CsGy5G009570 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G009570
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Arginase
Location	Chr5 : 8123415 .. 8125655 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGCTAGAGAATTTGGCCTTAAGGATGTATTTTGTATTTTGTGTTATGAATGTATGTTAATATAGAAGGGTGTAAAGACATGTGATGGAAGGTTTCAGGGTTTGTGAAAGCATATTTGAAGCATTTGCTACTTGTTGATGGTAAAACTTGTGGTCATGGTTGATGTCTCCCTTCTCATCATCTCCATCGTCATCACCTTCTTCCACATAATCATTTCCATCGTTAGCGTCTCCAGATGAAATTTTGAGATTCTGAGTCTGGTTATAAATTTTAAAAAAAATTATCAAGTTTAAGTGATCACGTAACAAGACTAAATGATCGTGTAACAATTCCATATGATCATGTAACTAGTCTAAATGATTGTGTCATATGTCTTCTCGATTGTTAATAAGTCTAATCAATCGTTCAAAATTATTACACGATCGTTTAGGTTCACATAACCACATGTGAACTTATGAAATCTCAAGAGTATGTGAAGCATAACTCAACCAACCTTTAAAGCATCTACTTGATTTTCGCCAATTCGATTTGTTGGAATTGACAGTATCAGACATCTTACAGAGACTATATCAGTTAGTCTCGACAAATCCTTTCGAGCACCAGACGTTTATAATTTAAGATGTTTATAGGATCGTGAATGCATGTGTCTTCGTGAGAACTTGTCACCTATCTTTGAATCCTTGCCTTGGGTATTTGGTTTTGTATTCACTCTATATTCCATCTCCATATGTATCTCTGGTCTACTTGAGGATTGTGGTGAATGGTTAGCATCATTAACATTAAACTCTGATCGGATCAGGGGATTTGAAGATTGCTAAGTTTCTAAATCGTCGTGATCACAGATGTCTCATCATGATGAGTACTAGCACATGTGTCCATGCATGGGAGATTTTCATTCTCTTGTATTCAAGCTTCTTTCAAAAATATTTCGTCAAACGATAGCTTAAGCTTGGATATAACTATAGTTTTCATAAAAACCAGTAGTTATAAGGCCACATGGTACCGTTAAAAGAAAGTGGAACAAATAAAGGCAAAAAAATGACTAGAACAACTAAACGATCATTTAACGTAACATACTAAACGAACTTAACGATTTAGTTAGTTAATATAAATGATCGTTTAGTTATGACTATACTTACTTTCTTTGTCTAAAATACCTTTCTATCAACCATCTTGTATGATGAAGATTGTGTACAAATCCACCTTAGCATTCATGGAACTACCCGCTTGCTTGATTTTGTGGCTATGAACTTTCTTGAACTTGACAGATTTTATAAGCCCACACCTAAATGACAATAATTGAAGCATTATAAAAACACATTTTTTTTTGTTCACAATCAACCAACACAAATATCTAAAAATAAATTAAAATCACCTGAAAAGCAAGTGCATAGCCTTTGGTGTTGTAGAATGGTGAATTGCTTTGGGATTATCTATCCTTTTCAATTTGTATGCATCATTTTTTCTACGTATAATCGTTTTCAAACTGTGCAACAAAAATTTGATCAACACAGACAACCAAATCCTAGTTCCTAGACACTTAATGGTCGTCAATAATCCCTAATGTGTTCACATCCAACTGAGTTTTCTTGTCCTTCCCCACCATTGCAACCTTAACAAACAATGCCAAAGCAACCTTTACAACTTCTTCGTCAGTTGTAAAATTGCATTTTTTGAAGACTTCCTCAACCTCCAAACATGTTTTCGATTTCTCCTTTGAGAGCATGGGTCCTCCAAGTATGAGCTTCCATAGCTTATCTCCGCATGTGTCTCTTTTTCAATTGTTACATTAGTCGGCCACAATCCAACTACCAGGTTAAGTTCTTCTTGTGAGAATATAACTTTCTAAATCAAAACAACGAAACTTACAAAGTCTGACCTCTCCTCCCTTACTTCCCTCGATAAGAAGTGGTGGGACAACTAGTCATTAAAGACCATGTCAACTTTTTTAGCAATGGTCTAAGTACAATTTTATTGAACATTTTCATATATTTGTTTGTTAGTTTATCCTTTATCACGGTATGGATCTTGTGTACTTGGCATGAAACAGTGGCAGAGAAATATTTGTCCTTCCATACCAGCCATCCTAACAAGCTGATCATAGGGAGAAAAAAATACAAACGTCAATTATTAATATATAAGTGTATGATTCATAAATGGCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGACCCGGGTTCGATTCCCGGCTGGTGCATTTCTTTTTGA

