CsGy5G009720 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G009720
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	cyclin-J18 isoform X2
Location	Chr5 : 8465795 .. 8466524 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGAAGAAGGAGAGCAACTATGGAGAGTGAGATGTTACCGGTTCTCAGAAGTAGCGTCGTCAAATTTCTAATTCAATCTGCTCATGTGAATCTTCACGCCCAACAATCTTTCTTAAATTTCATTTTAACTTCGCACAATCGAACGCTGATGAACATCAAATTTCAGATTCCAAATCTTCACTTCCCTAATTTCCACTTCTACTTTTACGGATTCTTCTTTCCTCCTCCTTTCACTCACTTTTGTTTCTGTTTTGAATTGATTTTCTTGCAAGGATCTCGAAGTGCCTCCGATCGTCAAGTATTCTGCGTTGTCGCTTTTCGCTGATAGATTCTACTCATCCATTTCTGGGTAATTCTTACCTTTTTTTGGTTCTTAATGCATTCAATTTTGTAACCATCTAGATGAATAAACAGTATTCTAGTTGAATGGGTGCACAACATTTTTACAGGAATGTGAAGGATATCAACGACCGGAGCTATACTTTTTCAATTTTAGCTCGGTTTTACTGGTGTTGCTGGCTTGATGTCATGAATGTTTCTGGTGTTTGAAATAGGATTCGGATTGTTGTCATTTCCTAATTAACAATTGGAGAAATTATATATTTGTTATCATTCTCTCTTCGAGTGCCCCTGTCTTTGCCTTCAGGAAGATTGCAGCTAATCTAATCATAATTTTGTCTAGCCTTTGTCGTATGAAATTTGCATCCATATTAGCAGCGATTTGA

mRNA sequence

ATGGTGGGAAGAAGGAGAGCAACTATGGAGAGTGAGATGTTACCGGTTCTCAGAAGTAGCGTCGTCAAATTTCTAATTCAATCTGCTCATGATCTCGAAGTGCCTCCGATCGTCAAGTATTCTGCGTTGTCGCTTTTCGCTGATAGATTCTACTCATCCATTTCTGGGAATGTGAAGGATATCAACGACCGGAGCTATACTTTTTCAATTTTAGCTCGGTTTTACTGGTGTTGCTGGCTTGATGTCATGAATGTTTCTGGTGATTCGGATTGTTGTCATTTCCTAATTAACAATTGGAGAAATTATATATTTGTTATCATTCTCTCTTCGAGTGCCCCTGTCTTTGCCTTCAGGAAGATTGCAGCTAATCTAATCATAATTTTGTCTAGCCTTTGTCGTATGAAATTTGCATCCATATTAGCAGCGATTTGA

Coding sequence (CDS)

ATGGTGGGAAGAAGGAGAGCAACTATGGAGAGTGAGATGTTACCGGTTCTCAGAAGTAGCGTCGTCAAATTTCTAATTCAATCTGCTCATGATCTCGAAGTGCCTCCGATCGTCAAGTATTCTGCGTTGTCGCTTTTCGCTGATAGATTCTACTCATCCATTTCTGGGAATGTGAAGGATATCAACGACCGGAGCTATACTTTTTCAATTTTAGCTCGGTTTTACTGGTGTTGCTGGCTTGATGTCATGAATGTTTCTGGTGATTCGGATTGTTGTCATTTCCTAATTAACAATTGGAGAAATTATATATTTGTTATCATTCTCTCTTCGAGTGCCCCTGTCTTTGCCTTCAGGAAGATTGCAGCTAATCTAATCATAATTTTGTCTAGCCTTTGTCGTATGAAATTTGCATCCATATTAGCAGCGATTTGA

Protein sequence

MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISGNVKDINDRSYTFSILARFYWCCWLDVMNVSGDSDCCHFLINNWRNYIFVIILSSSAPVFAFRKIAANLIIILSSLCRMKFASILAAI

Homology

[Close]

BLAST of CsGy5G009720 vs. NCBI nr
Match: KGN50776.1 (hypothetical protein Csa_5G256690 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-21
Identity = 60/66 (90.91%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 1  MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISGNVKD 60
          MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISG    
Sbjct: 1  MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISGFTSS 60

Query: 61 INDRSY 67
           ND SY
Sbjct: 61 -NDSSY 65

[Close]

