYERVGESVMGALLGASLLKLHD+ASIQHYI TSSS
Sbjct: 278 MTDEWLNNCCHGNPIELLEYLDVETYERVGESVMGALLGASLLKLHDNASIQHYILTSSS 337

Query: 61  ATEGCILYQIIKSINKSKLNPIHPSNLGRLRSHKFAPTVNIPHSFVIEVFVVAEGIALAK 120
           ATEG               +  H S   +L      P V++    + +  ++ E  A AK
Sbjct: 338 ATEG---------------DSPHCSPTIQL----MEPEVSLYWRTICK-HILTE--AHAK 397

Query: 121 GSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLLL 180
           GSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLLL
Sbjct: 398 GSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLLL 457

Query: 181 LGTMLDYSDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAISVSGL 240
           LGTMLD+SDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAI+VSGL
Sbjct: 458 LGTMLDFSDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAIAVSGL 517

Query: 241 VRKVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFINGKI 300
           V+KVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFING I
Sbjct: 518 VKKVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFINGNI 569

Query: 301 SGPAELLDSILLPG 315
           SGPA+LL+SILLPG
Sbjct: 578 SGPAQLLESILLPG 569

[Close]

BLAST of CsGy5G014700 vs. TrEMBL
Match: tr|A0A2N9ES34|A0A2N9ES34_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5540 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 1.0e-95
Identity = 194/314 (61.78%), Postives = 230/314 (73.25%), Query Frame = 0


Query: 1   MTDEWLHNCCHGNPVELLEYLDVETYERVGESVMGALLGASLLKLHDDASIQHYIQTSSS 60
           M DEWL  CC+G+PVELL+YLDVETYE VGESVMGALL A L+ L D  SIQ YI ++  
Sbjct: 259 MKDEWLIKCCNGDPVELLKYLDVETYELVGESVMGALLKAGLVNLRDSESIQQYISSTDE 318

Query: 61  ATEGCILYQIIKSINKSKLNPIHPSNLGRLRSHKFAPTVNIPHSFVIEVFVVAEGIALAK 120
            TEG               N +H S   +L   + A        +   V    +  A AK
Sbjct: 319 KTEG---------------NSVHCSPSIQLMEAEVA-------LYWRTVCRHLQNEAQAK 378

Query: 121 GSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASRQLLL 180
           GSDAAA+MG EAAVYAAEAS+ NDLLE+ILPAT+SDY+ LVKAHI+AGS+YRFASRQLLL
Sbjct: 379 GSDAAATMGTEAAVYAAEASDNNDLLERILPATVSDYIDLVKAHIDAGSNYRFASRQLLL 438

Query: 181 LGTMLDYSDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAISVSGL 240
           LG MLD+SD  NRK+A AF+QE+LH   DHE+DDDGN+VV GDGINLGGDR+WA +VSGL
Sbjct: 439 LGAMLDFSDATNRKVASAFVQELLHKPLDHEVDDDGNMVVIGDGINLGGDREWADAVSGL 498

Query: 241 VRKVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFINGKI 300
            +KVHAA GEFE+IVL V+EELAR CRERTA+ +QWMH LAVT LLLEN+KS  ++ G+ 
Sbjct: 499 AKKVHAANGEFEQIVLGVVEELARSCRERTADFMQWMHSLAVTGLLLENSKSFRWLQGQA 550

Query: 301 SGPAELLDSILLPG 315
             P ELL S+LLPG
Sbjct: 559 IEPFELLQSLLLPG 550

[Close]

BLAST of CsGy5G014700 vs. TrEMBL
Match: tr|A0A2P5EU60|A0A2P5EU60_9ROSA (Condensin complex subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_151630 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.2e-91
Identity = 186/317 (58.68%), Postives = 221/317 (69.72%), Query Frame = 0


Query: 1   MTDEWLHNCCHGNPVELLEYLDVETYERVGESVMGALLGASLLKLHDDASIQHYIQTSSS 60
           M DEWL  CC+GNPVE L+YLDVETYE VGESVM ALL A L++LHD  SI+  I +   
Sbjct: 267 MKDEWLAKCCNGNPVEFLKYLDVETYEVVGESVMRALLEAGLIELHDCESIRQNISSHGE 326

