CsGy5G008830 (gene) Cucumber (Gy14) v2

Overview
NameCsGy5G008830
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionexopolygalacturonase-like
LocationChr5 : 6852299 .. 6853183 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGAAATCTTAGCCTCATTCAAATCATTCTCTTAGAATTTGCTTGGCAATCCTGTGCTGTCATTTTCAATGACATCACCGGCACTCAAAATCTTCTCAAGGGGATCGTACCAACAACAAATAAGCAGTTTCTTCGTCCTGCAGAAGCACCTCGGCATCTTGGCTTTAATACTCTTCCCGATATTGGCGGCACGGTGAATGACATTAACGCAAATGTTGATCTAAATGAGAATGGTGGGTCAGTTTTTGATGTTACAAAACATGGAGCTAAAGCTGATGGAAAGACTGATGATGCACAAGTGAGAAATATCAACATACACTAACTTCAAACCTTTTAATTTAACTAGTTAATTATCTTTAAATTGATGACTATAGAAAATTGTATATATTTTTTGCTATTAAATTCTACCGTTATATTATTCTAAACCGATCTCAATTTTTCTTCTATTCTTTTTTGGTAGATATGGATGGTACAATTATTTCAACATTTTTTGGCAAAAAGAGTTGTAATTATTTTTTTATTTTCCATTTGATAGGCATTCATGACAACATGGATTGCAGCTTGTCGGAACACAGTCGGTCCGGCGAAGTTCTTGATCCCACAAGGCACATTTCTAGTGGGGCCGGTGACTTTCGCTGGTCCGTGCAAAAGTTATCCGATCACCCTCGAAAATCAAGGAACTGTAAAGGCCACGACCGATATTAGTGCATATTCATCTCCAGAATGGTTCTCCATTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGATGGCCAAGGCCTCTCAGTTTGGCCCTACAACGACTGCAAGAAAAACAACTTATGCCAACTTCTTCCAATCGTAACTATATATTTTTGCCTTTCATTTTAA

mRNA sequence

ATGACAAGAAATCTTAGCCTCATTCAAATCATTCTCTTAGAATTTGCTTGGCAATCCTGTGCTGTCATTTTCAATGACATCACCGGCACTCAAAATCTTCTCAAGGGGATCGTACCAACAACAAATAAGCAGTTTCTTCGTCCTGCAGAAGCACCTCGGCATCTTGGCTTTAATACTCTTCCCGATATTGGCGGCACGGTGAATGACATTAACGCAAATGTTGATCTAAATGAGAATGGTGGGTCAGTTTTTGATGTTACAAAACATGGAGCTAAAGCTGATGGAAAGACTGATGATGCACAAGCATTCATGACAACATGGATTGCAGCTTGTCGGAACACAGTCGGTCCGGCGAAGTTCTTGATCCCACAAGGCACATTTCTAGTGGGGCCGGTGACTTTCGCTGGTCCGTGCAAAAGTTATCCGATCACCCTCGAAAATCAAGGAACTGTAAAGGCCACGACCGATATTAGTGCATATTCATCTCCAGAATGGTTCTCCATTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGATGGCCAAGGCCTCTCAGTTTGGCCCTACAACGACTGCAAGAAAAACAACTTATGCCAACTTCTTCCAATCGTAACTATATATTTTTGCCTTTCATTTTAA

Coding sequence (CDS)

ATGACAAGAAATCTTAGCCTCATTCAAATCATTCTCTTAGAATTTGCTTGGCAATCCTGTGCTGTCATTTTCAATGACATCACCGGCACTCAAAATCTTCTCAAGGGGATCGTACCAACAACAAATAAGCAGTTTCTTCGTCCTGCAGAAGCACCTCGGCATCTTGGCTTTAATACTCTTCCCGATATTGGCGGCACGGTGAATGACATTAACGCAAATGTTGATCTAAATGAGAATGGTGGGTCAGTTTTTGATGTTACAAAACATGGAGCTAAAGCTGATGGAAAGACTGATGATGCACAAGCATTCATGACAACATGGATTGCAGCTTGTCGGAACACAGTCGGTCCGGCGAAGTTCTTGATCCCACAAGGCACATTTCTAGTGGGGCCGGTGACTTTCGCTGGTCCGTGCAAAAGTTATCCGATCACCCTCGAAAATCAAGGAACTGTAAAGGCCACGACCGATATTAGTGCATATTCATCTCCAGAATGGTTCTCCATTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGATGGCCAAGGCCTCTCAGTTTGGCCCTACAACGACTGCAAGAAAAACAACTTATGCCAACTTCTTCCAATCGTAACTATATATTTTTGCCTTTCATTTTAA

