CsGy5G008230 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G008230
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	NADH-Ubiquinone/plastoquinone (complex I) protein
Location	Chr5 : 6077948 .. 6080298 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCAAACGAAAGTCAAAAGACCTCTAGCTCATAGTTCAATTGGACATGTAGGTTATATTCGTACAGGTTTCTCATGTGGAACCATAGAAGGAATTCAATCACTACTAATTGGTATCTTTATTTATGTATTAATGACGATAGATGCATTCGCCATAGTTTTAGCATTACGGCAAACCCGTGTCAAATATATAGCGGATTTGAGCATTTGTTTTTAAAAAAAAAATCTTTGGAATGTCCTTATTAAAAAAACTAGAAAACGAAAATGTAGCGTATAATTCTTTTTTGGGTCAAAACAAACTTTAAATTGGTGATAGATCGACGTATTCTATTTTTTTCATTTTAAAGTCGGATTTGAACTCCCACCCCTATAATTATTAAATAACAATAGTTCTACTCTTTTTTATTTTGTTAGATTGAAAATATATACTTGATGCATACCATAACCATGTTAACTTAATTTTGAAGCATTTATTAAAAAAAGAAAAAAGAGAGAGATAAGAATAATAATAACTTAAAATTGAAGCAATTTAACTTTTTTCTTTCTAAAGTTTTTAAATACAAAGAAAGTAATAACTATTTTATAAATTATTTATATAAAATAGTAAGATTTACCTAATTTTGAATTAAGAACTAAAAATACATTTATTTTATAGATGATTATATTTTGAAGTTGTGGTCGTATCCCACTTGGATTTACTAATACCACCACTCTTATGTAATAGTAATTCAAAACAAGAAACTTCTTGGAAATATCCAATTGTTTATGGGTAAAATAATTCCCAAATTTTTTTTTCATTTTTAAATAAATGCCTATACTGTATGGACTTAAATTTGTTTGTATTTACTTTAATTTGTACAATGGGTAGACTATAAAAGAGAAAAAATATGCATTTACTGCCCAATATACTAAGGTTTAGCTATTTTAAAGCATTGTTGATGATCATCTTCTTCAACTCTCCAAACACTCTATATATTCTCATTTTTGTAAACTTCTCACATGTTATGTTTTATTGAGAGTTTACATCATTCAAATTTGCTTATAAACATTACAACTATTATACAATGTTTATTCAAATTAAAATATAATAGAGAATATAAATTCATGCAATTATCGAACGTTTCAAATTTCAATCAAGTAATAATCATTAGTTCACGGTTTTAATTGAAACAACTTTCTAACATTTATTAATTAATTGTATTATCGTCTATCTAATCGTTATTAAAAATAAACTTTCTTTTTTTTTCAAAATTATATCCATTCAACATTTTATATATATTTCTTTACCATTTTTCTATAAATTCATTGTATTAATTAAATGGATTCTATTTGCATTACCATAAAGGTTGCTTTCTATATGGGTGGTTTTTATTTTATTTTTTAAAAGTTTATTTTAGTTTGATGTGATGTTACACCTATATGTCAATTTTATTTTTTTCATTATAGCCGATGTTCTATGATTTGCTTCAATATTTCAATTTGAAAATAGAAATAAAGGTCGGGAGACGAGGAGGGAACGTGAGAGAGTTGATTTTGGAGAAAACAAATAACAAAATTAGTTTTTGGGTTTATTTGATTCAAATGTGTTGATTTTGTTTGTTTATTTGTGTAAAAGATTCATAGAATAAATTAGTAAGATTGATTGGTTATTTATCAATTTAGTTAAAGTGATGGATATCTATACGTTAGTCATTCAAATATTGAAGCCAAATCATCATTCCGTTAAAAATTTAAGAGAATCTTAATGCAAAAAATCGAAGTAAGTGTTCTTTTTTTTTTAAAGTTCGACCAAAATAGAACAAGATCGGAAGTAAATTGTATATTTGTGAAAATAAACCCAACTTAATTATTTCAAATAAATAAATAAAAGTAGCATAGTATTTGATTGACATAAATTGGTAGCATTAGATGTTAAATATCTATATCTCTGCTAATAAGTTTGCTACTAATTATTTATGAAAACACCACTTTTGTTTCAAAAAACTTTGTTACATTGCTAATGATTTTGGTTTTTTTAATTTTTTTTAAACAATTTAATCGTTATATCTTCATATTTGTAATAATTTAGTTCATACACTATAAAAAGTACCAATTTATTTATGCTACTTTATAATTTGTATTAATTCAGTCTTCGTCGTGAAAAATGCTATTAAGATTTAATGGAATTTTTTATCTATATAGATTGTAGACCTAATTAATGTCGAGTTTATTTGTAAGTGATAAAGATTATGTTTGTATAATCAAAATTAGTAAATTAAGTTCGATAAAAAGTTTCATAAATAAATTGATACAATTTTAGCTCCATCGTATGTGTTTGAAAGTGATTCTAACTCGTATTTTGAGTGTTCA

