CsGy5G009080 (gene) Cucumber (Gy14) v2

Overview
NameCsGy5G009080
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionRNA-dependent RNA polymerase
LocationChr5 : 7131584 .. 7137666 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAGATAAAGTTTCAACCGATCATTTAAAGAAAACGAGTAGATATTGTTATAGATTAAAATCAAAAAGATTGATGAAATTGGATTGGAATCTATATTTTGTTGATTGATTTTTGTCAACAAATTAATCTATATTTATATGAGTGAGATGAAAGGAAATGAAGAATTAAAGAAAAAGACATTGGAGATATTTTAAATTTATTAAGGTATGTTCATATATTTGGGTTGGATTTGGTTTGGGGATGGATTTTCAGACAAAGATCAAACAAATTAAAAAATGGTTGATTTTCTCCAAATTCAATCCAATTCATTGGGTAAGTTTGGTTTGATTTGGTTTTACCCATTTTGAAACCACAAGGACTAAATATGATCCATCAAATTTGGTGACAGAAATATGTTTTTGTATTAAAAATGGTGATTTCACAAGAAAAAACCAAGAAAAATAGAGCAAGATGAAAAGGTTAACCAAAGGGTGCTATTTCTTTTTGACAATTTGACTGGTTACACCTCACTTGATCAGTCTCTACTTCACGATCCCTCGTCTCCCTCTGTATGGGCTCTCAAACGGTCAGACCAAAAGTTACGTTGGAATTACTGGCGCTGAAGCGATTTTCTTCTTTCAAAGCTCCAACAGTATGTTCTGTTCATCACTCCTTCTCCTTTTGCTTTCCTTTTCTTCTGGGTTTATGGCCTTTTGATGTTGCTTCAGTTTTTGACATTCCATTAAACCTCTTCTTGTAATTACCAACTAACTGGGGACTGGGCTTGCTGCTCTTGCAGTTGACTCTTCGCATTCCTCTGTTTTTACTCTGTTTTTACACTGTTTTTTGGTTTTGATTGCTCTACTGGTTCATATGGAAACTTCAAAATCCTAAAGTTTTCATTTCGGTTTATCGATTTGTGCCACTTGGAGGGGATTTTTCATGTTTTTTTTTTTTTTTAACTGTGGGTTTCTCTGTGTTTCTTCTGCTCATATCTTTTGTGCCTTTTAATTGTCTTTTCTTCCCAAATTCCCTTCAAGATCCTCAGGTTTTTGTACCCAGTGGAGGACATTTATGTTTTTATGTGTGTGCGTTGGACCTTTTTTCTTCTTCATCATTACATCATGCTATTTTTCTCATTTTCTTGGCGCTTTTGAATTTCTTTTCTTGAATTTTTTTTAGTTGGAGTTTGATCTAGGCGAGCACTCAGGTTGGAAACTCGAGCATTCACCTATATTCTGGGGCTGTCTGATTGTGTGTCTCTTTCCATTTTCAAAACAAAGGTTTCTTTGGTTTCTTTTCATTGAGTGTTTCTTGTCGAGTAGGTTACTCTTCTTTTCTTCATTTCATTTAACTTATCTGCATCTGAATTGTCACTGATTCTAATTCAATCCATGTATTGGTATTTGTTTCTCTTCGTAGGACAACATTCACCCTTGGCAGTTTCATTAACTAGACCTTATTTTCTTCACATTGTCATGGAATGCTCCATTCAAATTGGAACCCCAATACGCATAGGAGCATAGAAGTTAGGCCTCTTAGAAAGTCGTGAAAGATTTCTTTGGAATCTCATGGGGAAAACAATTCACATTAGTGGATTTCCTTCACATGTCACCGCAGATGCTGTTAAGAATTTTTTGGAGGGTCATACAGGTCCAGGTACTGTGTATGCCATAAAGGTTAGACCACCTAAGAGAGGGGGAGGTAGACTATATGCTATTGTTCAATTCACTAGTGCTACACAAGCTGAGTTGATCATTTCTTTAGCTAATCAACGTCTATGGTACGGATCTTCTTATCTTAAGGCTCGGGCAACCGAGGTTGATATTGTACCAAAACCTAGGACATACATGTATACCTTGGAAGAGTTGCTGCTATGCTTTGGTTGTCAAGTCTCAACTGAAAAGTTTCGTGTTCTATGGGAAGGAAATGTTGATTTGGTGACTTTTGGAATTGGAATGCGGAAAATGAACTTTCATTTGAAATATAAGTCTGTTGAGTATAGGCTTGAGCTTTCATATGAGATCATTTGGCAGATACAACTGCACTGTCCGCGAGATCAGTCTATGAAGTATCTTCTGATCCAGGTTCTATGATCAAATGTCTATCTAAATTTGTTTCATTTTATTTTGAAAAGCATAATTATCCTCTCTTGTAAAGTTGAAACATTTTGCTATACTTGTTTAAATTGTTTCAACTATTGTGTTAGTTGTTTGAACATTAAATCGATGTAACCTTGTTGAAAATGTTGCTATTTGTCTTAAATAGTAGATATGTTACTCACATGTAAGCTTAATAGTCAGGTTATCTTTTTCATGTTTTTCTTATCAGTTAAGTGGAGCTCCTCGGATATATAAAAAAGTTGCACCGAATAGTGGACAAATCTTCGACAATCCACTTTTGAACTTTTTTAAGGAAGCATCTGATGATCAATGGGTTAGAACGACTGATTTTACTTCATCATGCTCTATTGGACAATCTTCTTCTTTATGTTTGAAGCTACCTAATGGCCGTCAACTTCCACCTTTTAAACAAAATTTTGCTTATTATGAAGAATTTGAACATGAATTCCGCTTGATAGATGAAGATGCCAATTTTTCTTTTTGTAGAGATCTTGCTCCCATTGTTGATTCTCGTTCTCATGTTCTGCCGTATAAAATTTTGTTTAAAATAAATGCATTAGTTCAATATGGTTGCATTCCATGGCCATTACTTGATGCTAGTTTCTACCGGTTGGTCGAAAGAATAATAACAACAAGAATTGAATTTGTTGAACATGCCTTGGAAAAACTGTTCCATTTAAAGGAATGCAACTATGATCCATCAAACTTTCTTACAGAGCAGTACAGAAAGTATTCAAGACATCCTCCAAATTCTCCTGTTATATCCTTGGATGATGGTTTGGTATATGTTCGTAGGGTTCAAATAACACCTTGTAAGGTGTTCTTCTGTGGTCCTGAAGTCAATGTCTCAAATCGGGTGTTGCGCCATTTTTCTCAATATATTGATAATTTTCTTCGTGTGTCTTTTGTTGATGAGGAGTGGGATAAAATGCGTTCAACAGATTTATTGCCACGGATGTCTTCAAAGAGTGAGGATGGTAAAACTGATATCTACAGGAGAATTCTCTCTGTTCTTAAAAATGGCATAGTCATAGGTGATAAAACCTTTCAGTTTCTTGCATTCTCATCAAGCCAATTAAGAGATAATTCCTTGTGGATGTTTGCTTCCGGACCTGATATTGACGCAGCTTATATTAGAGCGTGGATGGGCGATTTTCGACATATCAAGAATCCCGCAAAGTATGCTGCTAGATTGGGCCAATCATTCGGCTCATCGACAGAGGCACTTTCAGTTGCTAGTAATGAAAGGGAAATTATTCCTGACATAGAGGTTCAACAGGGAGAAATCAAGTATGTCTTTTCTGATGGAATTGGAAAAATATCAAGCAAATTCGCCAAAGAGGTTGCTGCAAATGTGGTTTCCAAGCCGTCCCGTCTGCTTTTCAAATTCGTTATGGTGGATATAAGGGTGTTGTTGCTGTTGATCCGTACTCAACTATAAAATTATCTCTGAGGAAGAGTATGTGCAAATTTGAATCAGACAACACAAAACTTGACGTCTTAGGCCATAGCAAATACCAACCATGCTTCCTTAATCGTCAACTGATTACTCTCATGTCTACTCTAGGTGTTAGAGACGAAATTTTTGAGAAAAAACAAAGTGAAGCTGTAGAACAATTGGATGCCATTTTAACAGATCCATTGAAGGCTCAAGAAGCTTTGGAGTTGATGTCTCCCGGAGAGAATACTAATATTCTCAAGGAAATGCTCAAATGTGGCTATCAACCAGATGTCGAGCCGTATCTGTCAATGATGTTACAAACTTTCCGGGCATCAAAGTTGCTAGAGTTACGCACCAAATCAAGAATCTTTATCCCAAATGGGAGAGCGATGATGGGATGTCTTGATGAGACCAGGACCTTGGAATATGGGCAGGTATTTGTGCAAATCTCCAGTGGTAGACATCGAAATTTATCTGAATCCTTCGCATTCAATAGAATTGGTCGAGAACACCATTTAGTTATTGAAGGAAATGTTACAGTTGCTAAAAATCCCTGCCTGCACCCTGGTGATGTTCGTGTATTAAAGGCTGTAAATATACCTGGTTTGTACCATATGGTTGACTGTGTAGTTTTTCCTCAAAAAGGATCAAGGTTGGTAGTACATTGACCAATGCTAGTTCTTTCTTGATTTGGACAATAAGTTATGTTTTCAAATTTAAATGCAAGAAAGCCCCTTCACTTCAGAATAGTAACATGTCAACATATATTTTCTAGAATAGGTTCTGTGACTAATAGCTTGCATAATTTTGGTTGGAAGATTTTCCTCTTAAATAGATGTTACTAACCAGATTTTGTACTTGTTTATTTAGGCCTCATCCGAATGAATGCTCAGGTAGTGATTTAGATGGTGATATTTACTTTGTCTGTTGGGACACCGAATTGATCCCGTCTCGACAAATTCCACCTATGGATTATACTCCTGCACCTCCAAATGAGTTAGATCGTGATGTTACAACTGAGGTATTTTGACAGTGGCATGTTTTGAAAACTTGATAACTCATGCCACTTTTTCAGTGTTTAATCTCCGTTTTAATATTTGACATAACAGTGAACTTCAATTTATGTTTTTTTCTTAAAATAGATTCACGTTGCGCATTGCTTCTCATTAGAAGAGAGACCATTCATGTTTGTATGTGTTCTTAGTCCTAATCTGAAACTACTGTTCTTTACCACAGGATATCCAAGAATATTTTGTGAACTACATGGTTAATGATAGTCTTGGAATCATTGCCAATGCTCATACTGCCTTTGCAGATAAAGAGCTCTTTAAAGCAAGGAGTAGTCCTTGTTTGGAGCTTGCAAAGCTATTCTCCGTTGCTGTGGACTTCCCAAAAACTGGAGTACCAGCTATAATACCTTCTCATTTATATGTCAAAGAGTTTCCTGACTTTATGGAGAAGCCTGACCGACCCTCTTATGAATCAAACAAAGTAATTGGAAAACTTTTTCGGGCTGTGAAAGACATTGCACCAACTTTAAGCCATATTCGGTCATTTACTCGAGATGTAGCAAGAAGGTGTTACGACTGTGATATGGAAGTCGAAGGCTTTGAAGATTATGTTGAAGATGCCTTCTATCATAAAAGCAATTATGATTACAAGTTGGGGAATTTGCTTGATTATTATGGTATCAAGTCTGAGGCAGAAGTACTTAGTGGGAGTATCATGAGGATGTCCAAGTCTTTCACCAGGAGAAGAGATGCAGAAGCAATCAACTTGGCTGTAAGGTCTCTGAGAAAGGAGGCTAGGACATGGTTCAATGCAAGAGAAGGCGCAGATTCGAATTCAGATGATTTATTTGCCAAAGCTTCAGCTTGGTACTATGTTACATACCATCACTCTTATTGGGGCTGCTATAATGAGGGAATGAAACGCGACCATTATTTGAGCTTCCCCTGGTGTGTTTACGACAAACTGATGCAAATCAAGGAGAATAATTTGAGAAGAAGAGAGAGAGCTGCAAGACTGGCAAGTTTCGACAGATTCGGACATGTGTTAAATCTTGGTGGGAGTTGAAGAATGATCAATATGGTTGGTTTGCTGTCAGATTGAACTAAATTTTTCTGTAGCTTTAAATGATTGAACTAAGAGAGGAAACTTGAAATGGAAATTGTCTTTTAACTCGTTGAAAACTTGTTAGTTTATAAGGAATGTTGTTTCTGTTTACCGTGTAATATCCACATTCGCATGTACAGAGTTCATGAAATCTCAAACCTTAGTCTCACTTTCTCTTAAACTATAGCCCATCCTCCTGCCAGCTTTTTATGTGCGTACTCGTTGATTTATGAGATCATCTAGTGGGGAATCTCCATCTCGATTCCTATAAAATTTAACAAATTTTTTTTTGTCAAAATGAATAGTTAAACAAAAGCAAGGATGATGAAGCCTACTTTGTCTCCTACCCTGCTCTCTAAACATCTCTATGTATCAATGGTCAACACCAGGATTATCAGATATATCATATGTTACAAGAGAAGCA