Protein sequence

MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPIVTIYFCLSF
Homology
[Close]
BLAST of CsGy5G008830 vs. NCBI nr
Match: XP_011656188.1 (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 428.3 bits (1100), Expect = 1.5e-116
Identity = 205/206 (99.51%), Postives = 206/206 (100.00%), Query Frame = 0 

Query: 1   MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTL 60
           MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTL
Sbjct: 1   MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTL 60

Query: 61  PDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120
           PDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  PDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQGTFLVGPVTFAGPCKSYPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQGTFLVGPVTFAGPCKSYPITLENQGTVKATTDISAYSSPEWFS+EDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSYPITLENQGTVKATTDISAYSSPEWFSLEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQLLPI 207
           VFDGQGLSVWPYNDCKKNNLCQLLPI
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQLLPI 206

[Close]
BLAST of CsGy5G008830 vs. NCBI nr
Match: KGN44638.1 (hypothetical protein Csa_7G353000 [Cucumis sativus])

HSP 1 Score: 406.8 bits (1044), Expect = 4.7e-110
Identity = 194/213 (91.08%), Postives = 203/213 (95.31%), Query Frame = 0 

Query: 1   MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTL 60
           MTRNLSLIQI+LL FAWQ CAV+F DITGTQN LKGIVPTTN+QFLRP EAPR LGFNTL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60

Query: 61  PDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120
            +IGGTVNDI ANVDLNENG S+FDVTKHGAKA+GKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQGTFLVGPVTFAGPCKSYPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQGTFLVGPVTFAGPCKS+PITLEN+GTVKATTDISAYSSPEWFS+EDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQLLPIVTIYFCL 214
           VFDGQGLSVW YNDCKKNNLCQLLPIVTIYFCL
Sbjct: 181 VFDGQGLSVWSYNDCKKNNLCQLLPIVTIYFCL 213

[Close]
BLAST of CsGy5G008830 vs. NCBI nr
Match: KGN44961.1 (hypothetical protein Csa_7G398720 [Cucumis sativus])

HSP 1 Score: 399.1 bits (1024), Expect = 9.8e-108
Identity = 190/210 (90.48%), Postives = 199/210 (94.76%), Query Frame = 0 

Query: 1   MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTL 60
           MTRN SLIQI+LL FA Q CAVIF+D+TGTQNLLKGIVP  NKQFLRPAE+PRHLGF+TL
Sbjct: 1   MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTL 60

Query: 61  PDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120
           P+IGG VNDI ANVDLNENGGSVFDVTKHGAK DG+TDDA AFMTTWIAACRNTVGP KF
Sbjct: 61  PNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKF 120

Query: 121 LIPQGTFLVGPVTFAGPCKSYPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQGTFLVGPVTFAGPCKS+PITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQLLPIVTIY 211
           VFDGQGLSVWPYNDCKKNNLCQLLPIVTI+
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQLLPIVTIF 210

[Close]
BLAST of CsGy5G008830 vs. NCBI nr
Match: KGN50738.1 (hypothetical protein Csa_5G222970 [Cucumis sativus])

HSP 1 Score: 361.7 bits (927), Expect = 1.7e-96
Identity = 171/173 (98.84%), Postives = 172/173 (99.42%), Query Frame = 0 

Query: 34  LKGIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAKA 93
           L GIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAKA
Sbjct: 6   LYGIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAKA 65

Query: 94  DGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVKA 153
           DGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVKA
Sbjct: 66  DGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVKA 125

Query: 154 TTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 207
           TTDISAYSSPEWFS+EDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPI
Sbjct: 126 TTDISAYSSPEWFSLEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 178

[Close]
BLAST of CsGy5G008830 vs. NCBI nr
Match: KGN44960.1 (hypothetical protein Csa_7G398220 [Cucumis sativus])

HSP 1 Score: 320.5 bits (820), Expect = 4.4e-84
Identity = 164/225 (72.89%), Postives = 181/225 (80.44%), Query Frame = 0 