Query: 61  ATEGCILYQIIKSINKSKLNPIHPSNLGRLRSHKFAPTVNIPHS----FVIEVFVVAEGI 120
             E                            +  F  ++ +  +    +   V    +  
Sbjct: 327 TNED---------------------------TEHFTSSIQLMEAEDALYCKMVCRHLQSE 386

Query: 121 ALAKGSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASR 180
           A AKGSDAAA+MG EAAVYA EAS+ NDLLE+ILPAT+SDY+ LVKAH+NAG ++RFASR
Sbjct: 387 AQAKGSDAAATMGTEAAVYAEEASKNNDLLERILPATVSDYIELVKAHMNAGPNHRFASR 446

Query: 181 QLLLLGTMLDYSDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAIS 240
           QL+LLG MLD+SD  N K+A  F+ E+LH   DHE+DDDGN+VV GDGINLGGDRDWA +
Sbjct: 447 QLVLLGAMLDFSDATNWKVASEFVMELLHKPFDHEVDDDGNMVVLGDGINLGGDRDWADA 506

Query: 241 VSGLVRKVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFI 300
           VSGL RKVHAAAGEFEE+VL VIEELA+PCRERTAN +QWMHCLAV  LLLENAKS+ +I
Sbjct: 507 VSGLARKVHAAAGEFEEVVLRVIEELAQPCRERTANYMQWMHCLAVVGLLLENAKSMRWI 556

Query: 301 NGKISGPAELLDSILLP 314
            GK   P ELL S+LLP
Sbjct: 567 QGKAIEPTELLQSLLLP 556

[Close]

BLAST of CsGy5G014700 vs. TrEMBL
Match: tr|A0A2P5AI55|A0A2P5AI55_PARAD (Condensin complex subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_330180 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.2e-91
Identity = 187/317 (58.99%), Postives = 221/317 (69.72%), Query Frame = 0


Query: 1   MTDEWLHNCCHGNPVELLEYLDVETYERVGESVMGALLGASLLKLHDDASIQHYIQTSSS 60
           M DEWL  CC GNPVE L+YLDVETYE VGESVM ALL A L++LHD  SI+  I + S 
Sbjct: 267 MKDEWLAKCCDGNPVEFLKYLDVETYELVGESVMRALLEAGLIELHDCESIRLNISSHSE 326

Query: 61  ATEGCILYQIIKSINKSKLNPIHPSNLGRLRSHKFAPTVNIPHS----FVIEVFVVAEGI 120
           A E                            +  F P++ +  +    +   V    +  
Sbjct: 327 ANED---------------------------TEHFTPSIQLMEAEDAFYWKMVCRHLQSE 386

Query: 121 ALAKGSDAAASMGAEAAVYAAEASEKNDLLEKILPATISDYVGLVKAHINAGSSYRFASR 180
           A AKGSDAAA+MG EAAVYA EAS+ NDLLE+ILPAT+SDY+ LVKAH+NAG +Y+FASR
Sbjct: 387 AQAKGSDAAATMGTEAAVYAEEASKYNDLLERILPATVSDYIELVKAHMNAGPNYQFASR 446

Query: 181 QLLLLGTMLDYSDNANRKIAGAFLQEVLHISPDHELDDDGNLVVHGDGINLGGDRDWAIS 240
           QL+LLG MLD+SD  N K+A  F+ E+LH   DHE DDDGN+VV GDGINLGGDRDWA +
Sbjct: 447 QLVLLGAMLDFSDATNWKVASEFVMELLHKPFDHEADDDGNMVVLGDGINLGGDRDWADA 506