mRNA sequence

AGAAGATAAAGTTTCAACCGATCATTTAAAGAAAACGAGTAGATATTGTTATAGATTAAAATCAAAAAGATTGATGAAATTGGATTGGAATCTATATTTTGTTGATTGATTTTTGTCAACAAATTAATCTATATTTATATGAGTGAGATGAAAGGAAATGAAGAATTAAAGAAAAAGACATTGGAGATATTTTAAATTTATTAAGGTATGTTCATATATTTGGGTTGGATTTGGTTTGGGGATGGATTTTCAGACAAAGATCAAACAAATTAAAAAATGGTTGATTTTCTCCAAATTCAATCCAATTCATTGGGTAAGTTTGGTTTGATTTGGTTTTACCCATTTTGAAACCACAAGGACTAAATATGATCCATCAAATTTGGTGACAGAAATATGTTTTTGTATTAAAAATGGTGATTTCACAAGAAAAAACCAAGAAAAATAGAGCAAGATGAAAAGGTTAACCAAAGGGTGCTATTTCTTTTTGACAATTTGACTGGTTACACCTCACTTGATCAGTCTCTACTTCACGATCCCTCGTCTCCCTCTGTATGGGCTCTCAAACGGTCAGACCAAAAGTTACGTTGGAATTACTGGCGCTGAAGCGATTTTCTTCTTTCAAAGCTCCAACATTGGAGTTTGATCTAGGCGAGCACTCAGGTTGGAAACTCGAGCATTCACCTATATTCTGGGGCTGTCTGATTGTGTGTCTCTTTCCATTTTCAAAACAAAGGTTTCTTTGGTTTCTTTTCATTGAGTGTTTCTTGTCGAGACAACATTCACCCTTGGCAGTTTCATTAACTAGACCTTATTTTCTTCACATTGTCATGGAATGCTCCATTCAAATTGGAACCCCAATACGCATAGGAGCATAGAAGTTAGGCCTCTTAGAAAGTCGTGAAAGATTTCTTTGGAATCTCATGGGGAAAACAATTCACATTAGTGGATTTCCTTCACATGTCACCGCAGATGCTGTTAAGAATTTTTTGGAGGGTCATACAGGTCCAGGTACTGTGTATGCCATAAAGGTTAGACCACCTAAGAGAGGGGGAGGTAGACTATATGCTATTGTTCAATTCACTAGTGCTACACAAGCTGAGTTGATCATTTCTTTAGCTAATCAACGTCTATGGTACGGATCTTCTTATCTTAAGGCTCGGGCAACCGAGGTTGATATTGTACCAAAACCTAGGACATACATGTATACCTTGGAAGAGTTGCTGCTATGCTTTGGTTGTCAAGTCTCAACTGAAAAGTTTCGTGTTCTATGGGAAGGAAATGTTGATTTGGTGACTTTTGGAATTGGAATGCGGAAAATGAACTTTCATTTGAAATATAAGTCTGTTGAGTATAGGCTTGAGCTTTCATATGAGATCATTTGGCAGATACAACTGCACTGTCCGCGAGATCAGTCTATGAAGTATCTTCTGATCCAGTTAAGTGGAGCTCCTCGGATATATAAAAAAGTTGCACCGAATAGTGGACAAATCTTCGACAATCCACTTTTGAACTTTTTTAAGGAAGCATCTGATGATCAATGGGTTAGAACGACTGATTTTACTTCATCATGCTCTATTGGACAATCTTCTTCTTTATGTTTGAAGCTACCTAATGGCCGTCAACTTCCACCTTTTAAACAAAATTTTGCTTATTATGAAGAATTTGAACATGAATTCCGCTTGATAGATGAAGATGCCAATTTTTCTTTTTGTAGAGATCTTGCTCCCATTGTTGATTCTCGTTCTCATGTTCTGCCGTATAAAATTTTGTTTAAAATAAATGCATTAGTTCAATATGGTTGCATTCCATGGCCATTACTTGATGCTAGTTTCTACCGGTTGGTCGAAAGAATAATAACAACAAGAATTGAATTTGTTGAACATGCCTTGGAAAAACTGTTCCATTTAAAGGAATGCAACTATGATCCATCAAACTTTCTTACAGAGCAGTACAGAAAGTATTCAAGACATCCTCCAAATTCTCCTGTTATATCCTTGGATGATGGTTTGGTATATGTTCGTAGGGTTCAAATAACACCTTGTAAGGTGTTCTTCTGTGGTCCTGAAGTCAATGTCTCAAATCGGGTGTTGCGCCATTTTTCTCAATATATTGATAATTTTCTTCGTGTGTCTTTTGTTGATGAGGAGTGGGATAAAATGCGTTCAACAGATTTATTGCCACGGATGTCTTCAAAGAGTGAGGATGGTAAAACTGATATCTACAGGAGAATTCTCTCTGTTCTTAAAAATGGCATAGTCATAGGTGATAAAACCTTTCAGTTTCTTGCATTCTCATCAAGCCAATTAAGAGATAATTCCTTGTGGATGTTTGCTTCCGGACCTGATATTGACGCAGCTTATATTAGAGCGTGGATGGGCGATTTTCGACATATCAAGAATCCCGCAAAGTATGCTGCTAGATTGGGCCAATCATTCGGCTCATCGACAGAGGCACTTTCAGTTGCTAGTAATGAAAGGGAAATTATTCCTGACATAGAGGTTCAACAGGGAGAAATCAAGTATGTCTTTTCTGATGGAATTGGAAAAATATCAAGCAAATTCGCCAAAGAGGTTGCTGCAAATGTGGTTTCCAAGCCGTCCCGTCTGCTTTTCAAATTCGTTATGGTGGATATAAGGGTGTTGTTGCTGTTGATCCGTACTCAACTATAAAATTATCTCTGAGGAAGAGTATGTGCAAATTTGAATCAGACAACACAAAACTTGACGTCTTAGGCCATAGCAAATACCAACCATGCTTCCTTAATCGTCAACTGATTACTCTCATGTCTACTCTAGGTGTTAGAGACGAAATTTTTGAGAAAAAACAAAGTGAAGCTGTAGAACAATTGGATGCCATTTTAACAGATCCATTGAAGGCTCAAGAAGCTTTGGAGTTGATGTCTCCCGGAGAGAATACTAATATTCTCAAGGAAATGCTCAAATGTGGCTATCAACCAGATGTCGAGCCGTATCTGTCAATGATGTTACAAACTTTCCGGGCATCAAAGTTGCTAGAGTTACGCACCAAATCAAGAATCTTTATCCCAAATGGGAGAGCGATGATGGGATGTCTTGATGAGACCAGGACCTTGGAATATGGGCAGGTATTTGTGCAAATCTCCAGTGGTAGACATCGAAATTTATCTGAATCCTTCGCATTCAATAGAATTGGTCGAGAACACCATTTAGTTATTGAAGGAAATGTTACAGTTGCTAAAAATCCCTGCCTGCACCCTGGTGATGTTCGTGTATTAAAGGCTGTAAATATACCTGGTTTGTACCATATGGTTGACTGTGTAGTTTTTCCTCAAAAAGGATCAAGGCCTCATCCGAATGAATGCTCAGGTAGTGATTTAGATGGTGATATTTACTTTGTCTGTTGGGACACCGAATTGATCCCGTCTCGACAAATTCCACCTATGGATTATACTCCTGCACCTCCAAATGAGTTAGATCGTGATGTTACAACTGAGGATATCCAAGAATATTTTGTGAACTACATGGTTAATGATAGTCTTGGAATCATTGCCAATGCTCATACTGCCTTTGCAGATAAAGAGCTCTTTAAAGCAAGGAGTAGTCCTTGTTTGGAGCTTGCAAAGCTATTCTCCGTTGCTGTGGACTTCCCAAAAACTGGAGTACCAGCTATAATACCTTCTCATTTATATGTCAAAGAGTTTCCTGACTTTATGGAGAAGCCTGACCGACCCTCTTATGAATCAAACAAAGTAATTGGAAAACTTTTTCGGGCTGTGAAAGACATTGCACCAACTTTAAGCCATATTCGGTCATTTACTCGAGATGTAGCAAGAAGGTGTTACGACTGTGATATGGAAGTCGAAGGCTTTGAAGATTATGTTGAAGATGCCTTCTATCATAAAAGCAATTATGATTACAAGTTGGGGAATTTGCTTGATTATTATGGTATCAAGTCTGAGGCAGAAGTACTTAGTGGGAGTATCATGAGGATGTCCAAGTCTTTCACCAGGAGAAGAGATGCAGAAGCAATCAACTTGGCTGTAAGGTCTCTGAGAAAGGAGGCTAGGACATGGTTCAATGCAAGAGAAGGCGCAGATTCGAATTCAGATGATTTATTTGCCAAAGCTTCAGCTTGGTACTATGTTACATACCATCACTCTTATTGGGGCTGCTATAATGAGGGAATGAAACGCGACCATTATTTGAGCTTCCCCTGGTGTGTTTACGACAAACTGATGCAAATCAAGGAGAATAATTTGAGAAGAAGAGAGAGAGCTGCAAGACTGGCAAGTTTCGACAGATTCGGACATGTGTTAAATCTTGGTGGGAGTTGAAGAATGATCAATATGGTTGGTTTGCTGTCAGATTGAACTAAATTTTTCTGTAGCTTTAAATGATTGAACTAAGAGAGGAAACTTGAAATGGAAATTGTCTTTTAACTCGTTGAAAACTTGTTAGTTTATAAGGAATGTTGTTTCTGTTTACCGTGTAATATCCACATTCGCATGTACAGAGTTCATGAAATCTCAAACCTTAGTCTCACTTTCTCTTAAACTATAGCCCATCCTCCTGCCAGCTTTTTATGTGCGTACTCGTTGATTTATGAGATCATCTAGTGGGGAATCTCCATCTCGATTCCTATAAAATTTAACAAATTTTTTTTTGTCAAAATGAATAGTTAAACAAAAGCAAGGATGATGAAGCCTACTTTGTCTCCTACCCTGCTCTCTAAACATCTCTATGTATCAATGGTCAACACCAGGATTATCAGATATATCATATGTTACAAGAGAAGCA

Coding sequence (CDS)

