CsGy5G009480 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G009480
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Unknown Protein
Location	Chr5 : 8047182 .. 8048417 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCCCGAAAACCATTGATCCTCTTCTTGTTTTGCATTTTGAGTGTGTTTATGTTAGTGAAGGCAAAACAAGATACAACCATCAACAACTTTGTTCAAAATACTTGCAGCTGAACTAATGATGAACTAAAAAACTTGTGTCTTTCCCTAGTAAACTCAGACCCTCGTGAAGATTTGAAGACAAATTTGACTGGTTTGTTAACGATATTTGTGAATCATAGCATCACCGATATCAACAATGACATTTTGTTCCTTAACCATGAGCTCGCTTCAAACAATGTCAGTCGTGACAGTAAAGAAATTTATTTGGTTTGTGCGGATAACTATGTAATGGGACTGAGTGATTTACAAGAAACTTTGGAAAAACTAATAAAAAGAAGGGGTAGTGTGGATGTGTTTTACTCACTAATGAACCACACATATGATCTGTTAACAGGATGTTTGGATGATTTTGAAGGGATTTATACTATCCCTCGTGAGTGGCAATCTCGTTACGAAGCTTCTTATGCATTATTGGATCTTTCACTGTCAATCATAAATCTCATCAAATGTAATAGCCCTGATGAGTGCAACAAATAATTTGTTAATTAAAATTCAGTTCTTGATTAGTATTCCATAATAATAATTTTGAGGATGATGTTAATTTTATGGCTTATATATTTTTGTTACCTTCTGTTTATAACCGGATTAGTATTTTCAAATTTTCATATCAGATAAAATAAAACATAAAATGATAAACAAAATTCTTAGTTATAATTGCACAATCCATACGTAAAACAAAGTAATTAACAAAGTGTACTGAGTGTTAAAAGCAACCAAAATGAGAAAGAAAGCCAATTTACCACAAAAAAGAAAACATGAAACAAGAAAGATCTAAAGAAACAACAGTGATTCCGTTTATCCATTAAAAGTTAAGCTCTCTGTACTTAAGCTTCTCCTAATGGTGTGTGATTCCCATTCAATGTGACTTAAACTCTTCTGATTATAAAAACTCCCTCTCAACTTCTTGAAAGCCCATATAGAAATATAAAAGAAAAAAAATACAACAACTAACTAAAACAAACAGGCTATGATGCACAACAATTGCCAGTCACCAACGTTCTCGGCGATGCAGTTGAGTGTTTTGAAAAATTTGATGGAATTCCTGTCCCCTCCCGAGTGGCAATCTCGTTTCAATGCCTCTCATGCATGAGTAGATCTCTCGTTGGCAATGATAAATCTTATTACTTGTAA

mRNA sequence

ATGGGTTCCCGAAAACCATTGATCCTCTTCTTGTTTTGCATTTTGATAAACTCAGACCCTCGTGAAGATTTGAAGACAAATTTGACTGGTTTGTTAACGATATTTGTGAATCATAGCATCACCGATATCAACAATGACATTTTGTTCCTTAACCATGAGCTCGCTTCAAACAATGTCAGTCGTGACAGTAAAGAAATTTATTTGGTTTGTGCGGATAACTATGTAATGGGACTGAGTGATTTACAAGAAACTTTGGAAAAACTAATAAAAAGAAGGGGTAGTGTGGATGTGTTTTACTCACTAATGAACCACACATATGATCTGTTAACAGGATGTTTGGATGATTTTGAAGGGATTTATACTATCCCTCGCTATGATGCACAACAATTGCCAGTCACCAACGTTCTCGGCGATGCAGTTGAGTGTTTTGAAAAATTTGATGGAATTCCTGTCCCCTCCCGAGTGGCAATCTCGTTTCAATGCCTCTCATGCATGAGTAGATCTCTCGTTGGCAATGATAAATCTTATTACTTGTAA

Coding sequence (CDS)

ATGGGTTCCCGAAAACCATTGATCCTCTTCTTGTTTTGCATTTTGATAAACTCAGACCCTCGTGAAGATTTGAAGACAAATTTGACTGGTTTGTTAACGATATTTGTGAATCATAGCATCACCGATATCAACAATGACATTTTGTTCCTTAACCATGAGCTCGCTTCAAACAATGTCAGTCGTGACAGTAAAGAAATTTATTTGGTTTGTGCGGATAACTATGTAATGGGACTGAGTGATTTACAAGAAACTTTGGAAAAACTAATAAAAAGAAGGGGTAGTGTGGATGTGTTTTACTCACTAATGAACCACACATATGATCTGTTAACAGGATGTTTGGATGATTTTGAAGGGATTTATACTATCCCTCGCTATGATGCACAACAATTGCCAGTCACCAACGTTCTCGGCGATGCAGTTGAGTGTTTTGAAAAATTTGATGGAATTCCTGTCCCCTCCCGAGTGGCAATCTCGTTTCAATGCCTCTCATGCATGAGTAGATCTCTCGTTGGCAATGATAAATCTTATTACTTGTAA