mRNA sequence

ATGGCCCAAACGAAAGTCAAAAGACCTCTAGCTCATAGTTCAATTGGACATGTAGGTTATATTCGTACAGTAATTCAAAACAAGAAACTTCTTGGAAATATCCAATTGTTTATGGCTCCATCGTATGTGTTTGAAAGTGATTCTAACTCGTATTTTGAGTGTTCA

Coding sequence (CDS)

ATGGCCCAAACGAAAGTCAAAAGACCTCTAGCTCATAGTTCAATTGGACATGTAGGTTATATTCGTACAGTAATTCAAAACAAGAAACTTCTTGGAAATATCCAATTGTTTATGGCTCCATCGTATGTGTTTGAAAGTGATTCTAACTCGTATTTTGAGTGTTCA

Protein sequence

MAQTKVKRPLAHSSIGHVGYIRTVIQNKKLLGNIQLFMAPSYVFESDSNSYFECS

Homology

[Close]

BLAST of CsGy5G008230 vs. NCBI nr
Match: YP_002608350.1 (NADH dehydrogenase subunit 2 [Vitis vinifera] >CAQ77578.1 NADH dehydrogenase subunit 2 (mitochondrion) [Vitis vinifera])

HSP 1 Score: 51.6 bits (122), Expect = 9.8e-04
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 1   MAQTKVKRPLAHSSIGHVGYIRTVIQNKKLLGNIQLFMAPSYVFES 47
           MAQTKVKRPLAHSSIGHVGYIRT +    + G IQ  +   +++ S
Sbjct: 299 MAQTKVKRPLAHSSIGHVGYIRTGLSCGTIEG-IQSLLIGIFIYAS 343

[Close]

BLAST of CsGy5G008230 vs. NCBI nr
Match: CBI23503.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 51.6 bits (122), Expect = 9.8e-04
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 1   MAQTKVKRPLAHSSIGHVGYIRTVIQNKKLLGNIQLFMAPSYVFES 47
           MAQTKVKRPLAHSSIGHVGYIRT +    + G IQ  +   +++ S
Sbjct: 325 MAQTKVKRPLAHSSIGHVGYIRTGLSCGTIEG-IQSLLIGIFIYAS 369

[Close]

BLAST of CsGy5G008230 vs. NCBI nr
Match: AAW63671.1 (NADH dehydrogenase subunit 2, partial (mitochondrion) [Piper betle])

HSP 1 Score: 51.6 bits (122), Expect = 9.8e-04
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 1   MAQTKVKRPLAHSSIGHVGYIRTVIQNKKLLGNIQLFMAPSYVFES 47
           MAQTKVKRPLAHSSIGHVGYIRT +    + G IQ  +   +++ S
Sbjct: 63  MAQTKVKRPLAHSSIGHVGYIRTGLSCGTIEG-IQSLLIGIFIYAS 107

[Close]

BLAST of CsGy5G008230 vs. NCBI nr
Match: CAN64512.1 (hypothetical protein VITISV_004351 [Vitis vinifera])

HSP 1 Score: 51.6 bits (122), Expect = 9.8e-04
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 1   MAQTKVKRPLAHSSIGHVGYIRTVIQNKKLLGNIQLFMAPSYVFES 47
           MAQTKVKRPLAHSSIGHVGYIRT +    + G IQ  +   +++ S
Sbjct: 63  MAQTKVKRPLAHSSIGHVGYIRTGLSCGTIEG-IQSLLIGIFIYAS 107

[Close]

BLAST of CsGy5G008230 vs. NCBI nr
Match: XP_010647127.2 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104878429 [Vitis vinifera])

