CsGy5G010120 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G010120
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	fasciclin-like arabinogalactan protein 10
Location	Chr5 : 9154060 .. 9154663 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTGATTGTTTCTAACGATGTGATTAAGACTTATGAATCCGCGGTTGAGAAAGGATTAACTATATTTGCGTCGAACGATGAGGCATTTAAAACCGATGGAGTTCCACATCTGTGTAAGCTTACTAATACCGAAGTTTTTTCGTTTCTCTTTATTTGCTTTCACATTGGCTTATCAAAGTATGAGAATCTTTATTCAAAGGTGGGTCTGACCTAAAATAAAATATGGTTCTCAAATTTGGAAGAAGTTATTAAGGAATAGGGATTTTTATTACACCCTTTTTCCCGCTCGCTACATGTGTGTATGTCTATATATATAAAAAAATTAAAATCACATTTCAGGAAAATGAAAGGATAAGAGAGAGAGAGCTAAGGTTTCACATAAAGAAGAGGCCGTAAAGAGGAAAAGGTGCATGAAGTCGATTATATATATATATAATTTAGACATTCAAGTTGACTTTTTTGTTTCCAACACTTGTTCAAGACTCTCAACTACATTACGTGTGTTCTGTTTTCTCATTGTCCAAATGTGTAAACAGTTGTATTCTAACCTCAGTTTTCTACAATCAATATATATTTGTTCTTGTTCTATTGATTCTTTG

mRNA sequence

ATGGCACTGATTGTTTCTAACGATGTGATTAAGACTTATGAATCCGCGGTTGAGAAAGGATTAACTATATTTGCGTCGAACGATGAGGCATTTAAAACCGATGGAGATAAGAGAGAGAGAGCTAAGGTTTCACATAAAGAAGAGGCCGTAAAGAGGAAAAGGTGCATGAAGTCGATTATATATATATATAATTTAGACATTCAAGTTGACTTTTTTGTTTCCAACACTTGTTCAAGACTCTCAACTACATTACGTGTGTTCTGTTTTCTCATTGTCCAAATGTGTAAACAGTTGTATTCTAACCTCAGTTTTCTACAATCAATATATATTTGTTCTTGTTCTATTGATTCTTTG

Coding sequence (CDS)

ATGGCACTGATTGTTTCTAACGATGTGATTAAGACTTATGAATCCGCGGTTGAGAAAGGATTAACTATATTTGCGTCGAACGATGAGGCATTTAAAACCGATGGAGATAAGAGAGAGAGAGCTAAGGTTTCACATAAAGAAGAGGCCGTAAAGAGGAAAAGGTGCATGAAGTCGATTATATATATATATAATTTAGACATTCAAGTTGACTTTTTTGTTTCCAACACTTGTTCAAGACTCTCAACTACATTACGTGTGTTCTGTTTTCTCATTGTCCAAATGTGTAAACAGTTGTATTCTAACCTCAGTTTTCTACAATCAATATATATTTGTTCTTGTTCTATTGATTCTTTG

Protein sequence

MALIVSNDVIKTYESAVEKGLTIFASNDEAFKTDGDKRERAKVSHKEEAVKRKRCMKSIIYIYNLDIQVDFFVSNTCSRLSTTLRVFCFLIVQMCKQLYSNLSFLQSIYICSCSIDSL

Homology

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BLAST of CsGy5G010120 vs. NCBI nr
Match: XP_004153890.1 (PREDICTED: fasciclin-like arabinogalactan protein 10 [Cucumis sativus] >KGN46232.1 hypothetical protein Csa_6G076800 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 4.5e-06
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 2   ALIVSNDVIKTYESAVEKGLTIFASNDEAFKTDG 36
           ALIVSN VIKTYESAVEKGLTIFA NDEAFK DG
Sbjct: 201 ALIVSNGVIKTYESAVEKGLTIFAPNDEAFKADG 234

[Close]

BLAST of CsGy5G010120 vs. NCBI nr
Match: XP_008460132.1 (PREDICTED: fasciclin-like arabinogalactan protein 10 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-05
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 2   ALIVSNDVIKTYESAVEKGLTIFASNDEAFKTDG 36
           +LIVSN VIKTYESAVEKGLTIFA NDEAFK DG
Sbjct: 201 SLIVSNGVIKTYESAVEKGLTIFAPNDEAFKADG 234

[Close]

BLAST of CsGy5G010120 vs. NCBI nr
Match: XP_022959190.1 (fasciclin-like arabinogalactan protein 10 [Cucurbita moschata])

