CsGy5G014520 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G014520
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Unknown Protein
Location	Chr5 : 19995132 .. 19997522 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCTAGGTTTTCATCGCGCCATTGTCCTTGGATTTCTCACATAGCAGCAAGTTGTCCAATGATTCCTCGTAAGCGCAAAAGAGTTCTAACTACCTTAAGGTTATAAATTGATAGAGACATGTGGTAAAGAGAGTAGTACATAAAAGATATGGTTAAAATAATTTCGTAAAATGATAAAGAAGATGAAAAACAATTCAATCCACTAGAAGAAAACCTGTCTACTATGACAGTTATATATCTCAAAAAATGAATGAGAAAAAAAAAACTGTCACAAAATAGAAAATTTCGCGTTTTTGGCGGGAAAAGACGGAATTTTTCGGAAAACACTTTTCGCGACAGTTATTTAATGTCATAGAATGTTAGGGTTAAAAATTTATTATTTTATATTTAAAAAATTAAATTTACATATTTATATTTTAAAAAAACCCAAATTCCCCAAATTTTCCCCAAATTCTTCCTCCCATCCGCGTGCCCTAACTTTCCCCCAAATTTCCCCCAATTTCTTCCTCCCATCCGCGTGAAGTCCCGTCGGCTTTCTCCCAATTCTGACCGTCTGAAGTCCCGTCGCCACCACCACCCCTCCTGCCCGTCCGTCGAAACCTTCTCCACCAACCCGTCGCCACCACCCCGTTTTCTCCAAACCTCTCCAATCAACCCGAAGCTTCAAATCGTGGGCGTCGGTCGTCACCCCTCCCCTCCGCCGGTAAGCTTCTCTTCCTTATCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTATGAAGTTCTTCGTTGTCTCCATTGGATTGTTTCGTGAGTTTCAGTTTATCCCAATTTCATTGGATTGTTTCGCCGGTAAGATCTTATCCTCATTTCCAAAAGAGATGTCATGGCTAGTGCCGATTTCTTTGCAATCTTTAAAATTATTTTCTTTGTTTTCAAGAATTTGTGTAGGTTGGTGATGAAACATTTTGGTAGCTTACAATGTGTTTGATGAAATGCCTCAATGAAGCATTTGGTTGATTTTTGATTGATTTTTGTTCGTTCGAATTAGGAAAGTTTCATTATTTCTATTGTTTGTACTTGTATAGTAATATGTGGTTGTGACATTGCTTTTTTTTTTTTTTCCTGTTTCTTTTGTATTACTCTATTTTACAGCAAGCTAATTTTAAAGGTGTCAAGTGTATTTTGATGTATTTTGATTTTGGGGAAGAATTCAGATGACAAAAGCATCAAGAAGTCGATCGTCGGTCTGGAAAGTTAGTGATAAACATCCAGGTTGATTGTTACAATATAAATCTCTTATTTGTTAATGTCTTTTCCTTATCTTATCCATCCTCTTTCACATATCTTGCTAATTTCATAAGCTAACATTGATTGCGATAGACTATAATGCTAGTGATTCAGATTCAGATGAATTGACTCGTGATTCTAACCACACCAGTGTTGTTGATTTCTCTATGTCATGTCAAAACAACCACTTGTATCTCCTCCACGACATGTCGTTTTAGAAATTTAATTAACTTGTAATTCTTTGACTTTATGTGTGGCATCAATTATTCTTTCTTGCACATGTGAGAGTAAATCATGCATAGTTCATTGTTTGTAGTCATTCCTTCTGTCATCAATATTTTTGCTTATGCTGATTTTTTTTTTTTTGCAGTAATTTATGTGTTCTTTGGGTTTTATGATTTAATTGTTATGTTGTTTTCCTGAATTTATAGGTTGGATATGCTTCAGCTGAGACTTTTTAGTTCAATAGAGAATCATACAACATTTTAGTTGGAGGTATATCTTTTCTGTTAAATTTTTCATGTAGGATTTTGATATTTTTTTCGATGCAGATGGTCGTATCAGGTACGATTTTCTCAAATAATTCTCGGATTTTGTTTTTCGCTCATTAACTTGTTTAATTTGTTACTGAATTCTACCTTCCAATTCTACCAATAATATTCAACCATGTATTTATTTGGATTAAATTTGCTGAGATAAAATTTCTATGGCTGGGCTGGGATGCAGGGGGAGGAATTCATTAGGTTGTTATTAGCAAATACCACTATTTGTTGGGCTAGGATGCATATTGATGCTTAAAAACTCTTTCTTCACTCAACAAATTTTATCAATGCTTTTAACTCATTCCTCCATTTGTTCATGGAATTATGTAATGATGATTTGATGTAAATCCTTACTAATTAAGAATCTTGGCTACAATCTTCTTGGCTTGACATTCAGCTAAGTTAAAGTTAATTGTGAAATCTTCATTTCTTTCATTTAGAGTTCTCTTGGCATATCGTTAGTTTAGTTGATATGTTTGTTTGCTACCATTCATTATTGTAGTTTTTCACCATTCTTCACTTGTGGATTGTTTGGTAGGAAGTTTTGTGAGATAATTCTTTGTGGAATGACTAGGTGA

