CsGy5G010130 (gene) Cucumber (Gy14) v2

Overview
NameCsGy5G010130
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Description60S ribosomal protein L21-1
LocationChr5 : 9156835 .. 9158028 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTATTAAAAGGTATCGAGTGTATAAAAAAATATCAGGTTCATCAAGTGTATCAATCAAATGTATCGGGTGTATCAAGAAGTATCAGGTGTATCAAGGGGTATTAGACGTGTATAAGGTGTATCAAACGTATATTAGTAACGAGGGCATTTGTAACATTTTACCTAATGTGTGAGCTGAGTTTCGTTTTTGCCATTTTTGCAAATAATAAAGTGTGTGTGCTATGGACTTAATAATTATAATTTATTTTGTCATTTTTACAAGTGACCATTTTTAATTTTCGTGGAGAAATAATGAACTCTGATTGCAGGTTTGTTTCAGTTGAATATTTACTGTTACTTTAGGTAGTATAGTTATATTTGTAATTGTCCCTAATTTTATTAAAATATTTTATGGTGTTTTTTTTTTTTAGACTAATGATATCTTTGGATTACATTTTCAAGTGTTAAATTTAGAAAGTAAGTTATTTTGAAGTGTTGGGAAGCTACACAAAAATATATTTTTAAGTGTATTTTAAACAATTTTTATGCCAACTTTTTGCTTTGACTACCTACTTGAGTGAGGACATACAAAATTAGTGATTATGTCGATATCAAGGTGAATGATGTCGTCCACAAGAGTATGCCTCATAAATTTTACCATGGTCGCACAAATCGCGTATGGAATGATACAAAGCATGTCATCGGCGTCGAGATCAACATGCAGGTTTAGAATTCTTTTTTAAAATTTGTTCTAGTGTTTAGAATGTATGTGAATCTAGTGATTTAGGGTAATAGATTGTGTTTGGTTTTTATAGAATCTTAATTAGTTTTTGGACTCTGTTTTTCTTATTAAACTTTGTTAGTTTGATGGGTTTTGGAATCTGATGAGAGAAACTTCCATTATGATTTCGACTCTATTTCTTATTAAACTTGTGATGCCGAGAATGAATTTTGCAGGACGGGAACATAATTACTAAGAAGAGAATTCATGTCAGAGTCGATCACGTGTAGCATTCTCGATGCATCGAGGAATTTCGCTTAAGGAAGGTGAAGAATGACGACCTGAAGGCCGAAGCCAAGGCCAAAGGCGCAGTCATCTACACCAAAAGGCAATCGAAAGGCCCCAAACCAGGGTTCATAGTTGAAGGTGTTTTAGTAGAGACTGGGACTCTTGTTCCATACAATGTGATTAATGATCTAAAGGGTGGCTATTAG

mRNA sequence

CTATTAAAAGGTATCGAGTGTATAAAAAAATATCAGGTTCATCAAGTGTATCAATCAAATGTATCGGGTGTATCAAGAAGTATCAGGTGTATCAAGGGGTATTAGACGTGTATAAGGTGTATCAAACGTATATTAGTAACGAGGGCATTTGTAACATTTTACCTAATGTGTGAGCTGAGTTTCGTTTTTGCCATTTTTGCAAATAATAAAGTGTGTGTGCTATGGACTTAATAATTATAATTTATTTTGTCATTTTTACAAGTGACCATTTTTAATTTTCGTGGAGAAATAATGAACTCTGATTGCAGGTTTGTTTCAGTTGAATATTTACTGTTACTTTAGGTAGTATAGTTATATTTGTAATTGTCCCTAATTTTATTAAAATATTTTATGGTGTTTTTTTTTTTTAGACTAATGATATCTTTGGATTACATTTTCAAGTGTTAAATTTAGAAAGTAAGTTATTTTGAAGTGTTGGGAAGCTACACAAAAATATATTTTTAAGTGTATTTTAAACAATTTTTATGCCAACTTTTTGCTTTGACTACCTACTTGAGTGAGGACATACAAAATTAGTGATTATGTCGATATCAAGGTGAATGATGTCGTCCACAAGAGTATGCCTCATAAATTTTACCATGGTCGCACAAATCGCGTATGGAATGATACAAAGCATGTCATCGGCGTCGAGATCAACATGCAGCATTCTCGATGCATCGAGGAATTTCGCTTAAGGAAGGTGAAGAATGACGACCTGAAGGCCGAAGCCAAGGCCAAAGGCGCAGTCATCTACACCAAAAGGCAATCGAAAGGCCCCAAACCAGGGTTCATAGTTGAAGGTGTTTTAGTAGAGACTGGGACTCTTGTTCCATACAATGTGATTAATGATCTAAAGGGTGGCTATTAG