ATGGGGAAAACAATTCACATTAGTGGATTTCCTTCACATGTCACCGCAGATGCTGTTAAGAATTTTTTGGAGGGTCATACAGGTCCAGGTACTGTGTATGCCATAAAGGTTAGACCACCTAAGAGAGGGGGAGGTAGACTATATGCTATTGTTCAATTCACTAGTGCTACACAAGCTGAGTTGATCATTTCTTTAGCTAATCAACGTCTATGGTACGGATCTTCTTATCTTAAGGCTCGGGCAACCGAGGTTGATATTGTACCAAAACCTAGGACATACATGTATACCTTGGAAGAGTTGCTGCTATGCTTTGGTTGTCAAGTCTCAACTGAAAAGTTTCGTGTTCTATGGGAAGGAAATGTTGATTTGGTGACTTTTGGAATTGGAATGCGGAAAATGAACTTTCATTTGAAATATAAGTCTGTTGAGTATAGGCTTGAGCTTTCATATGAGATCATTTGGCAGATACAACTGCACTGTCCGCGAGATCAGTCTATGAAGTATCTTCTGATCCAGTTAAGTGGAGCTCCTCGGATATATAAAAAAGTTGCACCGAATAGTGGACAAATCTTCGACAATCCACTTTTGAACTTTTTTAAGGAAGCATCTGATGATCAATGGGTTAGAACGACTGATTTTACTTCATCATGCTCTATTGGACAATCTTCTTCTTTATGTTTGAAGCTACCTAATGGCCGTCAACTTCCACCTTTTAAACAAAATTTTGCTTATTATGAAGAATTTGAACATGAATTCCGCTTGATAGATGAAGATGCCAATTTTTCTTTTTGTAGAGATCTTGCTCCCATTGTTGATTCTCGTTCTCATGTTCTGCCGTATAAAATTTTGTTTAAAATAAATGCATTAGTTCAATATGGTTGCATTCCATGGCCATTACTTGATGCTAGTTTCTACCGGTTGGTCGAAAGAATAATAACAACAAGAATTGAATTTGTTGAACATGCCTTGGAAAAACTGTTCCATTTAAAGGAATGCAACTATGATCCATCAAACTTTCTTACAGAGCAGTACAGAAAGTATTCAAGACATCCTCCAAATTCTCCTGTTATATCCTTGGATGATGGTTTGGTATATGTTCGTAGGGTTCAAATAACACCTTGTAAGGTGTTCTTCTGTGGTCCTGAAGTCAATGTCTCAAATCGGGTGTTGCGCCATTTTTCTCAATATATTGATAATTTTCTTCGTGTGTCTTTTGTTGATGAGGAGTGGGATAAAATGCGTTCAACAGATTTATTGCCACGGATGTCTTCAAAGAGTGAGGATGGTAAAACTGATATCTACAGGAGAATTCTCTCTGTTCTTAAAAATGGCATAGTCATAGGTGATAAAACCTTTCAGTTTCTTGCATTCTCATCAAGCCAATTAAGAGATAATTCCTTGTGGATGTTTGCTTCCGGACCTGATATTGACGCAGCTTATATTAGAGCGTGGATGGGCGATTTTCGACATATCAAGAATCCCGCAAAGTATGCTGCTAGATTGGGCCAATCATTCGGCTCATCGACAGAGGCACTTTCAGTTGCTAGTAATGAAAGGGAAATTATTCCTGACATAGAGGTTCAACAGGGAGAAATCAAGTATGTCTTTTCTGATGGAATTGGAAAAATATCAAGCAAATTCGCCAAAGAGGTTGCTGCAAATGTGGTTTCCAAGCCGTCCCGTCTGCTTTTCAAATTCGTTATGGTGGATATAAGGGTGTTGTTGCTGTTGATCCGTACTCAACTATAA

Protein sequence

MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGIGKISSKFAKEVAANVVSKPSRLLFKFVMVDIRVLLLLIRTQL
Homology
[Close]
BLAST of CsGy5G009080 vs. NCBI nr
Match: KGN50761.1 (hypothetical protein Csa_5G239140 [Cucumis sativus])

HSP 1 Score: 1130.9 bits (2924), Expect = 0.0e+00
Identity = 553/553 (100.00%), Postives = 553/553 (100.00%), Query Frame = 0 

Query: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
           MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
           LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN
Sbjct: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120

Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
           VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180

Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
           KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ
Sbjct: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240

Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
           NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL
Sbjct: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300

Query: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
           DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD
Sbjct: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360

Query: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
           DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
           RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
           IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI
Sbjct: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540

Query: 541 GKISSKFAKEVAA 554
           GKISSKFAKEVAA
Sbjct: 541 GKISSKFAKEVAA 553

[Close]
BLAST of CsGy5G009080 vs. NCBI nr
Match: NP_001267692.1 (RNA-dependent RNA polymerase 1-like [Cucumis sativus] >XP_011654423.1 PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cucumis sativus] >ADU77015.1 RNA-dependent RNA polymerase 1a [Cucumis sativus] >ALM88233.1 RNA-dependent RNA polymerase 1a [Cucumis sativus])

HSP 1 Score: 1130.9 bits (2924), Expect = 0.0e+00
Identity = 553/553 (100.00%), Postives = 553/553 (100.00%), Query Frame = 0 

Query: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
           MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
           LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN
Sbjct: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120

Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
           VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180

Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
           KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ
Sbjct: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240

Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
           NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL
Sbjct: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300

Query: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
           DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD
Sbjct: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360

Query: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
           DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
           RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
           IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI
Sbjct: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540

Query: 541 GKISSKFAKEVAA 554
           GKISSKFAKEVAA
Sbjct: 541 GKISSKFAKEVAA 553

[Close]
BLAST of CsGy5G009080 vs. NCBI nr
Match: XP_008465250.1 (PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo] >XP_008465251.1 PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo] >XP_008465253.1 PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo] >XP_008465254.1 PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo])

HSP 1 Score: 1063.9 bits (2750), Expect = 1.9e-307
Identity = 516/552 (93.48%), Postives = 535/552 (96.92%), Query Frame = 0 

Query: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
           MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
           LI+SLANQRLWYGSSYLKAR+TEVDIVPKP+TYMY L++LLLCFGCQVS+EKFRVLWEGN
Sbjct: 61  LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120

Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
           VDLVTFGIGMRKMNFHLKY SVEYRLELSYE IWQIQLH P+ QSMKYLLIQL GAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180

Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
           KKVAP+SGQIFDNP+LNFF E  DDQWVRTTDFTSSCSIGQSSSLCLKLPNG +LP FKQ
Sbjct: 181 KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240

Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
           NFAYYEEFEHEFRLIDEDA+FSFCRDLAPIVDSR HVLPY+I+FKINALVQ+GCIPW LL
Sbjct: 241 NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300

Query: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
           D SFYRLVERIIT RIEFVEHALEKLFHLKECNYDPSNFLTEQ+R+YSRHPPNSPVISLD
Sbjct: 301 DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360

Query: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
           DGLVYVRRVQITPCKV+FCGPEVNVSNRVLRHFS+YIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361 DGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
           RMSSKSED KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421 RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
           IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQ GE+KYVFSDGI
Sbjct: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540

Query: 541 GKISSKFAKEVA 553
           GKISSKFAKEVA
Sbjct: 541 GKISSKFAKEVA 552

[Close]
BLAST of CsGy5G009080 vs. NCBI nr
Match: NP_001315397.1 (RNA-dependent RNA polymerase 1 [Cucumis melo] >ALM88236.1 RNA-dependent RNA polymerase 1a [Cucumis melo])

HSP 1 Score: 1063.5 bits (2749), Expect = 2.5e-307
Identity = 516/552 (93.48%), Postives = 535/552 (96.92%), Query Frame = 0 

Query: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
           MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
           LI+SLANQRLWYGSSYLKAR+TEVDIVPKP+TYMYTL++LLLCFGCQVS+EKFRVLWEGN
Sbjct: 61  LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYTLKDLLLCFGCQVSSEKFRVLWEGN 120

Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
           VDLVTFGIGMRKMNFHLKY SVEYRLELSYE IWQIQLH P+ QSMKYLLIQL GAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180

Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
           KKVAP+SGQIFDNP+LNFF E  DDQWVRTTDFTSSCSIGQSSSLCLKLPNG +LP FKQ
Sbjct: 181 KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240

Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
           NFAYYEEFEHEFRLIDE A+FSFCRDLAPIVDSR HVLPY+I+FKINALVQ+GCIPW LL
Sbjct: 241 NFAYYEEFEHEFRLIDEGASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300

Query: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
           D SFYRLVERIIT RIEFVEHALEKLFHLKECNYDPSNFLTEQ+R+YSRHPPNSPVISLD
Sbjct: 301 DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360

Query: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
           DGLVYVRRVQITPCKV+FCGPEVNVSNRVLRHFS+YIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361 DGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
           RMSSKSED KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421 RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
           IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQ GE+KYVFSDGI
Sbjct: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540

Query: 541 GKISSKFAKEVA 553
           GKISSKFAKEVA
Sbjct: 541 GKISSKFAKEVA 552

[Close]
BLAST of CsGy5G009080 vs. NCBI nr
Match: XP_022943173.1 (RNA-dependent RNA polymerase 1-like isoform X2 [Cucurbita moschata] >XP_022943174.1 RNA-dependent RNA polymerase 1-like isoform X2 [Cucurbita moschata] >XP_022943175.1 RNA-dependent RNA polymerase 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 887.9 bits (2293), Expect = 1.9e-254
Identity = 437/557 (78.46%), Postives = 487/557 (87.43%), Query Frame = 0 

Query: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
           MGKT+HISGFPSH TAD+VK+FLE  TG GTVYAIKVRPPKRGG R+YAIVQF  A QAE
Sbjct: 1   MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60