mRNA sequence

ATGCCACCTAGGTTTTCATCGCGCCATTGTCCTTGGATTTCTCACATAGCAGCAAGTTGTCCAATGATTCCTCGTAAGCGCAAAAGAGTTCTAACTACCTTAAGAATTCAGATGACAAAAGCATCAAGAAGTCGATCGTCGGTCTGGAAACTAACATTGATTGCGATAGACTATAATGCTAGTGATTCAGATTCAGATGAATTGACTCGTGATTCTAACCACACCAGTGTTGTTGATTTCTCTATGTCATGTCAAAACAACCACTTTAATTTATGTGTTCTTTGGGATTTTGATATTTTTTTCGATGCAGATGGTCGTATCAGTTTTTCACCATTCTTCACTTGTGGATTGTTTGGTAGGAAGTTTTGTGAGATAATTCTTTGTGGAATGACTAGGTGA

Coding sequence (CDS)

ATGCCACCTAGGTTTTCATCGCGCCATTGTCCTTGGATTTCTCACATAGCAGCAAGTTGTCCAATGATTCCTCGTAAGCGCAAAAGAGTTCTAACTACCTTAAGAATTCAGATGACAAAAGCATCAAGAAGTCGATCGTCGGTCTGGAAACTAACATTGATTGCGATAGACTATAATGCTAGTGATTCAGATTCAGATGAATTGACTCGTGATTCTAACCACACCAGTGTTGTTGATTTCTCTATGTCATGTCAAAACAACCACTTTAATTTATGTGTTCTTTGGGATTTTGATATTTTTTTCGATGCAGATGGTCGTATCAGTTTTTCACCATTCTTCACTTGTGGATTGTTTGGTAGGAAGTTTTGTGAGATAATTCTTTGTGGAATGACTAGGTGA

Protein sequence

MPPRFSSRHCPWISHIAASCPMIPRKRKRVLTTLRIQMTKASRSRSSVWKLTLIAIDYNASDSDSDELTRDSNHTSVVDFSMSCQNNHFNLCVLWDFDIFFDADGRISFSPFFTCGLFGRKFCEIILCGMTR

Homology

[Close]

BLAST of CsGy5G014520 vs. NCBI nr
Match: XP_011651843.1 (PREDICTED: uncharacterized protein LOC101206121 [Cucumis sativus] >XP_011651844.1 PREDICTED: uncharacterized protein LOC101206121 [Cucumis sativus] >XP_011651845.1 PREDICTED: uncharacterized protein LOC101206121 [Cucumis sativus] >KGN58719.1 hypothetical protein Csa_3G730830 [Cucumis sativus])

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 35  RIQMTKASRSRSSVWKLTLIAIDYNASDSDSDELTRDS 73
           RI MTKASRSRSSVWK++     YNASDSDSDELTRDS
Sbjct: 63  RIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of CsGy5G014520 vs. NCBI nr
Match: XP_008442362.1 (PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo] >XP_008442363.1 PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo] >XP_008442364.1 PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo])