Coding sequence (CDS)

ATGCCTCATAAATTTTACCATGGTCGCACAAATCGCGTATGGAATGATACAAAGCATGTCATCGGCGTCGAGATCAACATGCAGCATTCTCGATGCATCGAGGAATTTCGCTTAAGGAAGGTGAAGAATGACGACCTGAAGGCCGAAGCCAAGGCCAAAGGCGCAGTCATCTACACCAAAAGGCAATCGAAAGGCCCCAAACCAGGGTTCATAGTTGAAGGTGTTTTAGTAGAGACTGGGACTCTTGTTCCATACAATGTGATTAATGATCTAAAGGGTGGCTATTAG

Protein sequence

MPHKFYHGRTNRVWNDTKHVIGVEINMQHSRCIEEFRLRKVKNDDLKAEAKAKGAVIYTKRQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY
Homology
[Close]
BLAST of CsGy5G010130 vs. NCBI nr
Match: KGN50837.1 (hypothetical protein Csa_5G284530 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 3.0e-48
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MPHKFYHGRTNRVWNDTKHVIGVEINMQHSRCIEEFRLRKVKNDDLKAEAKAKGAVIYTK 60
          MPHKFYHGRTNRVWNDTKHVIGVEINMQHSRCIEEFRLRKVKNDDLKAEAKAKGAVIYTK
Sbjct: 1  MPHKFYHGRTNRVWNDTKHVIGVEINMQHSRCIEEFRLRKVKNDDLKAEAKAKGAVIYTK 60

Query: 61 RQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY 96
          RQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY
Sbjct: 61 RQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY 95

[Close]
BLAST of CsGy5G010130 vs. NCBI nr
Match: XP_008443016.1 (PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo])

HSP 1 Score: 148.7 bits (374), Expect = 1.0e-32
Identity = 75/113 (66.37%), Postives = 83/113 (73.45%), Query Frame = 0 

Query: 1   MPHKFYHGRTNRVWNDTKHVIGVEIN------------------MQHSRCIEEFRLRKVK 60
           MPHKFYHGRT RVWN TK  IGVEIN                  +Q SRC EEFRLRKVK
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVK 111

Query: 61  NDDLKAEAKAKGAVIYTKRQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY 96
           ND+LKAEAKAKG VI TKRQ +GPKPGF+VEG L+ET T +PY+V+NDLKGGY
Sbjct: 112 NDELKAEAKAKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsGy5G010130 vs. NCBI nr
Match: XP_024189655.1 (60S ribosomal protein L21-1 [Rosa chinensis] >PRQ44410.1 putative ribosomal protein L21e [Rosa chinensis])

HSP 1 Score: 148.7 bits (374), Expect = 1.0e-32
Identity = 75/113 (66.37%), Postives = 83/113 (73.45%), Query Frame = 0 

Query: 1   MPHKFYHGRTNRVWNDTKHVIGVEIN------------------MQHSRCIEEFRLRKVK 60
           MPHKFYHGRT RVWN TK  IGVEIN                  +Q SRC EEFRLRKVK
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKVK 111

Query: 61  NDDLKAEAKAKGAVIYTKRQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY 96
           ND+LKAEAKAKG VI TKRQ KGPKPGF+VEG ++ET T +PY+V+NDLKGGY
Sbjct: 112 NDELKAEAKAKGEVISTKRQPKGPKPGFMVEGAVMETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsGy5G010130 vs. NCBI nr
Match: XP_004303353.1 (PREDICTED: 60S ribosomal protein L21-1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 148.3 bits (373), Expect = 1.3e-32
Identity = 75/113 (66.37%), Postives = 82/113 (72.57%), Query Frame = 0 

Query: 1   MPHKFYHGRTNRVWNDTKHVIGVEIN------------------MQHSRCIEEFRLRKVK 60
           MPHKFYHGRT RVWN TK  IGVEIN                  +Q SRC EEFRLRKVK
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKVK 111