Query: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
           LIISLANQRLWYGSSYLKARA +VDIVPKPRTY++TLE+L LCFGCQVS+EKF VLWEG+
Sbjct: 61  LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120

Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
           V+LVTFG+ MRKMNFHL +  VEYR +LSYE IWQIQLH  + QSMK LLIQL GAPRIY
Sbjct: 121 VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180

Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
           KKVAP+SGQIFD+PL NFFKE  DDQWVRT DFT S S+GQSSSLCLKLPNGRQLP F++
Sbjct: 181 KKVAPSSGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSVGQSSSLCLKLPNGRQLPNFRR 240

Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHV-LPYKILFKINALVQYGCIPWPL 300
           +FAYYEEFE EF+L+D   +FS   DL P+VDSR +V LPY+I+FK+N LVQ GCI  P 
Sbjct: 241 HFAYYEEFEDEFKLVDGGNSFSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIAGPS 300

Query: 301 LDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISL 360
           LD  FYRLV+     R+E+VE+ALEKLFHLKEC Y+PS+FLTEQY+KY++HP NSP I+L
Sbjct: 301 LDTGFYRLVDP-SRIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKYAKHPSNSPAIAL 360

Query: 361 DDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLL 420
           DDGLVYVRRVQITPCKV+FCGPEVNVSNRVLRHFS+ +DNFLRVSFVDEEWDKMRSTDLL
Sbjct: 361 DDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDLL 420

Query: 421 PRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAA 480
           PRM+S  E+GKTDIYRRILSVLKNGI IGDK F+FLAFSSSQLR+NSLWMFAS P +DAA
Sbjct: 421 PRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDAA 480

Query: 481 YIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDG 540
            IR WMGDFRHIKNPAKYAARLGQSFGSSTE LSVA +EREIIPDIEVQ GE+KYVFSDG
Sbjct: 481 VIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVARHEREIIPDIEVQHGEVKYVFSDG 540

Query: 541 IGKISSKFAKEVAANVV 557
           IGKISS FAK VA+  V
Sbjct: 541 IGKISSDFAKRVASKCV 556

[Close]
BLAST of CsGy5G009080 vs. TAIR10
Match: AT1G14790.1 (RNA-dependent RNA polymerase 1)

HSP 1 Score: 606.7 bits (1563), Expect = 1.5e-173
Identity = 313/556 (56.29%), Postives = 405/556 (72.84%), Query Frame = 0 

Query: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
           MGKTI + GFP+ V+A+ VK FLE  TG GTVYAIKVR PK+GG R+YAIVQFTS     
Sbjct: 1   MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
           LII+ A +RL+YG SYLKA   E DIVPKPR  ++T+  L + FGCQVST+KF  LW   
Sbjct: 61  LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
              V+FGIGMRK++F   +   +YRLELSYE IWQI LH P+ +S K+L+IQ+ GAP+I+
Sbjct: 121 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180

Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
           +K       +F   +++F+ + SD+QW+RTTDFTSS  IGQS++ CL+LP    +P F++
Sbjct: 181 EKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 240

Query: 241 NFAYYEEFEHEFRLIDEDANFSF-CRDLAPIVD-SRSHVLPYKILFKINALVQYGCIPWP 300
           NFA Y E      LI+  +++S     L P+VD      LP++ILFK+N LVQ  C+  P
Sbjct: 241 NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 300

Query: 301 LLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKY--SRHPPNSPV 360
            LD  FYRL+ +    R   ++H LEKLFHL EC Y+P+++L ++Y+K+      P SP 
Sbjct: 301 ALDLDFYRLLNQKKYDR-ALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPT 360

Query: 361 ISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRST 420
           ISLDDGLVY+ RVQ+TP +V+F GPEVNVSNRVLRH+S+YI+NFLRVSFVDE+ +K+RS 
Sbjct: 361 ISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSM 420

Query: 421 DLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDI 480
           DL PR S++    +T +Y RI SVL++GIVIGDK F+FLAFSSSQLR+NS WMFA    I
Sbjct: 421 DLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRI 480

Query: 481 DAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVF 540
            AA+IRAWMGDF HI+N AKYAARLGQSF SS E L+V S+E E+IPD+E+     +YVF
Sbjct: 481 TAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVF 540

Query: 541 SDGIGKISSKFAKEVA 553
           SDGIGKIS++FA++VA
Sbjct: 541 SDGIGKISAEFARKVA 550

[Close]
BLAST of CsGy5G009080 vs. TAIR10
Match: AT4G11130.1 (RNA-dependent RNA polymerase 2)

HSP 1 Score: 296.6 bits (758), Expect = 3.4e-80
Identity = 199/571 (34.85%), Postives = 309/571 (54.12%), Query Frame = 0 

Query: 4   TIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGG--GRLYAIVQFTS---ATQ 63
           T+ IS  P  + AD +  FLE H G  TV+A+++ P  R     R +A VQFT+    ++
Sbjct: 11  TVKISNVPQTIVADELLRFLELHLGEDTVFALEI-PTTRDNWKPRDFARVQFTTLEVKSR 70

Query: 64  AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEK-FRVL- 123
           A+L+ S    +L + +  L+      DI+P+P      L++++L  G   S EK F  L 
Sbjct: 71  AQLLSS--QSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALE 130

Query: 124 -WEGNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKY--LLIQL 183
            W+G    +      R++ F +      Y++E+ +E I +    C    + +    L++L
Sbjct: 131 KWDGVRCWIL--TEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKL 190

Query: 184 SGAPRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGR 243
              P+++K+V  +    F +    F KE  D  W+RTTDF+ S SIG S+  CL++ NG 
Sbjct: 191 KYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGS 250

Query: 244 QLPPFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVL--PYKILFKINALVQ 303
            +        YY E       +D    F+    + P++++    L  PY+ILF++NALV 
Sbjct: 251 TMLDIFSGLPYYREDTLSLTYVD-GKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVH 310

Query: 304 YGCIPWPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYR---KYS 363
              I   L  AS   L++ +    +E     L+KL       YDP  F+  Q +   K  
Sbjct: 311 AQKI--SLFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKM 370

Query: 364 RHPPNSPVISL-DDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVD 423
           +H P S    L +  ++  +R  +TP K++  GPE+  +N V+++F++++ +F+RV+FV+
Sbjct: 371 KHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVE 430

Query: 424 EEWDKMRSTDLLPRMSSKSEDG------KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQ 483
           E+W K+ +  L    S  S++G      +T+IY R+LS+L  GI +G K F+FLAFS+SQ
Sbjct: 431 EDWSKLPANAL----SVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQ 490

Query: 484 LRDNSLWMFASGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREI 543
           LR NS+WMFAS   + A  IR WMG FR I++ +K AAR+GQ F +S + L V + + E 
Sbjct: 491 LRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQ 550

Query: 544 IPDIEVQQGEIKYVFSDGIGKISSKFAKEVA 553
           IPDIEV      Y FSDGIGKIS  FAK+VA
Sbjct: 551 IPDIEVTTDGADYCFSDGIGKISLAFAKQVA 569

[Close]
BLAST of CsGy5G009080 vs. TAIR10
Match: AT3G49500.1 (RNA-dependent RNA polymerase 6)

HSP 1 Score: 151.4 bits (381), Expect = 1.8e-36
Identity = 141/495 (28.48%), Postives = 229/495 (46.26%), Query Frame = 0 

Query: 92  TYMYTLEELLLCFGCQVSTEKFRVLWEG-NVDLV------TFGIGMRKMN-FHLK----- 151
           T  Y L  + L  G  VS + F V W    VD +      T     RK   F  K     
Sbjct: 127 TVPYKLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMH 186

Query: 152 -YKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIYKKVAPNSGQIFDNPLLN 211
              + +Y+LEL    I  ++ +  +      L++QL+ +PR++ + A +   I+D    +
Sbjct: 187 AVINCDYKLELLVRDIQTVRQY--KTLHGFVLILQLASSPRVWYRTADD--DIYDTVPGD 246

Query: 212 FFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQ------LPPFKQNFAYYEEFEHE 271
              +  DD W+RTTDFT   +IG+  S  + +    +      L  F+      E     
Sbjct: 247 LLDD--DDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWP 306

Query: 272 FRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLLDASFYRLVERI 331
            R+ +E        D    +  +  +  ++I+F +N+++  G      L   F+ L+   
Sbjct: 307 PRIRNEPCFGEPVSDHFFCIHHKEGI-SFEIMFLVNSVLHRGVFNQFQLTERFFDLL--- 366

