CsGy5G008460 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G008460
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr5 : 6461690 .. 6462901 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTTGAAGGTGATGAGAAAAAGAAAATGTGATAGCAGTACAAATCAACAAAGATGAGATTTGCTAGTTATTAACAATCATTCCACATAAGGGGTTTTACATCCACAAGAGAAACAATAAGAAAGTGTGCCTCTACTAGATTGTTACATCAGTTCTTGGTCCTGATAGAGTTGTTTTCCTATTCTTGCTCGAGTATCTAATTTAACAAAGCGTTTGAGATCTGCATAGGAAAGGGTTTGGATATTCTTCCTTCGCAATTTGCTTAGAGGTGGATGTTTATCAAGCCAAACAGAGTACTCTAAGTCTGCCATACCTTTTGGATCTGCGCCTTCTTTGAGAATATTGGCACCAACTACAGTAGTAGACCTCACCTCTTTACTTAGAATCGATGCTTCAGGAGCATCAACAGCTGCTCCCCCTTTAGACCCCTTCTTTGATTTGCCTCGTTTGGACAGATGTCAGTTGTATTGGGTCTTTGCTATTAACAATAATGCTCCTTCTAAACAGACTAACTTGGTTCAAACCCATATTTTTATTCTCTGCAACACAAAAACGAACAAATTCATTAGTTCTGATGAACTACTTCAACAACTATGGTAGTCAGTGTTTCTTTGAATCAGCTATGATAAGAATCCAACAGCTTGATACAACAGTAACACCTCAAAGGCCATGTGTACCTTAGGGATTGTATATCTTACAAAACACATAAACTTCCAGATATGGTTTCAAATAGAAAAAAACAAACAAAATGCAATGCGATGTCTGAACTTCTTGAAAACATGTGCTGATGTGCCAGAACAACTCTTTCTCCAAGTATAACAGAGACAAAGAAAGGCCAAAAATTATAAAACTAAACTTACTAGTTACTCCAATCTATAGAAAGTGGCAGATAAATAATTTCTTTACCAGCCATGTCCATGTCCTCTTCAACTTTCCACTTGTTAAAGTTTGGGTATGAACGTATGAAGTACGAAAAATTAGTTGTTTTTTATATAGCAAAGCTGGTGCATTTCTTTTTGCAAGTCGGGAATAAATCTCTCTTCGCTAGAAAGCATATCTCTCCTAAATAGCTTATGTTTTTATCACAAAAACTATACAGCATTTTATTATATAGGACAACGTTGATCTCTCAAATGGAGACATCTACTAATGAAGCTGAAAGAAAAACAAAAGATATAACTCAAACTGCAAATCAATTGCTTGCCTAA

mRNA sequence

ATGGACTTTGAAGGTGATGAGAAAAAGAAAATAGGTGGATGTTTATCAAGCCAAACAGAGTACTCTAAGTCTGCCATACCTTTTGGATCTGCGCCTTCTTTGAGAATATTGGCACCAACTACAGTAGTAGACCTCACCTCTTTACTTAGAATCGATGCTTCAGGAGCATCAACAGCTGCTCCCCCTTTAGACCCCTTCTTTGATTTGCCTCGTTTGGACAGATGTCAGTTGACAACGTTGATCTCTCAAATGGAGACATCTACTAATGAAGCTGAAAGAAAAACAAAAGATATAACTCAAACTGCAAATCAATTGCTTGCCTAA

Coding sequence (CDS)

ATGGACTTTGAAGGTGATGAGAAAAAGAAAATAGGTGGATGTTTATCAAGCCAAACAGAGTACTCTAAGTCTGCCATACCTTTTGGATCTGCGCCTTCTTTGAGAATATTGGCACCAACTACAGTAGTAGACCTCACCTCTTTACTTAGAATCGATGCTTCAGGAGCATCAACAGCTGCTCCCCCTTTAGACCCCTTCTTTGATTTGCCTCGTTTGGACAGATGTCAGTTGACAACGTTGATCTCTCAAATGGAGACATCTACTAATGAAGCTGAAAGAAAAACAAAAGATATAACTCAAACTGCAAATCAATTGCTTGCCTAA

Protein sequence

MDFEGDEKKKIGGCLSSQTEYSKSAIPFGSAPSLRILAPTTVVDLTSLLRIDASGASTAAPPLDPFFDLPRLDRCQLTTLISQMETSTNEAERKTKDITQTANQLLA

Homology

[Close]

