CsGy5G014270 (gene) Cucumber (Gy14) v2

Overview
NameCsGy5G014270
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr5 : 19577619 .. 19578475 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGCTTCTTGGCCAATCTGGGCTTTCCGTTGACTCTGAAGTTGCCGCGCCCCATGTACTCTATATGGCCCAATGGGCCTTTCACTTCCACCATCGATCCCAACGGGAGCGAGTCAAGATACTGTGACATAAGGCCACCGTTGGGGAAATCGGGATGAACGTTCTTGAAATAGATTTTTACGACTAAGTCGAAGTAGCCCGTTTGGTCAACGGCGCTTGACGGTGTGTAGGCTCTCATACATAGTTTCCCATCCACATTGGCGCATAAAAATATGTGCTTTCCAACGGGTAGTCCTAATCTTTGATCTTCCGAAGAAAGACCAAATCTGAAAATTCTCGTGTTGTGAGAAATTGTAGTTTTCGAAATCAATTTCACCGGGATTTTCTCACGAGGGATCAGAGCCACGTGTTGAGTAACTGCTTTGGGTGATGACGTTGCGTCCTTGTTGTCGTTTAGGATCAACAAGTCTCCGATTTTGTAGTCCTCAAGCATTTTAATGGCTTTGTCGGAGTGGATAGCCTCGAACTCTTCCGTGCAATCTGTGCCAGCGTTGATGAGAATGCTGTCTGCGCCGCCTGGATGGTCTTTGAGAAAAGGAGTACAGTCGTAGACATGGTTCTGGACGACGATCCAAGCCGATTCGGACGAGTTGTGGGTTTTGACTTCCGACATGGAGAAGGTGGTGGTGCTCTTGTTGTCTTTTTGTTGGGAAGGGGACTCGTCGGTCGGATTGGGTTTGTCCTTTTCCTGCCAGCCGCCGGCATTGTTGCCGGCGACTGTTGGGTGGCGGAACACGATCCCGATCTCTCCTTTTTGGGGTTTGCATATGTTTATCTTGATTCGGTACCATGA

mRNA sequence

ATGGCAAGCTTCTTGGCCAATCTGGGCTTTCCGTTGACTCTGAAGTTGCCGCGCCCCATGTACTCTATATGGCCCAATGGGCCTTTCACTTCCACCATCGATCCCAACGGGAGCGAGTCAAGATACTGTGACATAAGGCCACCTCGAAGTAGCCCGTTTGGTCAACGGCGCTTGACGGTGTGTAGGCTCTCATACATAGTTTCCCATCCACATTGGCGCATAAAAATATGTGCTTTCCAACGGGATCAACAAGTCTCCGATTTTGTAGTCCTCAAGCATTTTAATGGCTTTGTCGGAGTGGATAGCCTCGAACTCTTCCGTGCAATCTGTGCCAGCGTTGATGAGAATGCTGTCTGCGCCGCCTGGATGGTCTTTGAGAAAAGGAGTACAGTCGTAGACATGGTTCTGGACGACGATCCAAGCCGATTCGGACGAGTTGTGGGTTTTGACTTCCGACATGGAGAAGGTGGTGGTGCTCTTGTTGTCTTTTTGTTGGGAAGGGGACTCGTCGGTCGGATTGGGTTTGTCCTTTTCCTGCCAGCCGCCGGCATTGTTGCCGGCGACTGTTGGGTGGCGGAACACGATCCCGATCTCTCCTTTTTGGGGTTTGCATATGTTTATCTTGATTCGGTACCATGA

Coding sequence (CDS)

ATGGCAAGCTTCTTGGCCAATCTGGGCTTTCCGTTGACTCTGAAGTTGCCGCGCCCCATGTACTCTATATGGCCCAATGGGCCTTTCACTTCCACCATCGATCCCAACGGGAGCGAGTCAAGATACTGTGACATAAGGCCACCTCGAAGTAGCCCGTTTGGTCAACGGCGCTTGACGGTGTGTAGGCTCTCATACATAGTTTCCCATCCACATTGGCGCATAAAAATATGTGCTTTCCAACGGGATCAACAAGTCTCCGATTTTGTAGTCCTCAAGCATTTTAATGGCTTTGTCGGAGTGGATAGCCTCGAACTCTTCCGTGCAATCTGTGCCAGCGTTGATGAGAATGCTGTCTGCGCCGCCTGGATGGTCTTTGAGAAAAGGAGTACAGTCGTAGACATGGTTCTGGACGACGATCCAAGCCGATTCGGACGAGTTGTGGGTTTTGACTTCCGACATGGAGAAGGTGGTGGTGCTCTTGTTGTCTTTTTGTTGGGAAGGGGACTCGTCGGTCGGATTGGGTTTGTCCTTTTCCTGCCAGCCGCCGGCATTGTTGCCGGCGACTGTTGGGTGGCGGAACACGATCCCGATCTCTCCTTTTTGGGGTTTGCATATGTTTATCTTGATTCGGTACCATGA