HSP 1 Score: 58.5 bits (140), Expect = 1.7e-05
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 2   ALIVSNDVIKTYESAVEKGLTIFASNDEAFKTDG 36
           +L+VSN VIKTYESAVEKGLTIFA NDEAFK DG
Sbjct: 200 SLLVSNGVIKTYESAVEKGLTIFAPNDEAFKADG 233

[Close]

BLAST of CsGy5G010120 vs. NCBI nr
Match: XP_023006091.1 (fasciclin-like arabinogalactan protein 10 [Cucurbita maxima])

HSP 1 Score: 58.5 bits (140), Expect = 1.7e-05
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 2   ALIVSNDVIKTYESAVEKGLTIFASNDEAFKTDG 36
           +L+VSN VIKTYESAVEKGLTIFA NDEAFK DG
Sbjct: 200 SLLVSNGVIKTYESAVEKGLTIFAPNDEAFKADG 233

[Close]

BLAST of CsGy5G010120 vs. NCBI nr
Match: XP_023547830.1 (fasciclin-like arabinogalactan protein 10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.5 bits (140), Expect = 1.7e-05
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 2   ALIVSNDVIKTYESAVEKGLTIFASNDEAFKTDG 36
           +L+VSN VIKTYESAVEKGLTIFA NDEAFK DG
Sbjct: 200 SLLVSNGVIKTYESAVEKGLTIFAPNDEAFKADG 233

[Close]

BLAST of CsGy5G010120 vs. TAIR10
Match: AT2G45470.1 (FASCICLIN-like arabinogalactan protein 8)

HSP 1 Score: 51.6 bits (122), Expect = 3.8e-07
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 3   LIVSNDVIKTYESAVEKGLTIFASNDEAFKTDG 36
           L+VS+ V+KTYESAVEKGLT+FA +DEAFK +G
Sbjct: 205 LLVSSGVLKTYESAVEKGLTVFAPSDEAFKAEG 237

[Close]

BLAST of CsGy5G010120 vs. TAIR10
Match: AT3G60900.1 (FASCICLIN-like arabinogalactan-protein 10)

HSP 1 Score: 47.8 bits (112), Expect = 5.5e-06
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 3   LIVSNDVIKTYESAVEKGLTIFASNDEAFKTDG 36
           L+VS+ VIKT+ES VEKGLT+FA +DEAFK  G
Sbjct: 206 LLVSSGVIKTFESTVEKGLTVFAPSDEAFKARG 238

[Close]

BLAST of CsGy5G010120 vs. Swiss-Prot
Match: sp|O22126|FLA8_ARATH (Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana OX=3702 GN=FLA8 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.9e-06
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 3   LIVSNDVIKTYESAVEKGLTIFASNDEAFKTDG 36
           L+VS+ V+KTYESAVEKGLT+FA +DEAFK +G
Sbjct: 205 LLVSSGVLKTYESAVEKGLTVFAPSDEAFKAEG 237

[Close]

BLAST of CsGy5G010120 vs. Swiss-Prot
Match: sp|Q9LZX4|FLA10_ARATH (Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana OX=3702 GN=FLA10 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.0e-04
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 3   LIVSNDVIKTYESAVEKGLTIFASNDEAFKTDG 36
           L+VS+ VIKT+ES VEKGLT+FA +DEAFK  G
Sbjct: 206 LLVSSGVIKTFESTVEKGLTVFAPSDEAFKARG 238

[Close]

BLAST of CsGy5G010120 vs. TrEMBL
Match: tr|A0A0A0KCV6|A0A0A0KCV6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G076800 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.0e-06
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 2   ALIVSNDVIKTYESAVEKGLTIFASNDEAFKTDG 36
           ALIVSN VIKTYESAVEKGLTIFA NDEAFK DG
Sbjct: 201 ALIVSNGVIKTYESAVEKGLTIFAPNDEAFKADG 234

[Close]

BLAST of CsGy5G010120 vs. TrEMBL
Match: tr|A0A1S3CBU5|A0A1S3CBU5_CUCME (fasciclin-like arabinogalactan protein 10 OS=Cucumis melo OX=3656 GN=LOC103499033 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.7e-06
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 2   ALIVSNDVIKTYESAVEKGLTIFASNDEAFKTDG 36
           +LIVSN VIKTYESAVEKGLTIFA NDEAFK DG
Sbjct: 201 SLIVSNGVIKTYESAVEKGLTIFAPNDEAFKADG 234

[Close]