mRNA sequence

ACGCTAGAGAATTTGGCCTTAAGGATGTATTTTGTATTTTGTGTTATGAATGTTCACATAACCACATGTGAACTTATGAAATCTCAAGATATCAGACATCTTACAGAGACTATATCAGTTAGTCTCGACAAATCCTTTCGAGCACCAGACGTTTATAATTTAAGATGGGATTTGAAGATTGCTAAGTTTCTAAATCGTCGTGATCACAGATGTCTCATCATGATGAAAAGTGGAACAAATAAAGGCAAAAAAATGACTAGAACAACTAAACGATCATTTAACAATGGTGAATTGCTTTGGGATTATCTATCCTTTTCAATTTCTTATCTCCGCATGTGTCTCTTTTTCAATTGTTACATTAGTCGGCCACAATCCAACTACCAGGTTAAGTTCTTCTTCAATGGTCTAAGTACAATTTTATTGAACATTTTCATATATTTGTTTGTTAGTTTATCCTTTATCACGGTATGGATCTTGTGTACTTGGCATGAAACAGTGGCAGAGAAATATTTGTCCTTCCATACCAGCCATCCTAACAAGCTGATCATAGGGAGAAAAAAATACAAACGTCAATTATTAATATATAAGTGTATGATTCATAAATGGCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGACCCGGGTTCGATTCCCGGCTGGTGCATTTCTTTTTGA

Coding sequence (CDS)

ACGCTAGAGAATTTGGCCTTAAGGATGTATTTTGTATTTTGTGTTATGAATGTTCACATAACCACATGTGAACTTATGAAATCTCAAGATATCAGACATCTTACAGAGACTATATCAGTTAGTCTCGACAAATCCTTTCGAGCACCAGACGTTTATAATTTAAGATGGGATTTGAAGATTGCTAAGTTTCTAAATCGTCGTGATCACAGATGTCTCATCATGATGAAAAGTGGAACAAATAAAGGCAAAAAAATGACTAGAACAACTAAACGATCATTTAACAATGGTGAATTGCTTTGGGATTATCTATCCTTTTCAATTTCTTATCTCCGCATGTGTCTCTTTTTCAATTGTTACATTAGTCGGCCACAATCCAACTACCAGGTTAAGTTCTTCTTCAATGGTCTAAGTACAATTTTATTGAACATTTTCATATATTTGTTTGTTAGTTTATCCTTTATCACGGTATGGATCTTGTGTACTTGGCATGAAACAGTGGCAGAGAAATATTTGTCCTTCCATACCAGCCATCCTAACAAGCTGATCATAGGGAGAAAAAAATACAAACGTCAATTATTAATATATAAGTGTATGATTCATAAATGGCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGACCCGGGTTCGATTCCCGGCTGGTGCATTTCTTTTTGA

Protein sequence

TLENLALRMYFVFCVMNVHITTCELMKSQDIRHLTETISVSLDKSFRAPDVYNLRWDLKIAKFLNRRDHRCLIMMKSGTNKGKKMTRTTKRSFNNGELLWDYLSFSISYLRMCLFFNCYISRPQSNYQVKFFFNGLSTILLNIFIYLFVSLSFITVWILCTWHETVAEKYLSFHTSHPNKLIIGRKKYKRQLLIYKCMIHKWHQWSSGRIVPCHGTDPGSIPGWCISF

Homology

[Close]

BLAST of CsGy5G009570 vs. NCBI nr
Match: RDX71428.1 (hypothetical protein CR513_49231, partial [Mucuna pruriens])

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-07
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 199 IHKWHQWSSGRIVPCHGTDPGSIPGWCI 227
           I++ HQWSSGRIVPCHGTDPGSIPGWCI
Sbjct: 22  IYQQHQWSSGRIVPCHGTDPGSIPGWCI 49

[Close]

BLAST of CsGy5G009570 vs. NCBI nr
Match: XP_011464758.1 (PREDICTED: BI1-like protein [Fragaria vesca subsp. vesca])

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-06
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 203 HQWSSGRIVPCHGTDPGSIPGWCIS 228
           HQWSSGRIVPCH TDPGSIPGWCIS
Sbjct: 11  HQWSSGRIVPCHATDPGSIPGWCIS 35

[Close]

BLAST of CsGy5G009570 vs. NCBI nr
Match: KHN25557.1 (Arginase, partial [Glycine soja])

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-05
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = 0


Query: 205 WSSGRIVPCHGTDPGSIPGWCI 227
           WSSGRIVPCHGTDPGSIPGWCI
Sbjct: 159 WSSGRIVPCHGTDPGSIPGWCI 180

[Close]

BLAST of CsGy5G009570 vs. NCBI nr
Match: AES89661.1 (hypothetical protein MTR_4g078300 [Medicago truncatula])

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-05
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = 0


Query: 203 HQWSSGRIVPCHGTDPGSIPGW 225
           HQWSSGRIVPCHGTDPGSIPGW
Sbjct: 8   HQWSSGRIVPCHGTDPGSIPGW 29

[Close]

BLAST of CsGy5G009570 vs. NCBI nr
Match: PIA54547.1 (hypothetical protein AQUCO_00900838v1 [Aquilegia coerulea])

HSP 1 Score: 55.8 bits (133), Expect = 2.2e-04
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 199 IHKWHQWSSGRIVPCHGTDPGSIPG 224
           ++K HQWSSGRIVPCHGTDPGSIPG
Sbjct: 1   MNKKHQWSSGRIVPCHGTDPGSIPG 25