Protein sequence

MGSRKPLILFLFCILINSDPREDLKTNLTGLLTIFVNHSITDINNDILFLNHELASNNVSRDSKEIYLVCADNYVMGLSDLQETLEKLIKRRGSVDVFYSLMNHTYDLLTGCLDDFEGIYTIPRYDAQQLPVTNVLGDAVECFEKFDGIPVPSRVAISFQCLSCMSRSLVGNDKSYYL

Homology

[Close]

BLAST of CsGy5G009480 vs. NCBI nr
Match: XP_023511468.1 (uncharacterized protein LOC111776286 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 88.2 bits (217), Expect = 3.1e-14
Identity = 55/150 (36.67%), Postives = 88/150 (58.67%), Query Frame = 0


Query: 9   LFLFCI-LINSDPREDLKTNLTGLLTIFVNHSITDINNDILFLNHELASNNVSRDSKEIY 68
           L+  CI  I+ DPREDLK+NLTG LTIFVNH+I + N++++FL  E+ S  +  ++K +Y
Sbjct: 25  LYKLCIPEIDLDPREDLKSNLTGFLTIFVNHTINNFNDNLIFLQREIKSGKLDAETKLMY 84

Query: 69  LVCADNYVMGLSDLQETLEKLIKRRGSVDVFYSLMNHTYD-LLTGCLDDFEGIYTIP--- 128
             C++++ MG + LQE++  L+ + G+    Y L   + D  ++ C DDFE     P   
Sbjct: 85  DKCSESFGMGYTKLQESMHILLTQPGT--NVYDLPTMSVDKRISVCFDDFEDDPIPPEWQ 144

Query: 129 -RYDAQQLPVTNVLG--DAVECFEKFDGIP 151
            RY      V+ +LG  + ++C  +   IP
Sbjct: 145 SRYKTSWNLVSLILGTSNLIKCNREASCIP 172

[Close]

BLAST of CsGy5G009480 vs. NCBI nr
Match: XP_022137307.1 (uncharacterized protein LOC111008804 [Momordica charantia])

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-13
Identity = 46/125 (36.80%), Postives = 74/125 (59.20%), Query Frame = 0


Query: 13  CI-LINSDPREDLKTNLTGLLTIFVNHSITDINNDILFLNHELASNNVSRDSKEIYLVCA 72
           CI +I+SDP +DLK NL+GLL IF+NHSI +  ++ L+L  +L  +++ +D +  + VC 
Sbjct: 29  CIDVIDSDPHQDLKLNLSGLLAIFINHSIDNATDNHLYLMEQLKRSDLDKDIRYTFNVCV 88

Query: 73  DNYVMGLSDLQETLEKLIKRRGSVDVFYSLMNHTYDLLTGCLDDFEGIYTIPRYDAQQLP 132
           + Y  GL  L+ +LE L+K     D    +++  +D +  C DDFE     P + A  LP
Sbjct: 89  EQYERGLDILKSSLEALLK--NDKDDLGLILSDAFDKIVACEDDFESTPEPPSWLAHYLP 148

Query: 133 VTNVL 137
           +  +L
Sbjct: 149 LRKLL 151

The following BLAST results are available for this feature:

BLAST of CsGy5G009480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023511468.1	3.1e-14	36.67	uncharacterized protein LOC111776286 [Cucurbita pepo subsp. pepo]	[more]
XP_022137307.1	1.2e-13	36.80	uncharacterized protein LOC111008804 [Momordica charantia]	[more]

BLAST of CsGy5G009480 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G009480 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G009480 vs. TrEMBL


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR035513	Invertase/methylesterase_inhib

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G009480.1	CsGy5G009480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035513	Invertase/pectin methylesterase inhibitor domain superfamily	GENE3D	G3DSA:1.20.140.40		coord: 11..130 e-value: 7.9E-7 score: 31.0
IPR035513	Invertase/pectin methylesterase inhibitor domain superfamily	SUPERFAMILY	SSF101148	Plant invertase/pectin methylesterase inhibitor	coord: 25..121

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G009480	CSPI05G12010	Wild cucumber (PI 183967)	cgybcpiB236

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G009480	Cucurbita maxima (Rimu)	cgybcmaB664
CsGy5G009480	Cucurbita maxima (Rimu)	cgybcmaB666
CsGy5G009480	Cucurbita moschata (Rifu)	cgybcmoB641
CsGy5G009480	Cucurbita moschata (Rifu)	cgybcmoB646
CsGy5G009480	Cucurbita pepo (Zucchini)	cgybcpeB641
CsGy5G009480	Cucurbita pepo (Zucchini)	cgybcpeB642
CsGy5G009480	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G009480	Cucumber (Chinese Long) v2	cgybcuB231
CsGy5G009480	Bottle gourd (USVL1VR-Ls)	cgyblsiB311
CsGy5G009480	Melon (DHL92) v3.5.1	cgybmeB312
CsGy5G009480	Melon (DHL92) v3.6.1	cgybmedB311
CsGy5G009480	Watermelon (Charleston Gray)	cgybwcgB329
CsGy5G009480	Watermelon (97103) v1	cgybwmB410
CsGy5G009480	Silver-seed gourd	carcgybB0668
CsGy5G009480	Silver-seed gourd	carcgybB0732
CsGy5G009480	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G009480	Watermelon (97103) v2	cgybwmbB342