BLAST of CsGy5G009720 vs. NCBI nr
Match: XP_011655068.1 (PREDICTED: cyclin-J18 isoform X1 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-21
Identity = 60/66 (90.91%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 1  MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISGNVKD 60
          MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISG    
Sbjct: 1  MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISGFTSS 60

Query: 61 INDRSY 67
           ND SY
Sbjct: 61 -NDSSY 65

[Close]

BLAST of CsGy5G009720 vs. NCBI nr
Match: XP_011655069.1 (PREDICTED: cyclin-J18 isoform X2 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-21
Identity = 60/66 (90.91%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 1  MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISGNVKD 60
          MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISG    
Sbjct: 1  MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISGFTSS 60

Query: 61 INDRSY 67
           ND SY
Sbjct: 61 -NDSSY 65

[Close]

BLAST of CsGy5G009720 vs. NCBI nr
Match: XP_011655070.1 (PREDICTED: cyclin-J18 isoform X3 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-21
Identity = 60/66 (90.91%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 1  MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISGNVKD 60
          MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISG    
Sbjct: 1  MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISGFTSS 60

Query: 61 INDRSY 67
           ND SY
Sbjct: 61 -NDSSY 65

[Close]

BLAST of CsGy5G009720 vs. NCBI nr
Match: XP_011655071.1 (PREDICTED: cyclin-J18 isoform X4 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-21
Identity = 60/66 (90.91%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 1  MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISGNVKD 60
          MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISG    
Sbjct: 1  MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISGFTSS 60

Query: 61 INDRSY 67
           ND SY
Sbjct: 61 -NDSSY 65

[Close]

BLAST of CsGy5G009720 vs. TAIR10
Match: AT2G01905.1 (cyclin J18)

HSP 1 Score: 48.9 bits (115), Expect = 3.0e-06
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 17 LRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRF 51
          LR  +V+FLIQS   LE+PPIVKYSALSLF DRF
Sbjct: 8  LRRRLVEFLIQSTTLLELPPIVKYSALSLFFDRF 41

[Close]

BLAST of CsGy5G009720 vs. Swiss-Prot
Match: sp|Q9C5X2|CCJ18_ARATH (Cyclin-J18 OS=Arabidopsis thaliana OX=3702 GN=CYCJ18 PE=2 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 5.4e-05
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 17 LRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRF 51
          LR  +V+FLIQS   LE+PPIVKYSALSLF DRF
Sbjct: 8  LRRRLVEFLIQSTTLLELPPIVKYSALSLFFDRF 41

[Close]

BLAST of CsGy5G009720 vs. TrEMBL
Match: tr|A0A0A0KSP7|A0A0A0KSP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G256690 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.1e-21
Identity = 60/66 (90.91%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 1  MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISGNVKD 60
          MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISG    
Sbjct: 1  MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISGFTSS 60

Query: 61 INDRSY 67
           ND SY
Sbjct: 61 -NDSSY 65

[Close]

BLAST of CsGy5G009720 vs. TrEMBL
Match: tr|A0A1S3C4A5|A0A1S3C4A5_CUCME (cyclin-J18 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496684 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.4e-18
Identity = 53/66 (80.30%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 1  MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISGNVKD 60
          MV RRRATM+SE LP+LR +VVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISG    
Sbjct: 1  MVERRRATMDSETLPILRINVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISGFTSS 60

Query: 61 INDRSY 67
           ND  Y
Sbjct: 61 -NDSRY 65

[Close]

BLAST of CsGy5G009720 vs. TrEMBL
Match: tr|A0A1S3C472|A0A1S3C472_CUCME (cyclin-J18 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496684 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.4e-18
Identity = 53/66 (80.30%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 1  MVGRRRATMESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISGNVKD 60
          MV RRRATM+SE LP+LR +VVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISG    
Sbjct: 1  MVERRRATMDSETLPILRINVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISGFTSS 60

Query: 61 INDRSY 67
           ND  Y
Sbjct: 61 -NDSRY 65

[Close]

BLAST of CsGy5G009720 vs. TrEMBL
Match: tr|A0A1S3YU29|A0A1S3YU29_TOBAC (cyclin-J18-like OS=Nicotiana tabacum OX=4097 GN=LOC107779670 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-07
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 9  MESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISGNVKDINDRSYTF 68
          M+ E+   LR  V +FLIQSAH+L+V PIVKYSALSLF DRFY S+    + IND + T+
Sbjct: 1  MKKEVCCCLRGRVAEFLIQSAHELQVSPIVKYSALSLFVDRFYPSLISR-QGINDAAKTW 59