Query: 332 ITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRK-------YSRHPPNSPVISLDDGLV 391
              R +  +  +  L HL  C Y    F  + Y++         ++P         + + 
Sbjct: 367 ---RNQPKDVNIASLKHL--CTYKRPVF--DAYKRLKLVQEWIQKNPKLLGSHEQSEDIS 426

Query: 392 YVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRS-------TD 451
            +RR+ ITP + +   PEV +SNRVLR +    + FLRV+F+DE    + S         
Sbjct: 427 EIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAP 486

Query: 452 LLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDID 511
           ++  ++S S   KT +++R+ S+L +G  +  + + FLAFS++QLRD S W FA      
Sbjct: 487 IVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTR 546

Query: 512 AAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREI-IPDIEVQQGEIKYVF 552
            + I+ WMG F+  KN AK AAR+G  F S+   + V  +E +  +PDIE + G   YVF
Sbjct: 547 VSDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE-RNG---YVF 599

[Close]
BLAST of CsGy5G009080 vs. Swiss-Prot
Match: sp|Q9LQV2|RDR1_ARATH (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1)

HSP 1 Score: 606.7 bits (1563), Expect = 2.7e-172
Identity = 313/556 (56.29%), Postives = 405/556 (72.84%), Query Frame = 0 

Query: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
           MGKTI + GFP+ V+A+ VK FLE  TG GTVYAIKVR PK+GG R+YAIVQFTS     
Sbjct: 1   MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
           LII+ A +RL+YG SYLKA   E DIVPKPR  ++T+  L + FGCQVST+KF  LW   
Sbjct: 61  LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
              V+FGIGMRK++F   +   +YRLELSYE IWQI LH P+ +S K+L+IQ+ GAP+I+
Sbjct: 121 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180

Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
           +K       +F   +++F+ + SD+QW+RTTDFTSS  IGQS++ CL+LP    +P F++
Sbjct: 181 EKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 240

Query: 241 NFAYYEEFEHEFRLIDEDANFSF-CRDLAPIVD-SRSHVLPYKILFKINALVQYGCIPWP 300
           NFA Y E      LI+  +++S     L P+VD      LP++ILFK+N LVQ  C+  P
Sbjct: 241 NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 300

Query: 301 LLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKY--SRHPPNSPV 360
            LD  FYRL+ +    R   ++H LEKLFHL EC Y+P+++L ++Y+K+      P SP 
Sbjct: 301 ALDLDFYRLLNQKKYDR-ALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPT 360

Query: 361 ISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRST 420
           ISLDDGLVY+ RVQ+TP +V+F GPEVNVSNRVLRH+S+YI+NFLRVSFVDE+ +K+RS 
Sbjct: 361 ISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSM 420

Query: 421 DLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDI 480
           DL PR S++    +T +Y RI SVL++GIVIGDK F+FLAFSSSQLR+NS WMFA    I
Sbjct: 421 DLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRI 480

Query: 481 DAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVF 540
            AA+IRAWMGDF HI+N AKYAARLGQSF SS E L+V S+E E+IPD+E+     +YVF
Sbjct: 481 TAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVF 540

Query: 541 SDGIGKISSKFAKEVA 553
           SDGIGKIS++FA++VA
Sbjct: 541 SDGIGKISAEFARKVA 550

[Close]
BLAST of CsGy5G009080 vs. Swiss-Prot
Match: sp|O82504|RDR2_ARATH (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.1e-79
Identity = 199/571 (34.85%), Postives = 309/571 (54.12%), Query Frame = 0 

Query: 4   TIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGG--GRLYAIVQFTS---ATQ 63
           T+ IS  P  + AD +  FLE H G  TV+A+++ P  R     R +A VQFT+    ++
Sbjct: 11  TVKISNVPQTIVADELLRFLELHLGEDTVFALEI-PTTRDNWKPRDFARVQFTTLEVKSR 70

Query: 64  AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEK-FRVL- 123
           A+L+ S    +L + +  L+      DI+P+P      L++++L  G   S EK F  L 
Sbjct: 71  AQLLSS--QSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALE 130

Query: 124 -WEGNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKY--LLIQL 183
            W+G    +      R++ F +      Y++E+ +E I +    C    + +    L++L
Sbjct: 131 KWDGVRCWIL--TEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKL 190

Query: 184 SGAPRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGR 243
              P+++K+V  +    F +    F KE  D  W+RTTDF+ S SIG S+  CL++ NG 
Sbjct: 191 KYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGS 250

Query: 244 QLPPFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVL--PYKILFKINALVQ 303
            +        YY E       +D    F+    + P++++    L  PY+ILF++NALV 
Sbjct: 251 TMLDIFSGLPYYREDTLSLTYVD-GKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVH 310

Query: 304 YGCIPWPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYR---KYS 363
              I   L  AS   L++ +    +E     L+KL       YDP  F+  Q +   K  
Sbjct: 311 AQKI--SLFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKM 370

Query: 364 RHPPNSPVISL-DDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVD 423
           +H P S    L +  ++  +R  +TP K++  GPE+  +N V+++F++++ +F+RV+FV+
Sbjct: 371 KHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVE 430

Query: 424 EEWDKMRSTDLLPRMSSKSEDG------KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQ 483
           E+W K+ +  L    S  S++G      +T+IY R+LS+L  GI +G K F+FLAFS+SQ
Sbjct: 431 EDWSKLPANAL----SVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQ 490

Query: 484 LRDNSLWMFASGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREI 543
           LR NS+WMFAS   + A  IR WMG FR I++ +K AAR+GQ F +S + L V + + E 
Sbjct: 491 LRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQ 550

Query: 544 IPDIEVQQGEIKYVFSDGIGKISSKFAKEVA 553
           IPDIEV      Y FSDGIGKIS  FAK+VA
Sbjct: 551 IPDIEVTTDGADYCFSDGIGKISLAFAKQVA 569

[Close]
BLAST of CsGy5G009080 vs. Swiss-Prot
Match: sp|Q7XM31|RDR2_ORYSJ (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 9.4e-72
Identity = 191/568 (33.63%), Postives = 298/568 (52.46%), Query Frame = 0 

Query: 11  PSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGG-GRLYAIVQFTSATQAELIISLANQ- 70
           PS V A+ +  F       G  +A ++    RG   R +  VQF SA        LA+  
Sbjct: 19  PSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQFGSAXXXXXXXXLASSG 78

Query: 71  RL-WYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRV--LWEG-NVDLV 130
           RL  +  + L    + VD++P+            L  G +V+   F     W+G   +++
Sbjct: 79  RLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFEAADAWDGVRAEVI 138

Query: 131 TFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIYKKVA 190
               G R+++ +L++ S  Y+LE+ +E +    L C  D  M  +L+QL+ APRI+  ++
Sbjct: 139 P---GKRRVDLYLEHDSQRYKLEVLFEDMKDC-LGCTLD-GMGAILLQLNYAPRIHTAIS 198

Query: 191 -PNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQNFA 250
            P     F +   +  KE +   WVR  DFT + S G+ S+L LKL     +    ++  
Sbjct: 199 GPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALVSDILKSLP 258

Query: 251 YYEEFEHEFRLIDEDANFSFCRDLAPIVD-SRSHVLPYKILFKINALVQYGCIPWPLLDA 310
           +      E  +   D       ++ P+V   R + +PY++LF++N+L+  G I    ++A
Sbjct: 259 FSGNL-GELTMNSMD-GVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVNA 318

Query: 311 SFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLDD- 370
             ++ ++ +    ++      EK+  L+   Y P  F+  Q   YS    ++ ++S +  
Sbjct: 319 DLFKALQEL---PVDVSRRIFEKMHKLESTCYGPLQFI--QQEAYSMKRSHNVLLSNEGE 378

Query: 371 -----GLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRST 430
                 L+   RV ITP K+F  GPE  V+N V++H S Y  +F+RV+FVDE+W K+ S 
Sbjct: 379 GEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSN 438

Query: 431 DLLPRMSSK--SEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGP 490
            +  R+     S+  KT +Y RILS+LK G  IG K F+FLAFS+SQLR NS+WMFAS  
Sbjct: 439 AISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNA 498

Query: 491 DIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKY 550
            ++A  IR WMG F +I++ +K AAR+GQ F SS +   V   + E+IPDIE+     KY
Sbjct: 499 SLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSKY 558