Query: 1   MTRNLSLIQIILLEFAWQSC---AVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGF 60
           MTRN SLIQI+LL FAW+ C   A IF D   TQ LL GIVP  N+QFLRPAEAP HLGF
Sbjct: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60

Query: 61  NTLPDI-GGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVG 120
           +TLP+I GGTVNDI  NVDLNENGG VFDVTKHGAKADG+TDDAQAFMTTWIAACRNTVG
Sbjct: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120

Query: 121 PAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVKATTDISAYSSPEWFSIEDITGFIL 180
           PAKFLIPQ  FLVGPVTFAGPCKS+PITLENQGTVKATTDISAYSS EWFSIED+TGFIL
Sbjct: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180

Query: 181 TGSGVFDGQGLSVWPYNDCKKNNLCQLLPI------VTIYFCLSF 216
           TGSGVFDGQG+S   ++      +  L  I       ++++C +F
Sbjct: 181 TGSGVFDGQGVSSIKFSRLNHTIIDGLTSINSMGFHTSVFYCYNF 225

[Close]
BLAST of CsGy5G008830 vs. TAIR10
Match: AT1G02790.1 (polygalacturonase 4)

HSP 1 Score: 125.6 bits (314), Expect = 3.8e-29
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 0 

Query: 77  NENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAG 136
           N    +V+D+TK GA  DG T+  +AF+ TWI  C + V PA  L+P+GTFL GPV FAG
Sbjct: 45  NSGNPTVYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPV-PATLLVPKGTFLAGPVIFAG 104

Query: 137 PCKSYPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCK 196
           PCKS  +T+   GT+ ATT  S Y++PEWF  E +   +LTG+G F G+G +VW  + C 
Sbjct: 105 PCKS-KVTVNVIGTIIATT--SGYATPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCG 164

Query: 197 KNNLCQLLP 206
           K   C L P
Sbjct: 165 KKVQCNLPP 169

[Close]
BLAST of CsGy5G008830 vs. TAIR10
Match: AT2G15460.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 114.8 bits (286), Expect = 6.7e-26
Identity = 54/122 (44.26%), Postives = 70/122 (57.38%), Query Frame = 0 

Query: 83  VFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYP 142
           VF+V +HGAK DGKTD+A AF + W  AC+   G +K  +P+GTF +G V F GPCK+ P
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 143 ITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQ 202
           I     GT+ A  + S      W +   I    ++GSG  DGQG   WP+NDC  N  C 
Sbjct: 90  IEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPNCP 149

Query: 203 LL 205
            L
Sbjct: 150 KL 150

[Close]
BLAST of CsGy5G008830 vs. TAIR10
Match: AT2G15450.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 114.8 bits (286), Expect = 6.7e-26
Identity = 54/122 (44.26%), Postives = 70/122 (57.38%), Query Frame = 0 

Query: 83  VFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYP 142
           VF+V +HGAK DGKTD+A AF + W  AC+   G +K  +P+GTF +G V F GPCK+ P
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 143 ITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQ 202
           I     GT+ A  + S      W +   I    ++GSG  DGQG   WP+NDC  N  C 
Sbjct: 90  IEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPNCP 149

Query: 203 LL 205
            L
Sbjct: 150 KL 150

[Close]
BLAST of CsGy5G008830 vs. TAIR10
Match: AT2G26620.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-25
Identity = 53/124 (42.74%), Postives = 70/124 (56.45%), Query Frame = 0 

Query: 83  VFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYP 142
           VF+V +HG+K DGKTD+  AF + W  AC+   G +K  +P+GTF +G V F GPCK+ P
Sbjct: 30  VFNVQRHGSKPDGKTDNTNAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 143 ITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQ 202
           I     GT+ A  + +      W +   I    ++GSG  DGQG   WP NDC KN  C 
Sbjct: 90  IEFIIDGTLLAPANPNDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPLNDCHKNPNCP 149

Query: 203 LLPI 207
            L I
Sbjct: 150 KLAI 152

[Close]
BLAST of CsGy5G008830 vs. TAIR10
Match: AT2G15470.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 110.9 bits (276), Expect = 9.7e-25
Identity = 53/122 (43.44%), Postives = 69/122 (56.56%), Query Frame = 0 

Query: 83  VFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYP 142
           VF+V +HGAK DGKTD+A AF + W  AC+   G +K  +P+GTF +G V F G CK+ P
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGLCKN-P 89