BLAST of CsGy5G008460 vs. NCBI nr
Match: CDP01558.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 80.1 bits (196), Expect = 5.0e-12
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 17 SQTEYSKSAIPFGSAPSLRILAPTTVVDLTSLLRIDASGASTAAPPLDPFFDLP 71
          S + YS+S   FGSAPSLRILAPTTVVDLTSLLR+D+ GAS AAPPL+PFF  P
Sbjct: 4  SHSRYSESGKIFGSAPSLRILAPTTVVDLTSLLRVDSFGASAAAPPLEPFFAFP 57

[Close]

BLAST of CsGy5G008460 vs. TrEMBL
Match: tr|A0A068U1S3|A0A068U1S3_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00036650001 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.3e-12
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 17 SQTEYSKSAIPFGSAPSLRILAPTTVVDLTSLLRIDASGASTAAPPLDPFFDLP 71
          S + YS+S   FGSAPSLRILAPTTVVDLTSLLR+D+ GAS AAPPL+PFF  P
Sbjct: 4  SHSRYSESGKIFGSAPSLRILAPTTVVDLTSLLRVDSFGASAAAPPLEPFFAFP 57

[Close]

BLAST of CsGy5G008460 vs. TrEMBL
Match: tr|A0A2P2J9M4|A0A2P2J9M4_RHIMU (Uncharacterized protein MANES_15G156800 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 17  SQTEYSKSAIPFGSAPSLRILAPTTVVDLTSLLRIDASGASTAAPPLDPFFDLP 71
           SQ  YS+S   FGSAPSLR+LAPTTVVDLTSLL +    +  A PPL PFF LP
Sbjct: 96  SQLGYSESGKTFGSAPSLRMLAPTTVVDLTSLLSVSFGASDAALPPLAPFFALP 149

[Close]

BLAST of CsGy5G008460 vs. TrEMBL
Match: tr|K4BPR6|K4BPR6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 34/53 (64.15%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 17 SQTEYSKSAIPFGSAPSLRILAPTTVVDLTSLLRIDASGASTAAPPLDPFFDL 70
          S +EYS+S    G APSL I APTT V LTSLL + A  AS AAPPL PFFDL
Sbjct: 19 SHSEYSESCNILGFAPSLGIFAPTTAVALTSLLIVHAFEASAAAPPLPPFFDL 71

The following BLAST results are available for this feature:

BLAST of CsGy5G008460 vs. NCBI nr


Match Name	E-value	Identity	Description
CDP01558.1	5.0e-12	74.07	unnamed protein product [Coffea canephora]	[more]

BLAST of CsGy5G008460 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G008460 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G008460 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A068U1S3\|A0A068U1S3_COFCA	3.3e-12	74.07	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00036650001 PE=4 ...	[more]
tr\|A0A2P2J9M4\|A0A2P2J9M4_RHIMU	1.3e-08	64.81	Uncharacterized protein MANES_15G156800 OS=Rhizophora mucronata OX=61149 PE=4 SV...	[more]
tr\|K4BPR6\|K4BPR6_SOLLC	1.2e-06	64.15	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G008460.1	CsGy5G008460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..107

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G008460	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G008460	Cucumber (Chinese Long) v3	cgybcucB242
CsGy5G008460	Watermelon (97103) v2	cgybwmbB347
CsGy5G008460	Watermelon (97103) v2	cgybwmbB375
CsGy5G008460	Wax gourd	cgybwgoB469
CsGy5G008460	Wax gourd	cgybwgoB487
CsGy5G008460	Cucumber (Gy14) v2	cgybcgybB145
CsGy5G008460	Cucurbita maxima (Rimu)	cgybcmaB673
CsGy5G008460	Cucurbita maxima (Rimu)	cgybcmaB674
CsGy5G008460	Cucurbita moschata (Rifu)	cgybcmoB651
CsGy5G008460	Cucurbita moschata (Rifu)	cgybcmoB652
CsGy5G008460	Cucurbita pepo (Zucchini)	cgybcpeB646
CsGy5G008460	Cucurbita pepo (Zucchini)	cgybcpeB647
CsGy5G008460	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G008460	Bottle gourd (USVL1VR-Ls)	cgyblsiB338
CsGy5G008460	Melon (DHL92) v3.6.1	cgybmedB311
CsGy5G008460	Watermelon (Charleston Gray)	cgybwcgB369
CsGy5G008460	Watermelon (97103) v1	cgybwmB359
CsGy5G008460	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G008460	Silver-seed gourd	carcgybB0670
CsGy5G008460	Silver-seed gourd	carcgybB0898