[Close]

BLAST of CsGy5G009720 vs. TrEMBL
Match: tr|A0A1U7XIE0|A0A1U7XIE0_NICSY (cyclin-J18 OS=Nicotiana sylvestris OX=4096 GN=LOC104238987 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-07
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 9  MESEMLPVLRSSVVKFLIQSAHDLEVPPIVKYSALSLFADRFYSSISGNVKDINDRSYTF 68
          M+ E+   LR  V +FLIQSAH+L+V PIVKYSALSLF DRFY S+    + IND + T+
Sbjct: 1  MKKEVCCCLRGRVAEFLIQSAHELQVSPIVKYSALSLFVDRFYPSLISR-QGINDAAKTW 59

The following BLAST results are available for this feature:

BLAST of CsGy5G009720 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50776.1	1.6e-21	90.91	hypothetical protein Csa_5G256690 [Cucumis sativus]	[more]
XP_011655068.1	1.6e-21	90.91	PREDICTED: cyclin-J18 isoform X1 [Cucumis sativus]	[more]
XP_011655069.1	1.6e-21	90.91	PREDICTED: cyclin-J18 isoform X2 [Cucumis sativus]	[more]
XP_011655070.1	1.6e-21	90.91	PREDICTED: cyclin-J18 isoform X3 [Cucumis sativus]	[more]
XP_011655071.1	1.6e-21	90.91	PREDICTED: cyclin-J18 isoform X4 [Cucumis sativus]	[more]

BLAST of CsGy5G009720 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01905.1	3.0e-06	73.53	cyclin J18	[more]

BLAST of CsGy5G009720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C5X2\|CCJ18_ARATH	5.4e-05	73.53	Cyclin-J18 OS=Arabidopsis thaliana OX=3702 GN=CYCJ18 PE=2 SV=2	[more]

BLAST of CsGy5G009720 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KSP7\|A0A0A0KSP7_CUCSA	1.1e-21	90.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G256690 PE=4 SV=1	[more]
tr\|A0A1S3C4A5\|A0A1S3C4A5_CUCME	5.4e-18	80.30	cyclin-J18 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496684 PE=4 SV=1	[more]
tr\|A0A1S3C472\|A0A1S3C472_CUCME	5.4e-18	80.30	cyclin-J18 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496684 PE=4 SV=1	[more]
tr\|A0A1S3YU29\|A0A1S3YU29_TOBAC	3.3e-07	56.67	cyclin-J18-like OS=Nicotiana tabacum OX=4097 GN=LOC107779670 PE=4 SV=1	[more]
tr\|A0A1U7XIE0\|A0A1U7XIE0_NICSY	3.3e-07	56.67	cyclin-J18 OS=Nicotiana sylvestris OX=4096 GN=LOC104238987 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR039361	Cyclin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G009720.1	CsGy5G009720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039361	Cyclin	PANTHER	PTHR10177	CYCLINE	coord: 9..57
None	No IPR available	PANTHER	PTHR10177:SF263	CYCLIN-J18	coord: 9..57

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G009720	Cucurbita maxima (Rimu)	cgybcmaB664
CsGy5G009720	Cucurbita maxima (Rimu)	cgybcmaB687
CsGy5G009720	Cucurbita moschata (Rifu)	cgybcmoB641
CsGy5G009720	Cucurbita moschata (Rifu)	cgybcmoB661
CsGy5G009720	Cucurbita pepo (Zucchini)	cgybcpeB642
CsGy5G009720	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G009720	Cucumber (Chinese Long) v2	cgybcuB231
CsGy5G009720	Bottle gourd (USVL1VR-Ls)	cgyblsiB311
CsGy5G009720	Melon (DHL92) v3.5.1	cgybmeB312
CsGy5G009720	Melon (DHL92) v3.5.1	cgybmeB313
CsGy5G009720	Melon (DHL92) v3.6.1	cgybmedB311
CsGy5G009720	Melon (DHL92) v3.6.1	cgybmedB319
CsGy5G009720	Watermelon (Charleston Gray)	cgybwcgB329
CsGy5G009720	Watermelon (97103) v1	cgybwmB410
CsGy5G009720	Wild cucumber (PI 183967)	cgybcpiB235
CsGy5G009720	Silver-seed gourd	carcgybB0364
CsGy5G009720	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G009720	Watermelon (97103) v2	cgybwmbB342