Query: 143 ITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQ 202
           I     GT+ A  + S      W +   I    ++GSG  DGQG   WP+NDC  N  C 
Sbjct: 90  IEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPNCP 149

Query: 203 LL 205
            L
Sbjct: 150 KL 150

[Close]
BLAST of CsGy5G008830 vs. Swiss-Prot
Match: sp|P49062|PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.9e-28
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 0 

Query: 77  NENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAG 136
           N    +V+D+TK GA  DG T+  +AF+ TWI  C + V PA  L+P+GTFL GPV FAG
Sbjct: 45  NSGNPTVYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPV-PATLLVPKGTFLAGPVIFAG 104

Query: 137 PCKSYPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCK 196
           PCKS  +T+   GT+ ATT  S Y++PEWF  E +   +LTG+G F G+G +VW  + C 
Sbjct: 105 PCKS-KVTVNVIGTIIATT--SGYATPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCG 164

Query: 197 KNNLCQLLP 206
           K   C L P
Sbjct: 165 KKVQCNLPP 169

[Close]
BLAST of CsGy5G008830 vs. Swiss-Prot
Match: sp|P35339|PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-24
Identity = 56/126 (44.44%), Postives = 73/126 (57.94%), Query Frame = 0 

Query: 81  GSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKS 140
           G  FD+TK GA  +GKTD  +A    W +AC  T G    LIP+G FLVGP+ F GPCK 
Sbjct: 38  GGSFDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDFLVGPLNFTGPCKG 97

Query: 141 YPITLENQGTVKATTDISAYSS-PEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNN 200
             +T++  G + ATTD+S Y     W  I  +   ++TG G  DGQG +VW  N C K  
Sbjct: 98  -DVTIQVNGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGKLDGQGPAVWSKNSCVKKY 157

Query: 201 LCQLLP 206
            C++LP
Sbjct: 158 DCKILP 161

[Close]
BLAST of CsGy5G008830 vs. Swiss-Prot
Match: sp|P26216|PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.9e-24
Identity = 57/134 (42.54%), Postives = 76/134 (56.72%), Query Frame = 0 

Query: 74  VDLNENG-GSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPV 133
           +D   +G G  FD+TK GA  +GKTD  +A    W +AC  T G    LIP+G FLVG +
Sbjct: 30  IDAKASGPGGSFDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDFLVGQL 89

Query: 134 TFAGPCKSYPITLENQGTVKATTDISAYSS-PEWFSIEDITGFILTGSGVFDGQGLSVWP 193
            F GPCK   +T++  G + ATTD+S Y     W  I  +   ++TG G  DGQG +VW 
Sbjct: 90  NFTGPCKG-DVTIQVDGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGNLDGQGPAVWS 149

Query: 194 YNDCKKNNLCQLLP 206
            N C K   C++LP
Sbjct: 150 KNSCTKKYDCKILP 161

[Close]
BLAST of CsGy5G008830 vs. Swiss-Prot
Match: sp|P35338|PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.9e-24
Identity = 57/134 (42.54%), Postives = 76/134 (56.72%), Query Frame = 0 

Query: 74  VDLNENG-GSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPV 133
           +D   +G G  FD+TK GA  +GKTD  +A    W +AC  T G    LIP+G FLVG +
Sbjct: 30  IDAKASGPGGSFDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDFLVGQL 89

Query: 134 TFAGPCKSYPITLENQGTVKATTDISAYSS-PEWFSIEDITGFILTGSGVFDGQGLSVWP 193
            F GPCK   +T++  G + ATTD+S Y     W  I  +   ++TG G  DGQG +VW 
Sbjct: 90  NFTGPCKG-DVTIQVDGNLLATTDLSQYKEHGNWIEILRVDNLVITGKGNLDGQGPAVWS 149

Query: 194 YNDCKKNNLCQLLP 206
            N C K   C++LP
Sbjct: 150 KNSCTKKYDCKILP 161

[Close]
BLAST of CsGy5G008830 vs. Swiss-Prot
Match: sp|Q39766|PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-21
Identity = 50/121 (41.32%), Postives = 70/121 (57.85%), Query Frame = 0 

Query: 86  VTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITL 145
           V K GAKADGKTD ++ F+  W  AC  +V P+  +IP+GT+L+  V   GPCK+ PI +
Sbjct: 32  VAKFGAKADGKTDLSKPFLDAWKEACA-SVTPSTVVIPKGTYLLSKVNLEGPCKA-PIEI 91