BLAST of CsGy5G010120 vs. TrEMBL
Match: tr|A5BB66|A5BB66_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_011425 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.7e-04
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 2   ALIVSNDVIKTYESAVEKGLTIFASNDEAFKTDG 36
           +L+VS  VIK YESAVEKGLT+FA NDEAFK DG
Sbjct: 199 SLLVSTGVIKIYESAVEKGLTVFAPNDEAFKADG 232

[Close]

BLAST of CsGy5G010120 vs. TrEMBL
Match: tr|F6I327|F6I327_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_15s0048g01750 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.7e-04
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 2   ALIVSNDVIKTYESAVEKGLTIFASNDEAFKTDG 36
           +L+VS  VIK YESAVEKGLT+FA NDEAFK DG
Sbjct: 199 SLLVSTGVIKIYESAVEKGLTVFAPNDEAFKADG 232

[Close]

BLAST of CsGy5G010120 vs. TrEMBL
Match: tr|E3WHD6|E3WHD6_9ROSI (Fasciclin-like arabinogalactan protein OS=Vitis hybrid cultivar OX=241073 GN=Tam-FLA PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.7e-04
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 2   ALIVSNDVIKTYESAVEKGLTIFASNDEAFKTDG 36
           +L+VS  VIK YESAVEKGLT+FA NDEAFK DG
Sbjct: 199 SLLVSTGVIKIYESAVEKGLTVFAPNDEAFKADG 232

The following BLAST results are available for this feature:

BLAST of CsGy5G010120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004153890.1	4.5e-06	91.18	PREDICTED: fasciclin-like arabinogalactan protein 10 [Cucumis sativus] >KGN46232...	[more]
XP_008460132.1	1.0e-05	88.24	PREDICTED: fasciclin-like arabinogalactan protein 10 [Cucumis melo]	[more]
XP_022959190.1	1.7e-05	85.29	fasciclin-like arabinogalactan protein 10 [Cucurbita moschata]	[more]
XP_023006091.1	1.7e-05	85.29	fasciclin-like arabinogalactan protein 10 [Cucurbita maxima]	[more]
XP_023547830.1	1.7e-05	85.29	fasciclin-like arabinogalactan protein 10 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy5G010120 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45470.1	3.8e-07	72.73	FASCICLIN-like arabinogalactan protein 8	[more]
AT3G60900.1	5.5e-06	69.70	FASCICLIN-like arabinogalactan-protein 10	[more]

BLAST of CsGy5G010120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22126\|FLA8_ARATH	6.9e-06	72.73	Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana OX=3702 GN=FLA8...	[more]
sp\|Q9LZX4\|FLA10_ARATH	1.0e-04	69.70	Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana OX=3702 GN=FLA...	[more]

BLAST of CsGy5G010120 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCV6\|A0A0A0KCV6_CUCSA	3.0e-06	91.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G076800 PE=4 SV=1	[more]
tr\|A0A1S3CBU5\|A0A1S3CBU5_CUCME	6.7e-06	88.24	fasciclin-like arabinogalactan protein 10 OS=Cucumis melo OX=3656 GN=LOC10349903...	[more]
tr\|A5BB66\|A5BB66_VITVI	3.7e-04	76.47	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_011425 PE=4 SV=1	[more]
tr\|F6I327\|F6I327_VITVI	3.7e-04	76.47	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_15s0048g01750 PE=4 SV=...	[more]
tr\|E3WHD6\|E3WHD6_9ROSI	3.7e-04	76.47	Fasciclin-like arabinogalactan protein OS=Vitis hybrid cultivar OX=241073 GN=Tam...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G010120.1	CsGy5G010120.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G010120	Wax gourd	cgybwgoB490
CsGy5G010120	Cucurbita maxima (Rimu)	cgybcmaB664
CsGy5G010120	Cucurbita moschata (Rifu)	cgybcmoB641
CsGy5G010120	Cucurbita pepo (Zucchini)	cgybcpeB642
CsGy5G010120	Cucumber (Chinese Long) v2	cgybcuB232
CsGy5G010120	Melon (DHL92) v3.5.1	cgybmeB314
CsGy5G010120	Melon (DHL92) v3.5.1	cgybmeB328
CsGy5G010120	Melon (DHL92) v3.6.1	cgybmedB313
CsGy5G010120	Wild cucumber (PI 183967)	cgybcpiB235
CsGy5G010120	Silver-seed gourd	carcgybB0191
CsGy5G010120	Cucumber (Chinese Long) v3	cgybcucB232