Query: 241 VSGLVRKVHAAAGEFEEIVLEVIEELARPCRERTANCVQWMHCLAVTSLLLENAKSLNFI 300
           VSGL RKVHAA GEFEE+VL VIEELA+PC+ERTAN +QWMHCLAV  LLLENAKS+ +I
Sbjct: 507 VSGLARKVHAATGEFEEVVLRVIEELAQPCKERTANYMQWMHCLAVVGLLLENAKSMRWI 556

Query: 301 NGKISGPAELLDSILLP 314
            GK   P ELL S+LLP
Sbjct: 567 QGKAIEPTELLQSLLLP 556

The following BLAST results are available for this feature:

BLAST of CsGy5G014700 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51035.1	1.2e-137	85.03	hypothetical protein Csa_5G412250 [Cucumis sativus]	[more]
XP_011655227.1	1.2e-137	85.03	PREDICTED: condensin complex subunit 3 [Cucumis sativus]	[more]
XP_008460507.1	1.6e-132	81.85	PREDICTED: condensin complex subunit 3 [Cucumis melo]	[more]
XP_022993733.1	1.6e-121	76.11	condensin complex subunit 3-like [Cucurbita maxima]	[more]
XP_023534151.1	2.1e-121	74.92	condensin complex subunit 3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy5G014700 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G37630.1	6.2e-83	52.20	ARM repeat superfamily protein	[more]

BLAST of CsGy5G014700 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G014700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KN50\|A0A0A0KN50_CUCSA	8.1e-138	85.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G412250 PE=4 SV=1	[more]
tr\|A0A1S3CDV9\|A0A1S3CDV9_CUCME	1.0e-132	81.85	condensin complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103499307 PE=4 SV=1	[more]
tr\|A0A2N9ES34\|A0A2N9ES34_FAGSY	1.0e-95	61.78	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5540 PE=4 SV=1	[more]
tr\|A0A2P5EU60\|A0A2P5EU60_9ROSA	1.2e-91	58.68	Condensin complex subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_151630 PE=4...	[more]
tr\|A0A2P5AI55\|A0A2P5AI55_PARAD	1.2e-91	58.99	Condensin complex subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_330180 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007076	mitotic chromosome condensation

Vocabulary: **Cellular Component**
Term	Definition
GO:0000796	condensin complex

Vocabulary: **INTERPRO**
Term	Definition
IPR027165	CND3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007076	mitotic chromosome condensation
cellular_component	GO:0000796	condensin complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G014700.1	CsGy5G014700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027165	Condensin complex subunit 3	PANTHER	PTHR14418	CONDENSIN COMPLEX SUBUNIT 3-RELATED	coord: 1..314
None	No IPR available	PANTHER	PTHR14418:SF5	CONDENSIN COMPLEX SUBUNIT 3	coord: 1..314

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G014700	Csa5G412250	Cucumber (Chinese Long) v2	cgybcuB223
CsGy5G014700	MELO3C022831	Melon (DHL92) v3.5.1	cgybmeB294
CsGy5G014700	CSPI05G14820	Wild cucumber (PI 183967)	cgybcpiB225

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G014700	Cucurbita maxima (Rimu)	cgybcmaB600
CsGy5G014700	Cucurbita maxima (Rimu)	cgybcmaB676
CsGy5G014700	Cucurbita moschata (Rifu)	cgybcmoB574
CsGy5G014700	Cucurbita moschata (Rifu)	cgybcmoB654
CsGy5G014700	Cucurbita pepo (Zucchini)	cgybcpeB609
CsGy5G014700	Cucurbita pepo (Zucchini)	cgybcpeB650
CsGy5G014700	Bottle gourd (USVL1VR-Ls)	cgyblsiB302
CsGy5G014700	Melon (DHL92) v3.6.1	cgybmedB294
CsGy5G014700	Watermelon (Charleston Gray)	cgybwcgB349
CsGy5G014700	Watermelon (97103) v1	cgybwmB357
CsGy5G014700	Silver-seed gourd	carcgybB0533
CsGy5G014700	Silver-seed gourd	carcgybB0819
CsGy5G014700	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G014700	Watermelon (97103) v2	cgybwmbB354
CsGy5G014700	Wax gourd	cgybwgoB428