HSP 1 Score: 51.6 bits (122), Expect = 9.8e-04
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 1   MAQTKVKRPLAHSSIGHVGYIRTVIQNKKLLGNIQLFMAPSYVFES 47
           MAQTKVKRPLAHSSIGHVGYIRT +    + G IQ  +   +++ S
Sbjct: 83  MAQTKVKRPLAHSSIGHVGYIRTGLSCGTIEG-IQSLLIGIFIYAS 127

[Close]

BLAST of CsGy5G008230 vs. TAIR10
Match: AT2G07689.1 (NADH-Ubiquinone/plastoquinone (complex I) protein)

HSP 1 Score: 50.4 bits (119), Expect = 4.0e-07
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1  MAQTKVKRPLAHSSIGHVGYIRT 24
          MAQTKVKRPLAHSSIGHVGYIRT
Sbjct: 63 MAQTKVKRPLAHSSIGHVGYIRT 85

[Close]

BLAST of CsGy5G008230 vs. TAIR10
Match: ATMG00285.1 (NADH dehydrogenase 2A)

HSP 1 Score: 50.4 bits (119), Expect = 4.0e-07
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1   MAQTKVKRPLAHSSIGHVGYIRT 24
           MAQTKVKRPLAHSSIGHVGYIRT
Sbjct: 310 MAQTKVKRPLAHSSIGHVGYIRT 332

[Close]

BLAST of CsGy5G008230 vs. TAIR10
Match: ATMG01320.1 (NADH dehydrogenase 2B)

HSP 1 Score: 50.4 bits (119), Expect = 4.0e-07
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1   MAQTKVKRPLAHSSIGHVGYIRT 24
           MAQTKVKRPLAHSSIGHVGYIRT
Sbjct: 310 MAQTKVKRPLAHSSIGHVGYIRT 332

[Close]

BLAST of CsGy5G008230 vs. TrEMBL
Match: tr|I1VWJ7|I1VWJ7_SPIPO (NADH dehydrogenase subunit 2 OS=Spirodela polyrhiza OX=29656 GN=nad2 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.5e-04
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 1   MAQTKVKRPLAHSSIGHVGYIRTVIQNKKLLGNIQLFMAPSYVFES 47
           MAQTKVKRPLAHSSIGHVGYIRT +    + G IQ  +   +++ S
Sbjct: 284 MAQTKVKRPLAHSSIGHVGYIRTGLSCGTIEG-IQSLLIGIFIYAS 328

[Close]

BLAST of CsGy5G008230 vs. TrEMBL
Match: tr|A0A2G5DBZ0|A0A2G5DBZ0_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02300080v1 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.5e-04
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 1   MAQTKVKRPLAHSSIGHVGYIRTVIQNKKLLGNIQLFMAPSYVFES 47
           MAQTKVKRPLAHSSIGHVGYIRT +    + G IQ  +   +++ S
Sbjct: 193 MAQTKVKRPLAHSSIGHVGYIRTGLSCGTIEG-IQSLLIGIFIYAS 237

[Close]

BLAST of CsGy5G008230 vs. TrEMBL
Match: tr|Q5G6U0|Q5G6U0_9MAGN (NADH dehydrogenase subunit 2 (Fragment) OS=Piper betle OX=13217 GN=nad2 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.5e-04
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 1   MAQTKVKRPLAHSSIGHVGYIRTVIQNKKLLGNIQLFMAPSYVFES 47
           MAQTKVKRPLAHSSIGHVGYIRT +    + G IQ  +   +++ S
Sbjct: 63  MAQTKVKRPLAHSSIGHVGYIRTGLSCGTIEG-IQSLLIGIFIYAS 107

[Close]

BLAST of CsGy5G008230 vs. TrEMBL
Match: tr|A5AFS5|A5AFS5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_004351 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.5e-04
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 1   MAQTKVKRPLAHSSIGHVGYIRTVIQNKKLLGNIQLFMAPSYVFES 47
           MAQTKVKRPLAHSSIGHVGYIRT +    + G IQ  +   +++ S
Sbjct: 63  MAQTKVKRPLAHSSIGHVGYIRTGLSCGTIEG-IQSLLIGIFIYAS 107

[Close]