Query: 146 ENQGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLP 205
             QGT++A  D SA+  P W     +  F + G G+FDGQG   +  N C+       LP
Sbjct: 92  NVQGTIQAPADPSAFKDPNWVRFYSVENFKMFGGGIFDGQGSIAYEKNTCENREFRSKLP 150

Query: 206 I 207
           +
Sbjct: 152 V 150

[Close]
BLAST of CsGy5G008830 vs. TrEMBL
Match: tr|A0A0A0K588|A0A0A0K588_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G353000 PE=3 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 3.1e-110
Identity = 194/213 (91.08%), Postives = 203/213 (95.31%), Query Frame = 0 

Query: 1   MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTL 60
           MTRNLSLIQI+LL FAWQ CAV+F DITGTQN LKGIVPTTN+QFLRP EAPR LGFNTL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60

Query: 61  PDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120
            +IGGTVNDI ANVDLNENG S+FDVTKHGAKA+GKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQGTFLVGPVTFAGPCKSYPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQGTFLVGPVTFAGPCKS+PITLEN+GTVKATTDISAYSSPEWFS+EDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQLLPIVTIYFCL 214
           VFDGQGLSVW YNDCKKNNLCQLLPIVTIYFCL
Sbjct: 181 VFDGQGLSVWSYNDCKKNNLCQLLPIVTIYFCL 213

[Close]
BLAST of CsGy5G008830 vs. TrEMBL
Match: tr|A0A0A0KAZ2|A0A0A0KAZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398720 PE=3 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 6.5e-108
Identity = 190/210 (90.48%), Postives = 199/210 (94.76%), Query Frame = 0 

Query: 1   MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTL 60
           MTRN SLIQI+LL FA Q CAVIF+D+TGTQNLLKGIVP  NKQFLRPAE+PRHLGF+TL
Sbjct: 1   MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTL 60

Query: 61  PDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120
           P+IGG VNDI ANVDLNENGGSVFDVTKHGAK DG+TDDA AFMTTWIAACRNTVGP KF
Sbjct: 61  PNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKF 120

Query: 121 LIPQGTFLVGPVTFAGPCKSYPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQGTFLVGPVTFAGPCKS+PITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQLLPIVTIY 211
           VFDGQGLSVWPYNDCKKNNLCQLLPIVTI+
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQLLPIVTIF 210

[Close]
BLAST of CsGy5G008830 vs. TrEMBL
Match: tr|A0A0A0KMA6|A0A0A0KMA6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222970 PE=3 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 1.2e-96
Identity = 171/173 (98.84%), Postives = 172/173 (99.42%), Query Frame = 0 

Query: 34  LKGIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAKA 93
           L GIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAKA
Sbjct: 6   LYGIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAKA 65

Query: 94  DGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVKA 153
           DGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVKA
Sbjct: 66  DGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVKA 125

Query: 154 TTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 207
           TTDISAYSSPEWFS+EDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPI
Sbjct: 126 TTDISAYSSPEWFSLEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 178

[Close]
BLAST of CsGy5G008830 vs. TrEMBL
Match: tr|A0A0A0K5I2|A0A0A0K5I2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398220 PE=3 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 2.9e-84
Identity = 164/225 (72.89%), Postives = 181/225 (80.44%), Query Frame = 0 

Query: 1   MTRNLSLIQIILLEFAWQSC---AVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGF 60
           MTRN SLIQI+LL FAW+ C   A IF D   TQ LL GIVP  N+QFLRPAEAP HLGF
Sbjct: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60

Query: 61  NTLPDI-GGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVG 120
           +TLP+I GGTVNDI  NVDLNENGG VFDVTKHGAKADG+TDDAQAFMTTWIAACRNTVG
Sbjct: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120

Query: 121 PAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVKATTDISAYSSPEWFSIEDITGFIL 180
           PAKFLIPQ  FLVGPVTFAGPCKS+PITLENQGTVKATTDISAYSS EWFSIED+TGFIL
Sbjct: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180

Query: 181 TGSGVFDGQGLSVWPYNDCKKNNLCQLLPI------VTIYFCLSF 216
           TGSGVFDGQG+S   ++      +  L  I       ++++C +F
Sbjct: 181 TGSGVFDGQGVSSIKFSRLNHTIIDGLTSINSMGFHTSVFYCYNF 225