Query: 61  NDDLKAEAKAKGAVIYTKRQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY 96
           ND LKAEAKAKG VI TKRQ KGPKPGF+VEG ++ET T +PY+V+NDLKGGY
Sbjct: 112 NDQLKAEAKAKGVVISTKRQPKGPKPGFMVEGAVMETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsGy5G010130 vs. NCBI nr
Match: XP_022934302.1 (60S ribosomal protein L21-1 [Cucurbita moschata] >XP_022983132.1 60S ribosomal protein L21-1 [Cucurbita maxima] >XP_023527248.1 60S ribosomal protein L21-1 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023527250.1 60S ribosomal protein L21-1 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023527251.1 60S ribosomal protein L21-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.5 bits (371), Expect = 2.3e-32
Identity = 75/113 (66.37%), Postives = 82/113 (72.57%), Query Frame = 0 

Query: 1   MPHKFYHGRTNRVWNDTKHVIGVEIN------------------MQHSRCIEEFRLRKVK 60
           MPHKFYHGRT RVWN TK  IGVEIN                  +Q SRC EEFRLRKVK
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVK 111

Query: 61  NDDLKAEAKAKGAVIYTKRQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY 96
           ND LKAEAKAKG VI TKRQ +GPKPGF+VEG L+ET T +PY+V+NDLKGGY
Sbjct: 112 NDQLKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsGy5G010130 vs. TAIR10
Match: AT1G09590.1 (Translation protein SH3-like family protein)

HSP 1 Score: 138.7 bits (348), Expect = 1.9e-33
Identity = 67/113 (59.29%), Postives = 79/113 (69.91%), Query Frame = 0 

Query: 1   MPHKFYHGRTNRVWNDTKHVIGVEIN------------------MQHSRCIEEFRLRKVK 60
           MPHKFYHGRT R+WN TK  +GVE+N                  +Q SRC EEF+LRK K
Sbjct: 52  MPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111

Query: 61  NDDLKAEAKAKGAVIYTKRQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY 96
           ND+LKA AKA G  I TKRQ KGPKPGF+VEG+ +ET T +PY+V+NDLKGGY
Sbjct: 112 NDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsGy5G010130 vs. TAIR10
Match: AT1G09690.1 (Translation protein SH3-like family protein)

HSP 1 Score: 138.7 bits (348), Expect = 1.9e-33
Identity = 67/113 (59.29%), Postives = 79/113 (69.91%), Query Frame = 0 

Query: 1   MPHKFYHGRTNRVWNDTKHVIGVEIN------------------MQHSRCIEEFRLRKVK 60
           MPHKFYHGRT R+WN TK  +GVE+N                  +Q SRC EEF+LRK K
Sbjct: 52  MPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111

Query: 61  NDDLKAEAKAKGAVIYTKRQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY 96
           ND+LKA AKA G  I TKRQ KGPKPGF+VEG+ +ET T +PY+V+NDLKGGY
Sbjct: 112 NDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsGy5G010130 vs. TAIR10
Match: AT1G57660.1 (Translation protein SH3-like family protein)

HSP 1 Score: 137.1 bits (344), Expect = 5.6e-33
Identity = 66/113 (58.41%), Postives = 80/113 (70.80%), Query Frame = 0 

Query: 1   MPHKFYHGRTNRVWNDTKHVIGVEIN------------------MQHSRCIEEFRLRKVK 60
           MPHKFYHGRT R+WN TK  +GVE+N                  +Q SRC EEF+LRK +
Sbjct: 52  MPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111

Query: 61  NDDLKAEAKAKGAVIYTKRQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY 96
           ND LKA+AKA+G  I TKRQ KGPKPGF+VEG+ +ET T +PY+V+NDLKGGY
Sbjct: 112 NDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsGy5G010130 vs. TAIR10
Match: AT1G57860.1 (Translation protein SH3-like family protein)

HSP 1 Score: 137.1 bits (344), Expect = 5.6e-33
Identity = 66/113 (58.41%), Postives = 80/113 (70.80%), Query Frame = 0 

Query: 1   MPHKFYHGRTNRVWNDTKHVIGVEIN------------------MQHSRCIEEFRLRKVK 60
           MPHKFYHGRT R+WN TK  +GVE+N                  +Q SRC EEF+LRK +
Sbjct: 52  MPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111