Protein sequence

MASFLANLGFPLTLKLPRPMYSIWPNGPFTSTIDPNGSESRYCDIRPPRSSPFGQRRLTVCRLSYIVSHPHWRIKICAFQRDQQVSDFVVLKHFNGFVGVDSLELFRAICASVDENAVCAAWMVFEKRSTVVDMVLDDDPSRFGRVVGFDFRHGEGGGALVVFLLGRGLVGRIGFVLFLPAAGIVAGDCWVAEHDPDLSFLGFAYVYLDSVP
Homology
[Close]
BLAST of CsGy5G014270 vs. NCBI nr
Match: KVH15484.1 (hypothetical protein Ccrd_025923 [Cynara cardunculus var. scolymus])

HSP 1 Score: 114.4 bits (285), Expect = 4.8e-22
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 0 

Query: 1   MASFLANLGFPLTLKLPRPMYSIWPNGPFTSTIDPNGSESRYCDIRPPRSSPFGQRRLTV 60
           MA+ +AN  FP T  +P PMYS+ PNGP  S+ +P+G++SRYCDIRP    PFG    T 
Sbjct: 50  MANLVANFCFPWTENVPFPMYSMCPNGPLMSSKEPSGNDSRYCDIRP----PFGNLGSTP 109

Query: 61  CRLSYIVSHPHWRIKICAFQRDQQVSDFVVLKHFNGFVGVDSLELFRAICASVDENAVCA 120
                +V+H +            +++D  + +   G +G+D +ELF  + +S+DENAV  
Sbjct: 110 LNRIRVVAHGY------------ELTDSKLFQELLGLIGMDCIELFSTVGSSIDENAVTT 169

Query: 121 AWMVFEKRSTVVDMVLDDDPSRFG 145
             MVFE+   VVD+ +DD+PSR G
Sbjct: 170 TGMVFEEVGAVVDVTMDDNPSRVG 177

[Close]
BLAST of CsGy5G014270 vs. TrEMBL
Match: tr|A0A103TE07|A0A103TE07_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_025923 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.2e-22
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 0 

Query: 1   MASFLANLGFPLTLKLPRPMYSIWPNGPFTSTIDPNGSESRYCDIRPPRSSPFGQRRLTV 60
           MA+ +AN  FP T  +P PMYS+ PNGP  S+ +P+G++SRYCDIRP    PFG    T 
Sbjct: 50  MANLVANFCFPWTENVPFPMYSMCPNGPLMSSKEPSGNDSRYCDIRP----PFGNLGSTP 109

Query: 61  CRLSYIVSHPHWRIKICAFQRDQQVSDFVVLKHFNGFVGVDSLELFRAICASVDENAVCA 120
                +V+H +            +++D  + +   G +G+D +ELF  + +S+DENAV  
Sbjct: 110 LNRIRVVAHGY------------ELTDSKLFQELLGLIGMDCIELFSTVGSSIDENAVTT 169

Query: 121 AWMVFEKRSTVVDMVLDDDPSRFG 145
             MVFE+   VVD+ +DD+PSR G
Sbjct: 170 TGMVFEEVGAVVDVTMDDNPSRVG 177

[Close]
BLAST of CsGy5G014270 vs. TrEMBL
Match: tr|J3MTP9|J3MTP9_ORYBR (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-05
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 0 

Query: 9   GFPLTLKLPRPMYSIWPNGPFTSTIDPNGSESRYCDIRPP 49
           G PL +K PRP+YS WP+GP TS   P GS+SRYC + PP
Sbjct: 136 GLPLMMKSPRPVYSTWPSGPLTSMWAPTGSDSRYCVMSPP 175

The following BLAST results are available for this feature:
BLAST of CsGy5G014270 vs. NCBI nr
Match NameE-valueIdentityDescription
KVH15484.14.8e-2240.97hypothetical protein Ccrd_025923 [Cynara cardunculus var. scolymus][more]
BLAST of CsGy5G014270 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy5G014270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy5G014270 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A103TE07|A0A103TE07_CYNCS3.2e-2240.97Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_025... [more]
tr|J3MTP9|J3MTP9_ORYBR1.6e-0560.00Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G014270.1CsGy5G014270.1mRNA