[Close]
BLAST of CsGy5G008830 vs. TrEMBL
Match: tr|A0A1S3BRD3|A0A1S3BRD3_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103492867 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.2e-80
Identity = 154/210 (73.33%), Postives = 168/210 (80.00%), Query Frame = 0 

Query: 1   MTRNLSLIQIILLEFAWQSC---AVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGF 60
           +TR++ L QI+L  FAWQ C   + I NDI    NL   IV T N+Q   P  AP  LG 
Sbjct: 3   ITRDIGLFQILLWVFAWQCCDKVSAITNDIA---NLNYEIVSTINQQLPSPVAAPGPLGI 62

Query: 61  NTLPDIGGTVN-DINANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVG 120
            TLPD+   VN DIN N DLN NGGSVF VTKHGAKADGKTDDAQAF+TTWI ACRNTVG
Sbjct: 63  ETLPDLDNMVNDDINTNNDLNGNGGSVFHVTKHGAKADGKTDDAQAFVTTWIEACRNTVG 122

Query: 121 PAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVKATTDISAYSSPEWFSIEDITGFIL 180
           PAK LIP+GT+LVGPVT AGPCKS+PITLENQGTVKATTDIS YSSPEWFSIEDITGFIL
Sbjct: 123 PAKILIPEGTYLVGPVTLAGPCKSFPITLENQGTVKATTDISQYSSPEWFSIEDITGFIL 182

Query: 181 TGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 207
           TGSGVFDGQG++ WPYNDCK NN+CQLLPI
Sbjct: 183 TGSGVFDGQGVAAWPYNDCKNNNICQLLPI 209

The following BLAST results are available for this feature:
BLAST of CsGy5G008830 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011656188.11.5e-11699.51PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
KGN44638.14.7e-11091.08hypothetical protein Csa_7G353000 [Cucumis sativus][more]
KGN44961.19.8e-10890.48hypothetical protein Csa_7G398720 [Cucumis sativus][more]
KGN50738.11.7e-9698.84hypothetical protein Csa_5G222970 [Cucumis sativus][more]
KGN44960.14.4e-8472.89hypothetical protein Csa_7G398220 [Cucumis sativus][more]
BLAST of CsGy5G008830 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G02790.13.8e-2948.06polygalacturonase 4[more]
AT2G15460.16.7e-2644.26Pectin lyase-like superfamily protein[more]
AT2G15450.16.7e-2644.26Pectin lyase-like superfamily protein[more]
AT2G26620.12.0e-2542.74Pectin lyase-like superfamily protein[more]
AT2G15470.19.7e-2543.44Pectin lyase-like superfamily protein[more]
BLAST of CsGy5G008830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P49062|PGLR1_ARATH6.9e-2848.06Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 ... [more]
sp|P35339|PGLR3_MAIZE1.2e-2444.44Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1[more]
sp|P26216|PGLR1_MAIZE7.9e-2442.54Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1[more]
sp|P35338|PGLR2_MAIZE7.9e-2442.54Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1[more]
sp|Q39766|PGLR_GOSBA2.1e-2141.32Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1[more]
BLAST of CsGy5G008830 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K588|A0A0A0K588_CUCSA3.1e-11091.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G353000 PE=3 SV=1[more]
tr|A0A0A0KAZ2|A0A0A0KAZ2_CUCSA6.5e-10890.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398720 PE=3 SV=1[more]
tr|A0A0A0KMA6|A0A0A0KMA6_CUCSA1.2e-9698.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222970 PE=3 SV=1[more]
tr|A0A0A0K5I2|A0A0A0K5I2_CUCSA2.9e-8472.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398220 PE=3 SV=1[more]
tr|A0A1S3BRD3|A0A1S3BRD3_CUCME1.2e-8073.33exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103492867 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
IPR000743Glyco_hydro_28
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0071555 cell wall organization
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G008830.1CsGy5G008830.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 115..207
e-value: 1.3E-13
score: 50.6
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 72..213
e-value: 1.5E-27
score: 98.6
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 66..206
NoneNo IPR availablePANTHERPTHR31375:SF17EXOPOLYGALACTURONASE CLONE GBGE184coord: 66..206
IPR011050Pectin lyase fold/virulence factorSUPERFAMILYSSF51126Pectin lyase-likecoord: 82..199