Query: 61  NDDLKAEAKAKGAVIYTKRQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY 96
           ND LKA+AKA+G  I TKRQ KGPKPGF+VEG+ +ET T +PY+V+NDLKGGY
Sbjct: 112 NDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsGy5G010130 vs. Swiss-Prot
Match: sp|Q43291|RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 3.5e-32
Identity = 67/113 (59.29%), Postives = 79/113 (69.91%), Query Frame = 0 

Query: 1   MPHKFYHGRTNRVWNDTKHVIGVEIN------------------MQHSRCIEEFRLRKVK 60
           MPHKFYHGRT R+WN TK  +GVE+N                  +Q SRC EEF+LRK K
Sbjct: 52  MPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111

Query: 61  NDDLKAEAKAKGAVIYTKRQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY 96
           ND+LKA AKA G  I TKRQ KGPKPGF+VEG+ +ET T +PY+V+NDLKGGY
Sbjct: 112 NDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsGy5G010130 vs. Swiss-Prot
Match: sp|Q9FDZ9|RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.0e-31
Identity = 66/113 (58.41%), Postives = 80/113 (70.80%), Query Frame = 0 

Query: 1   MPHKFYHGRTNRVWNDTKHVIGVEIN------------------MQHSRCIEEFRLRKVK 60
           MPHKFYHGRT R+WN TK  +GVE+N                  +Q SRC EEF+LRK +
Sbjct: 52  MPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111

Query: 61  NDDLKAEAKAKGAVIYTKRQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY 96
           ND LKA+AKA+G  I TKRQ KGPKPGF+VEG+ +ET T +PY+V+NDLKGGY
Sbjct: 112 NDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsGy5G010130 vs. Swiss-Prot
Match: sp|Q02753|RL21A_YEAST (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21A PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-09
Identity = 41/105 (39.05%), Postives = 54/105 (51.43%), Query Frame = 0 

Query: 1   MPHKFYHGRTNRVWNDTKHVIGVEIN------------------MQHSRCIEEFRLRKVK 60
           MPHKFY G+T  V+N TK  +GV IN                  ++HS+C +EF  R   
Sbjct: 52  MPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKA 111

Query: 61  NDDLKAEAKAKGAVIYTKRQSKGPKPGFIV--EGVLVETGTLVPY 86
           N   +AEAKA+G  +  KRQ   P+   IV  EG + +T   VPY
Sbjct: 112 NAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPY 156

[Close]
BLAST of CsGy5G010130 vs. Swiss-Prot
Match: sp|Q12672|RL21B_YEAST (60S ribosomal protein L21-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21B PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-09
Identity = 41/105 (39.05%), Postives = 54/105 (51.43%), Query Frame = 0 

Query: 1   MPHKFYHGRTNRVWNDTKHVIGVEIN------------------MQHSRCIEEFRLRKVK 60
           MPHKFY G+T  V+N TK  +GV IN                  ++HS+C +EF  R   
Sbjct: 52  MPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKA 111

Query: 61  NDDLKAEAKAKGAVIYTKRQSKGPKPGFIV--EGVLVETGTLVPY 86
           N   +AEAKA+G  +  KRQ   P+   IV  EG + +T   VPY
Sbjct: 112 NAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPY 156

[Close]
BLAST of CsGy5G010130 vs. Swiss-Prot
Match: sp|Q6QN05|RL21_CHILA (60S ribosomal protein L21 OS=Chinchilla lanigera OX=34839 GN=RPL21 PE=2 SV=3)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08
Identity = 33/90 (36.67%), Postives = 44/90 (48.89%), Query Frame = 0 

Query: 1   MPHKFYHGRTNRVWNDTKHVIGVEINMQ------------------HSRCIEEFRLRKVK 60
           MPHK YHG+T RV+N T+H +G+ +N Q                  HS+  + F  R  +
Sbjct: 52  MPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKE 111

Query: 61  NDDLKAEAKAKGAVIYTKRQSKGPKPGFIV 73
           ND  K EAK KG  +  KRQ   P+    V
Sbjct: 112 NDQKKKEAKEKGTWVQLKRQPAPPREAHFV 141