BLAST of CsGy5G008230 vs. TrEMBL
Match: tr|F6H891|F6H891_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0505g00030 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.5e-04
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 1   MAQTKVKRPLAHSSIGHVGYIRTVIQNKKLLGNIQLFMAPSYVFES 47
           MAQTKVKRPLAHSSIGHVGYIRT +    + G IQ  +   +++ S
Sbjct: 325 MAQTKVKRPLAHSSIGHVGYIRTGLSCGTIEG-IQSLLIGIFIYAS 369

The following BLAST results are available for this feature:

BLAST of CsGy5G008230 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_002608350.1	9.8e-04	58.70	NADH dehydrogenase subunit 2 [Vitis vinifera] >CAQ77578.1 NADH dehydrogenase sub...	[more]
CBI23503.3	9.8e-04	58.70	unnamed protein product, partial [Vitis vinifera]	[more]
AAW63671.1	9.8e-04	58.70	NADH dehydrogenase subunit 2, partial (mitochondrion) [Piper betle]	[more]
CAN64512.1	9.8e-04	58.70	hypothetical protein VITISV_004351 [Vitis vinifera]	[more]
XP_010647127.2	9.8e-04	58.70	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104878429 [Vitis vini...	[more]

BLAST of CsGy5G008230 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G07689.1	4.0e-07	100.00	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]
ATMG00285.1	4.0e-07	100.00	NADH dehydrogenase 2A	[more]
ATMG01320.1	4.0e-07	100.00	NADH dehydrogenase 2B	[more]

BLAST of CsGy5G008230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G008230 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|I1VWJ7\|I1VWJ7_SPIPO	6.5e-04	58.70	NADH dehydrogenase subunit 2 OS=Spirodela polyrhiza OX=29656 GN=nad2 PE=3 SV=1	[more]
tr\|A0A2G5DBZ0\|A0A2G5DBZ0_AQUCA	6.5e-04	58.70	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02300080v1 PE=4...	[more]
tr\|Q5G6U0\|Q5G6U0_9MAGN	6.5e-04	58.70	NADH dehydrogenase subunit 2 (Fragment) OS=Piper betle OX=13217 GN=nad2 PE=4 SV=...	[more]
tr\|A5AFS5\|A5AFS5_VITVI	6.5e-04	58.70	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_004351 PE=4 SV=1	[more]
tr\|F6H891\|F6H891_VITVI	6.5e-04	58.70	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0505g00030 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042773	ATP synthesis coupled electron transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G008230.1	CsGy5G008230.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G008230	Cucurbita maxima (Rimu)	cgybcmaB643
CsGy5G008230	Cucurbita maxima (Rimu)	cgybcmaB673
CsGy5G008230	Cucurbita maxima (Rimu)	cgybcmaB674
CsGy5G008230	Cucurbita moschata (Rifu)	cgybcmoB622
CsGy5G008230	Cucurbita moschata (Rifu)	cgybcmoB651
CsGy5G008230	Cucurbita moschata (Rifu)	cgybcmoB652
CsGy5G008230	Cucurbita pepo (Zucchini)	cgybcpeB646
CsGy5G008230	Cucurbita pepo (Zucchini)	cgybcpeB647
CsGy5G008230	Cucurbita pepo (Zucchini)	cgybcpeB690
CsGy5G008230	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G008230	Bottle gourd (USVL1VR-Ls)	cgyblsiB338
CsGy5G008230	Melon (DHL92) v3.5.1	cgybmeB321
CsGy5G008230	Melon (DHL92) v3.6.1	cgybmedB320
CsGy5G008230	Melon (DHL92) v3.6.1	cgybmedB330
CsGy5G008230	Watermelon (Charleston Gray)	cgybwcgB369
CsGy5G008230	Watermelon (97103) v1	cgybwmB359
CsGy5G008230	Watermelon (97103) v1	cgybwmB404
CsGy5G008230	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G008230	Silver-seed gourd	carcgybB0098
CsGy5G008230	Silver-seed gourd	carcgybB0346
CsGy5G008230	Silver-seed gourd	carcgybB0670
CsGy5G008230	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G008230	Cucumber (Chinese Long) v3	cgybcucB244
CsGy5G008230	Watermelon (97103) v2	cgybwmbB353
CsGy5G008230	Watermelon (97103) v2	cgybwmbB375
CsGy5G008230	Wax gourd	cgybwgoB469
CsGy5G008230	Wax gourd	cgybwgoB487
CsGy5G008230	Cucumber (Gy14) v2	cgybcgybB147