Query: 551 VFSDGIGKISSKFAKEVAANVVSKPSRL 563
           +FSDGIGKIS +FAK VA +V   P+ L
Sbjct: 559 IFSDGIGKISLRFAKRVAHHVGLDPTNL 574

[Close]
BLAST of CsGy5G009080 vs. Swiss-Prot
Match: sp|Q0DXS3|RDR1_ORYSJ (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2)

HSP 1 Score: 216.9 bits (551), Expect = 6.1e-55
Identity = 112/177 (63.28%), Postives = 137/177 (77.40%), Query Frame = 0 

Query: 376 VFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLPRMSSKSEDGKTDIYR 435
           V+F GPE+NVSNRV+R+FS  I+NFLR+SFVDE+ +K+R+TDL PR +S  +  +T +Y+
Sbjct: 9   VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68

Query: 436 RILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAYIRAWMGDFRHIKNPA 495
           R+LSVL +GI IG K F+FLAFSSSQLRDNS WMFAS   + A+ IR WMGDFR+I+N A
Sbjct: 69  RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128

Query: 496 KYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGIGKISSKFAKEVA 553
           KYAARLGQSF SSTE L V   E E I DI   +   ++VFSDGIGKISS FA EVA
Sbjct: 129 KYAARLGQSFSSSTETLKVQKYEVEEISDI---KNGTQHVFSDGIGKISSAFANEVA 182

[Close]
BLAST of CsGy5G009080 vs. Swiss-Prot
Match: sp|Q8LHH9|SHL2_ORYSJ (Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHL2 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 4.0e-38
Identity = 128/405 (31.60%), Postives = 191/405 (47.16%), Query Frame = 0 

Query: 169 LLIQLSGAPRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLK 228
           LL++L+ AP ++ + A +    F  P + F     DD W+RTTD T S +IG+     + 
Sbjct: 236 LLLRLAAAPLVHYRTADDD---FHEP-VPFDLLDDDDPWIRTTDITPSGAIGRCGVYRIS 295

Query: 229 LPNGRQLPPFKQNFAYYEEFEHEFRLIDEDANFSFCRDLA---------PIVD-----SR 288
             + R  P   +   Y    E    ++D    +   R L          P+ D       
Sbjct: 296 F-SARFWPKMDRALDYMR--ERRVAIVDCGGGWGPRRGLTVRDELEFGEPMQDVFFCLQH 355

Query: 289 SHVLPYKILFKINALVQYGCIPWPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNY 348
           +  L + +LF +NALV  G I    L   F+ L+ R   +       AL   +  K   +
Sbjct: 356 AEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLLGR---SEENVNVAALRDFWGDKFPVF 415

Query: 349 DPSNFLTEQYRKYSRHPPNSPVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFS 408
           D    L +   + +R+ P      + D    VRR+ ITP + +   PEV  SNRVLRH+ 
Sbjct: 416 DACGRLKKALNRVARN-PKLLCSKVGDDHAEVRRLVITPTRAYCLPPEVERSNRVLRHYH 475

Query: 409 QYIDNFLRVSFVDEEWDKMR-------STDLLPRMSSKSEDGKTDIYRRILSVLKNGIVI 468
           +  D FLRV+F+DE    +        +  ++  + S     KT +Y+R+  +L  G  +
Sbjct: 476 EVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHM 535

Query: 469 GDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGS 528
             + + FLAFSS+QLRD S W FA         IR WMG F   KN AK+AAR+GQ F S
Sbjct: 536 CGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWMGRFTS-KNVAKHAARMGQCFSS 595

Query: 529 STEALSVASNEREIIPDIEVQQGEIKYVFSDGIGKISSKFAKEVA 553
           +   +++  +E +   D  V     +Y+FSDGIGKI+   A EVA
Sbjct: 596 TYATVTMRPDEVDESFDDVVHN---EYIFSDGIGKITPDLALEVA 625

[Close]
BLAST of CsGy5G009080 vs. TrEMBL
Match: tr|E9NWK6|E9NWK6_CUCSA (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1a PE=2 SV=1)

HSP 1 Score: 1130.9 bits (2924), Expect = 0.0e+00
Identity = 553/553 (100.00%), Postives = 553/553 (100.00%), Query Frame = 0 

Query: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
           MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
           LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN
Sbjct: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120

Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
           VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180

Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
           KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ
Sbjct: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240

Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
           NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL
Sbjct: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300

Query: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
           DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD
Sbjct: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360

Query: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
           DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
           RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
           IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI
Sbjct: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540

Query: 541 GKISSKFAKEVAA 554
           GKISSKFAKEVAA
Sbjct: 541 GKISSKFAKEVAA 553

[Close]
BLAST of CsGy5G009080 vs. TrEMBL
Match: tr|A0A0A0KSM9|A0A0A0KSM9_CUCSA (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G239140 PE=3 SV=1)

HSP 1 Score: 1130.9 bits (2924), Expect = 0.0e+00
Identity = 553/553 (100.00%), Postives = 553/553 (100.00%), Query Frame = 0 

Query: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
           MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
           LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN
Sbjct: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120

Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
           VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180

Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
           KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ
Sbjct: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240

Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
           NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL
Sbjct: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300

Query: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
           DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD
Sbjct: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360

Query: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
           DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
           RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
           IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI
Sbjct: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540

Query: 541 GKISSKFAKEVAA 554
           GKISSKFAKEVAA
Sbjct: 541 GKISSKFAKEVAA 553

[Close]
BLAST of CsGy5G009080 vs. TrEMBL
Match: tr|A0A1S3CPY1|A0A1S3CPY1_CUCME (RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103502906 PE=3 SV=1)

HSP 1 Score: 1063.9 bits (2750), Expect = 1.3e-307
Identity = 516/552 (93.48%), Postives = 535/552 (96.92%), Query Frame = 0 

Query: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
           MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
           LI+SLANQRLWYGSSYLKAR+TEVDIVPKP+TYMY L++LLLCFGCQVS+EKFRVLWEGN
Sbjct: 61  LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120

Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
           VDLVTFGIGMRKMNFHLKY SVEYRLELSYE IWQIQLH P+ QSMKYLLIQL GAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180

Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
           KKVAP+SGQIFDNP+LNFF E  DDQWVRTTDFTSSCSIGQSSSLCLKLPNG +LP FKQ
Sbjct: 181 KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240

Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
           NFAYYEEFEHEFRLIDEDA+FSFCRDLAPIVDSR HVLPY+I+FKINALVQ+GCIPW LL
Sbjct: 241 NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300

Query: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
           D SFYRLVERIIT RIEFVEHALEKLFHLKECNYDPSNFLTEQ+R+YSRHPPNSPVISLD
Sbjct: 301 DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360

Query: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
           DGLVYVRRVQITPCKV+FCGPEVNVSNRVLRHFS+YIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361 DGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
           RMSSKSED KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421 RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
           IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQ GE+KYVFSDGI
Sbjct: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540

Query: 541 GKISSKFAKEVA 553
           GKISSKFAKEVA
Sbjct: 541 GKISSKFAKEVA 552

[Close]
BLAST of CsGy5G009080 vs. TrEMBL
Match: tr|A0A0S1YD00|A0A0S1YD00_CUCME (RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=RDR1a PE=2 SV=1)

HSP 1 Score: 1063.5 bits (2749), Expect = 1.7e-307
Identity = 516/552 (93.48%), Postives = 535/552 (96.92%), Query Frame = 0 

Query: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
           MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
           LI+SLANQRLWYGSSYLKAR+TEVDIVPKP+TYMYTL++LLLCFGCQVS+EKFRVLWEGN
Sbjct: 61  LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYTLKDLLLCFGCQVSSEKFRVLWEGN 120

Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
           VDLVTFGIGMRKMNFHLKY SVEYRLELSYE IWQIQLH P+ QSMKYLLIQL GAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180

Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
           KKVAP+SGQIFDNP+LNFF E  DDQWVRTTDFTSSCSIGQSSSLCLKLPNG +LP FKQ
Sbjct: 181 KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240

Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
           NFAYYEEFEHEFRLIDE A+FSFCRDLAPIVDSR HVLPY+I+FKINALVQ+GCIPW LL
Sbjct: 241 NFAYYEEFEHEFRLIDEGASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300