[Close]
BLAST of CsGy5G010130 vs. TrEMBL
Match: tr|A0A0A0KQY9|A0A0A0KQY9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G284530 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.0e-48
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MPHKFYHGRTNRVWNDTKHVIGVEINMQHSRCIEEFRLRKVKNDDLKAEAKAKGAVIYTK 60
          MPHKFYHGRTNRVWNDTKHVIGVEINMQHSRCIEEFRLRKVKNDDLKAEAKAKGAVIYTK
Sbjct: 1  MPHKFYHGRTNRVWNDTKHVIGVEINMQHSRCIEEFRLRKVKNDDLKAEAKAKGAVIYTK 60

Query: 61 RQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY 96
          RQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY
Sbjct: 61 RQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY 95

[Close]
BLAST of CsGy5G010130 vs. TrEMBL
Match: tr|A0A1S3B7V0|A0A1S3B7V0_CUCME (60S ribosomal protein L21-1 OS=Cucumis melo OX=3656 GN=LOC103486741 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.8e-33
Identity = 75/113 (66.37%), Postives = 83/113 (73.45%), Query Frame = 0 

Query: 1   MPHKFYHGRTNRVWNDTKHVIGVEIN------------------MQHSRCIEEFRLRKVK 60
           MPHKFYHGRT RVWN TK  IGVEIN                  +Q SRC EEFRLRKVK
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVK 111

Query: 61  NDDLKAEAKAKGAVIYTKRQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY 96
           ND+LKAEAKAKG VI TKRQ +GPKPGF+VEG L+ET T +PY+V+NDLKGGY
Sbjct: 112 NDELKAEAKAKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsGy5G010130 vs. TrEMBL
Match: tr|A0A2P6RDB8|A0A2P6RDB8_ROSCH (Putative ribosomal protein L21e OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0478971 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.8e-33
Identity = 75/113 (66.37%), Postives = 83/113 (73.45%), Query Frame = 0 

Query: 1   MPHKFYHGRTNRVWNDTKHVIGVEIN------------------MQHSRCIEEFRLRKVK 60
           MPHKFYHGRT RVWN TK  IGVEIN                  +Q SRC EEFRLRKVK
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKVK 111

Query: 61  NDDLKAEAKAKGAVIYTKRQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY 96
           ND+LKAEAKAKG VI TKRQ KGPKPGF+VEG ++ET T +PY+V+NDLKGGY
Sbjct: 112 NDELKAEAKAKGEVISTKRQPKGPKPGFMVEGAVMETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsGy5G010130 vs. TrEMBL
Match: tr|A0A1U8IQH6|A0A1U8IQH6_GOSHI (60S ribosomal protein L21-1-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107899215 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.0e-32
Identity = 73/113 (64.60%), Postives = 82/113 (72.57%), Query Frame = 0 

Query: 1   MPHKFYHGRTNRVWNDTKHVIGVEIN------------------MQHSRCIEEFRLRKVK 60
           MPHKFYHGRT RVWN TK  IGVE+N                  +Q SRC+EEF+LRKVK
Sbjct: 1   MPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRTIRKRIHVRVEHVQPSRCVEEFKLRKVK 60

Query: 61  NDDLKAEAKAKGAVIYTKRQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY 96
           ND LKAEAKAKG VI TKRQ KGPKPGF+VEG  +ET T +PY+V+NDLKGGY
Sbjct: 61  NDQLKAEAKAKGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 113

[Close]
BLAST of CsGy5G010130 vs. TrEMBL
Match: tr|A0A0A0LEZ0|A0A0A0LEZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G797610 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.0e-32
Identity = 74/113 (65.49%), Postives = 83/113 (73.45%), Query Frame = 0 

Query: 1   MPHKFYHGRTNRVWNDTKHVIGVEIN------------------MQHSRCIEEFRLRKVK 60
           MPHKFYHGRT +VWN TK  IGVEIN                  +Q SRC EEFRLRKVK
Sbjct: 52  MPHKFYHGRTGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVK 111

Query: 61  NDDLKAEAKAKGAVIYTKRQSKGPKPGFIVEGVLVETGTLVPYNVINDLKGGY 96
           ND+LKAEAKAKG VI TKRQ +GPKPGF+VEG L+ET T +PY+V+NDLKGGY
Sbjct: 112 NDELKAEAKAKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