[Close]

BLAST of CsGy5G009570 vs. TrEMBL
Match: tr|G7JTT2|G7JTT2_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11443299 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = 0


Query: 203 HQWSSGRIVPCHGTDPGSIPGW 225
           HQWSSGRIVPCHGTDPGSIPGW
Sbjct: 8   HQWSSGRIVPCHGTDPGSIPGW 29

[Close]

BLAST of CsGy5G009570 vs. TrEMBL
Match: tr|A0A0B2R0V1|A0A0B2R0V1_GLYSO (Arginase (Fragment) OS=Glycine soja OX=3848 GN=glysoja_035685 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = 0


Query: 205 WSSGRIVPCHGTDPGSIPGWCI 227
           WSSGRIVPCHGTDPGSIPGWCI
Sbjct: 159 WSSGRIVPCHGTDPGSIPGWCI 180

[Close]

BLAST of CsGy5G009570 vs. TrEMBL
Match: tr|A0A2G5EG38|A0A2G5EG38_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_00900838v1 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 199 IHKWHQWSSGRIVPCHGTDPGSIPG 224
           ++K HQWSSGRIVPCHGTDPGSIPG
Sbjct: 1   MNKKHQWSSGRIVPCHGTDPGSIPG 25

[Close]

BLAST of CsGy5G009570 vs. TrEMBL
Match: tr|A0A2K1IUS3|A0A2K1IUS3_PHYPA (Uncharacterized protein OS=Physcomitrella patens subsp. patens OX=3218 GN=PHYPA_024962 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-04
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 0


Query: 203 HQWSSGRIVPCHGTDPGSIPGWC 226
           H+WSSGRIVPCHGTDPGSIPG C
Sbjct: 104 HRWSSGRIVPCHGTDPGSIPGRC 126

[Close]

BLAST of CsGy5G009570 vs. TrEMBL
Match: tr|A9U4U4|A9U4U4_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens OX=3218 GN=PHYPADRAFT_102124 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-04
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 0


Query: 203 HQWSSGRIVPCHGTDPGSIPGWC 226
           H+WSSGRIVPCHGTDPGSIPG C
Sbjct: 227 HRWSSGRIVPCHGTDPGSIPGRC 249

The following BLAST results are available for this feature:

BLAST of CsGy5G009570 vs. NCBI nr


Match Name	E-value	Identity	Description
RDX71428.1	2.7e-07	89.29	hypothetical protein CR513_49231, partial [Mucuna pruriens]	[more]
XP_011464758.1	1.8e-06	96.00	PREDICTED: BI1-like protein [Fragaria vesca subsp. vesca]	[more]
KHN25557.1	3.3e-05	100.00	Arginase, partial [Glycine soja]	[more]
AES89661.1	3.3e-05	100.00	hypothetical protein MTR_4g078300 [Medicago truncatula]	[more]
PIA54547.1	2.2e-04	88.00	hypothetical protein AQUCO_00900838v1 [Aquilegia coerulea]	[more]

BLAST of CsGy5G009570 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G009570 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G009570 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|G7JTT2\|G7JTT2_MEDTR	2.2e-05	100.00	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11443299 PE=4 SV=1	[more]
tr\|A0A0B2R0V1\|A0A0B2R0V1_GLYSO	2.2e-05	100.00	Arginase (Fragment) OS=Glycine soja OX=3848 GN=glysoja_035685 PE=3 SV=1	[more]
tr\|A0A2G5EG38\|A0A2G5EG38_AQUCA	1.4e-04	88.00	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_00900838v1 PE=4...	[more]
tr\|A0A2K1IUS3\|A0A2K1IUS3_PHYPA	2.4e-04	91.30	Uncharacterized protein OS=Physcomitrella patens subsp. patens OX=3218 GN=PHYPA_...	[more]
tr\|A9U4U4\|A9U4U4_PHYPA	2.4e-04	91.30	Predicted protein OS=Physcomitrella patens subsp. patens OX=3218 GN=PHYPADRAFT_1...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G009570.1	CsGy5G009570.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G009570	Cucurbita maxima (Rimu)	cgybcmaB664
CsGy5G009570	Cucurbita moschata (Rifu)	cgybcmoB641
CsGy5G009570	Cucurbita pepo (Zucchini)	cgybcpeB642
CsGy5G009570	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G009570	Cucumber (Chinese Long) v2	cgybcuB231
CsGy5G009570	Bottle gourd (USVL1VR-Ls)	cgyblsiB311
CsGy5G009570	Melon (DHL92) v3.5.1	cgybmeB312
CsGy5G009570	Melon (DHL92) v3.6.1	cgybmedB311
CsGy5G009570	Watermelon (Charleston Gray)	cgybwcgB329
CsGy5G009570	Watermelon (97103) v1	cgybwmB410
CsGy5G009570	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G009570	Watermelon (97103) v2	cgybwmbB342
CsGy5G009570	Wax gourd	cgybwgoB438