Query: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
           D SFYRLVERIIT RIEFVEHALEKLFHLKECNYDPSNFLTEQ+R+YSRHPPNSPVISLD
Sbjct: 301 DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360

Query: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
           DGLVYVRRVQITPCKV+FCGPEVNVSNRVLRHFS+YIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361 DGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
           RMSSKSED KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421 RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
           IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQ GE+KYVFSDGI
Sbjct: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540

Query: 541 GKISSKFAKEVA 553
           GKISSKFAKEVA
Sbjct: 541 GKISSKFAKEVA 552

[Close]
BLAST of CsGy5G009080 vs. TrEMBL
Match: tr|A0A2P4KFU4|A0A2P4KFU4_QUESU (RNA-dependent RNA polymerase OS=Quercus suber OX=58331 GN=CFP56_76852 PE=3 SV=1)

HSP 1 Score: 708.8 bits (1828), Expect = 1.0e-200
Identity = 353/555 (63.60%), Postives = 436/555 (78.56%), Query Frame = 0 

Query: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
           MGKT+ ++GF S VTA+AVK F+E +TG GT+YAIK+R  K      YAI+QFT+   AE
Sbjct: 1   MGKTVQLNGFHSAVTAEAVKEFVEQYTGEGTIYAIKIRQSKGKRALAYAIIQFTTTRCAE 60

Query: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
           LIISLA++RLWYG+SYL AR  E DIVPKPRT+++++E + L  GCQ+S  KF  LW+  
Sbjct: 61  LIISLASKRLWYGTSYLTAREMEHDIVPKPRTFLHSMENIELHLGCQISNGKFVTLWKAV 120

Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
              V FG G++K+ F L +  +EY+L+LSYE IWQI+LHCP DQS KYLLIQL GAPRIY
Sbjct: 121 NVSVKFGAGLQKLQFFLSHNYLEYKLDLSYENIWQIELHCPPDQSAKYLLIQLFGAPRIY 180

Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
           +K    SG  FDNP LN+F    DDQW+R TDFT SC +GQSS LCL+LP G QLP F++
Sbjct: 181 EKAVRTSGNEFDNPFLNYFMHIPDDQWIRATDFTPSCCVGQSSFLCLELPFGHQLPNFEE 240

Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHV-LPYKILFKINALVQYGCIPWPL 300
           NFA+Y+E   E  +++  ++FS   DL P+V     V LPY+ILFKIN+LVQ GC+  P 
Sbjct: 241 NFAFYKE-SKEIYILEPGSSFSSNLDLVPVVSPPPGVALPYEILFKINSLVQNGCLAGPT 300

Query: 301 LDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKY--SRHPPNSPVI 360
           LDA+FYRL++  I  +I ++E+ALEKLFHLKEC Y+PS +L+EQYRKY  SR+PP SP I
Sbjct: 301 LDANFYRLIDP-IKIKISYIEYALEKLFHLKECCYEPSKWLSEQYRKYITSRYPPKSPAI 360

Query: 361 SLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTD 420
           SLD GLVYVRRVQITPCKV+FCGPE+NVSNRVLR++ + IDNFLRVSFVDEE DKM STD
Sbjct: 361 SLDTGLVYVRRVQITPCKVYFCGPEINVSNRVLRNYPEDIDNFLRVSFVDEELDKMYSTD 420

Query: 421 LLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDID 480
           L PR SS +ED +T IY+RILS+L+NGIVIGDK F+FLAFSSSQLR+NSLWMFAS   ++
Sbjct: 421 LSPRASSGNEDRRTGIYKRILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFASREGLN 480

Query: 481 AAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFS 540
           AA IR WMG+FR IKN AKYAARLGQSF SSTE LSV+ +E +IIPDIE+++G + YVFS
Sbjct: 481 AAGIREWMGNFRQIKNVAKYAARLGQSFSSSTETLSVSRHEIDIIPDIEIKRGGVNYVFS 540

Query: 541 DGIGKISSKFAKEVA 553
           DGIGKIS++FAK+VA
Sbjct: 541 DGIGKISAEFAKKVA 553

The following BLAST results are available for this feature:
BLAST of CsGy5G009080 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50761.10.0e+00100.00hypothetical protein Csa_5G239140 [Cucumis sativus][more]
NP_001267692.10.0e+00100.00RNA-dependent RNA polymerase 1-like [Cucumis sativus] >XP_011654423.1 PREDICTED:... [more]
XP_008465250.11.9e-30793.48PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo] >XP_008465251.1 PREDICT... [more]
NP_001315397.12.5e-30793.48RNA-dependent RNA polymerase 1 [Cucumis melo] >ALM88236.1 RNA-dependent RNA poly... [more]
XP_022943173.11.9e-25478.46RNA-dependent RNA polymerase 1-like isoform X2 [Cucurbita moschata] >XP_02294317... [more]
BLAST of CsGy5G009080 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G14790.11.5e-17356.29RNA-dependent RNA polymerase 1[more]
AT4G11130.13.4e-8034.85RNA-dependent RNA polymerase 2[more]
AT3G49500.11.8e-3628.48RNA-dependent RNA polymerase 6[more]
BLAST of CsGy5G009080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LQV2|RDR1_ARATH2.7e-17256.29RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1[more]
sp|O82504|RDR2_ARATH6.1e-7934.85RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1[more]
sp|Q7XM31|RDR2_ORYSJ9.4e-7233.63Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947... [more]
sp|Q0DXS3|RDR1_ORYSJ6.1e-5563.28Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947... [more]
sp|Q8LHH9|SHL2_ORYSJ4.0e-3831.60Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica OX=39... [more]
BLAST of CsGy5G009080 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E9NWK6|E9NWK6_CUCSA0.0e+00100.00RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1a PE=2 SV=1[more]
tr|A0A0A0KSM9|A0A0A0KSM9_CUCSA0.0e+00100.00RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G239140 PE=3 SV=... [more]
tr|A0A1S3CPY1|A0A1S3CPY1_CUCME1.3e-30793.48RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103502906 PE=3 SV=1[more]
tr|A0A0S1YD00|A0A0S1YD00_CUCME1.7e-30793.48RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=RDR1a PE=2 SV=1[more]
tr|A0A2P4KFU4|A0A2P4KFU4_QUESU1.0e-20063.60RNA-dependent RNA polymerase OS=Quercus suber OX=58331 GN=CFP56_76852 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003968RNA-directed RNA polymerase activity
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR007855RNA-dep_RNA_pol_euk-typ
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031047 gene silencing by RNA
biological_process GO:0001172 transcription, RNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
molecular_function GO:0003968 RNA-directed RNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G009080.1CsGy5G009080.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007855RNA-dependent RNA polymerase, eukaryotic-typePFAMPF05183RdRPcoord: 371..556
e-value: 2.9E-47
score: 161.5
IPR007855RNA-dependent RNA polymerase, eukaryotic-typePANTHERPTHR23079RNA-DEPENDENT RNA POLYMERASEcoord: 3..556
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 1..85
e-value: 7.5E-6
score: 27.9
NoneNo IPR availablePANTHERPTHR23079:SF5RNA-DEPENDENT RNA POLYMERASE 2coord: 3..556
NoneNo IPR availableCDDcd00590RRM_SFcoord: 5..73
e-value: 1.10067E-7
score: 48.4553
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 3..89
score: 9.149
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 3..73

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy5G009080Cla97C07G133680Watermelon (97103) v2cgybwmbB375
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy5G009080Cucumber (Chinese Long) v3cgybcucB232
CsGy5G009080Wax gourdcgybwgoB487
CsGy5G009080Cucurbita maxima (Rimu)cgybcmaB673
CsGy5G009080Cucurbita moschata (Rifu)cgybcmoB651
CsGy5G009080Cucurbita pepo (Zucchini)cgybcpeB646
CsGy5G009080Cucumber (Chinese Long) v2cgybcuB224
CsGy5G009080Bottle gourd (USVL1VR-Ls)cgyblsiB338
CsGy5G009080Melon (DHL92) v3.5.1cgybmeB312
CsGy5G009080Melon (DHL92) v3.5.1cgybmeB320
CsGy5G009080Melon (DHL92) v3.6.1cgybmedB311
CsGy5G009080Watermelon (Charleston Gray)cgybwcgB369
CsGy5G009080Watermelon (97103) v1cgybwmB359
CsGy5G009080Wild cucumber (PI 183967)cgybcpiB226
CsGy5G009080Silver-seed gourdcarcgybB0670