The following BLAST results are available for this feature:
BLAST of CsGy5G010130 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50837.13.0e-48100.00hypothetical protein Csa_5G284530 [Cucumis sativus][more]
XP_008443016.11.0e-3266.37PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo][more]
XP_024189655.11.0e-3266.3760S ribosomal protein L21-1 [Rosa chinensis] >PRQ44410.1 putative ribosomal prot... [more]
XP_004303353.11.3e-3266.37PREDICTED: 60S ribosomal protein L21-1 [Fragaria vesca subsp. vesca][more]
XP_022934302.12.3e-3266.3760S ribosomal protein L21-1 [Cucurbita moschata] >XP_022983132.1 60S ribosomal p... [more]
BLAST of CsGy5G010130 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09590.11.9e-3359.29Translation protein SH3-like family protein[more]
AT1G09690.11.9e-3359.29Translation protein SH3-like family protein[more]
AT1G57660.15.6e-3358.41Translation protein SH3-like family protein[more]
AT1G57860.15.6e-3358.41Translation protein SH3-like family protein[more]
BLAST of CsGy5G010130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q43291|RL211_ARATH3.5e-3259.2960S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2[more]
sp|Q9FDZ9|RL212_ARATH1.0e-3158.4160S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1[more]
sp|Q02753|RL21A_YEAST1.8e-0939.0560S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2... [more]
sp|Q12672|RL21B_YEAST1.8e-0939.0560S ribosomal protein L21-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2... [more]
sp|Q6QN05|RL21_CHILA1.2e-0836.6760S ribosomal protein L21 OS=Chinchilla lanigera OX=34839 GN=RPL21 PE=2 SV=3[more]
BLAST of CsGy5G010130 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KQY9|A0A0A0KQY9_CUCSA2.0e-48100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G284530 PE=4 SV=1[more]
tr|A0A1S3B7V0|A0A1S3B7V0_CUCME6.8e-3366.3760S ribosomal protein L21-1 OS=Cucumis melo OX=3656 GN=LOC103486741 PE=4 SV=1[more]
tr|A0A2P6RDB8|A0A2P6RDB8_ROSCH6.8e-3366.37Putative ribosomal protein L21e OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0478... [more]
tr|A0A1U8IQH6|A0A1U8IQH6_GOSHI2.0e-3264.6060S ribosomal protein L21-1-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC... [more]
tr|A0A0A0LEZ0|A0A0A0LEZ0_CUCSA2.0e-3265.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G797610 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like_sf
IPR001147Ribosomal_L21e
IPR036948Ribosomal_L21_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G010130.1CsGy5G010130.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036948Ribosomal protein L21 superfamilyGENE3DG3DSA:2.30.30.70coord: 1..43
e-value: 2.6E-8
score: 35.8
IPR001147Ribosomal protein L21ePFAMPF01157Ribosomal_L21ecoord: 1..30
e-value: 4.3E-7
score: 29.7
IPR001147Ribosomal protein L21ePANTHERPTHR2098160S RIBOSOMAL PROTEIN L21coord: 27..92
IPR001147Ribosomal protein L21ePANTHERPTHR2098160S RIBOSOMAL PROTEIN L21coord: 1..28
NoneNo IPR availablePANTHERPTHR20981:SF1560S RIBOSOMAL PROTEIN L21-1-RELATEDcoord: 1..28
NoneNo IPR availablePANTHERPTHR20981:SF1560S RIBOSOMAL PROTEIN L21-1-RELATEDcoord: 27..92
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILYSSF50104Translation proteins SH3-like domaincoord: 1..28

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy5G010130Csa5G284530Cucumber (Chinese Long) v2cgybcuB232
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy5G010130Cucurbita maxima (Rimu)cgybcmaB664
CsGy5G010130Cucurbita moschata (Rifu)cgybcmoB641
CsGy5G010130Cucurbita pepo (Zucchini)cgybcpeB642
CsGy5G010130Melon (DHL92) v3.5.1cgybmeB314
CsGy5G010130Melon (DHL92) v3.5.1cgybmeB328
CsGy5G010130Melon (DHL92) v3.6.1cgybmedB313
CsGy5G010130Wild cucumber (PI 183967)cgybcpiB235
CsGy5G010130Silver-seed gourdcarcgybB0191
CsGy5G010130Cucumber (Chinese Long) v3cgybcucB232
CsGy5G010130Wax gourdcgybwgoB490