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 35  RIQMTKASRSRSSVWKLTLIAIDYNASDSDSDELTRDS 73
           RI MTKASRSRSSVWK++     YNASDSDSDELTRDS
Sbjct: 63  RIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of CsGy5G014520 vs. NCBI nr
Match: XP_022934323.1 (uncharacterized protein LOC111441521 [Cucurbita moschata] >XP_022934324.1 uncharacterized protein LOC111441521 [Cucurbita moschata] >XP_022983617.1 uncharacterized protein LOC111482171 [Cucurbita maxima] >XP_022983618.1 uncharacterized protein LOC111482171 [Cucurbita maxima] >XP_023526158.1 uncharacterized protein LOC111789719 [Cucurbita pepo subsp. pepo] >XP_023526159.1 uncharacterized protein LOC111789719 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 35  RIQMTKASRSRSSVWKLTLIAIDYNASDSDSDELTRDS 73
           RI MTKASRSRSSVWK++     YNASDSDSDELTRDS
Sbjct: 63  RIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of CsGy5G014520 vs. NCBI nr
Match: XP_022157335.1 (uncharacterized protein LOC111024062 [Momordica charantia])

HSP 1 Score: 53.1 bits (126), Expect = 8.1e-04
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 35  RIQMTKASRSRSSVWKLTLIAIDYNASDSDSDELTRDS 73
           RI MTKASRSRSSVWK++     YNASDSDSD+LTRDS
Sbjct: 63  RIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTRDS 100

[Close]

BLAST of CsGy5G014520 vs. TrEMBL
Match: tr|A0A1S3B5I4|A0A1S3B5I4_CUCME (uncharacterized protein LOC103486254 OS=Cucumis melo OX=3656 GN=LOC103486254 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 35  RIQMTKASRSRSSVWKLTLIAIDYNASDSDSDELTRDS 73
           RI MTKASRSRSSVWK++     YNASDSDSDELTRDS
Sbjct: 63  RIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of CsGy5G014520 vs. TrEMBL
Match: tr|A0A0A0LCP0|A0A0A0LCP0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G730830 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 35  RIQMTKASRSRSSVWKLTLIAIDYNASDSDSDELTRDS 73
           RI MTKASRSRSSVWK++     YNASDSDSDELTRDS
Sbjct: 63  RIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

The following BLAST results are available for this feature:

BLAST of CsGy5G014520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651843.1	3.6e-04	78.95	PREDICTED: uncharacterized protein LOC101206121 [Cucumis sativus] >XP_011651844....	[more]
XP_008442362.1	3.6e-04	78.95	PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo] >XP_008442363.1 P...	[more]
XP_022934323.1	3.6e-04	78.95	uncharacterized protein LOC111441521 [Cucurbita moschata] >XP_022934324.1 unchar...	[more]
XP_022157335.1	8.1e-04	76.32	uncharacterized protein LOC111024062 [Momordica charantia]	[more]

BLAST of CsGy5G014520 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G014520 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G014520 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B5I4\|A0A1S3B5I4_CUCME	2.4e-04	78.95	uncharacterized protein LOC103486254 OS=Cucumis melo OX=3656 GN=LOC103486254 PE=...	[more]
tr\|A0A0A0LCP0\|A0A0A0LCP0_CUCSA	2.4e-04	78.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G730830 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G014520.1	CsGy5G014520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..20 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G014520	Cucurbita maxima (Rimu)	cgybcmaB600
CsGy5G014520	Cucurbita maxima (Rimu)	cgybcmaB676
CsGy5G014520	Cucurbita moschata (Rifu)	cgybcmoB574
CsGy5G014520	Cucurbita moschata (Rifu)	cgybcmoB654
CsGy5G014520	Cucurbita pepo (Zucchini)	cgybcpeB609
CsGy5G014520	Cucurbita pepo (Zucchini)	cgybcpeB650
CsGy5G014520	Cucumber (Chinese Long) v2	cgybcuB223
CsGy5G014520	Bottle gourd (USVL1VR-Ls)	cgyblsiB302
CsGy5G014520	Melon (DHL92) v3.5.1	cgybmeB294
CsGy5G014520	Melon (DHL92) v3.6.1	cgybmedB294
CsGy5G014520	Watermelon (Charleston Gray)	cgybwcgB349
CsGy5G014520	Watermelon (97103) v1	cgybwmB356
CsGy5G014520	Watermelon (97103) v1	cgybwmB357
CsGy5G014520	Wild cucumber (PI 183967)	cgybcpiB225
CsGy5G014520	Silver-seed gourd	carcgybB0533
CsGy5G014520	Silver-seed gourd	carcgybB0819
CsGy5G014520	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G014520	Watermelon (97103) v2	cgybwmbB354
CsGy5G014520	Wax gourd	cgybwgoB428