CsGy5G007470 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G007470
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1
Location	Chr5 : 5210351 .. 5213731 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAACTAGATTTATTGTAATTTGTTGGTAAAAGGGTGGATTATTATTTTTTATATAGGGACTTAATGTTTTCAATTGTTATCTATATTTATTTACATGTTTATGTGTTGCGGGTCACATTCATATAAACCAATTTACTAAAACATGACGTATATAGTTATAAATGAAGGCAAACTACTATAATCCACTGGTTGCCCCCAAACGTCCTTATATATTTTCTTGACTTTCTCAGTTCACGATTAGATTTGCCTGCGCCGCTGGATACCTTCCCCTGACCAAAGCTCTAGCTTCTTACTCCACGACCACCAACCCATGTTTGTTTCATAAACAGAATGCCAAGTTTCATTAAACTCGATACCCATTACAAAGAGCGCTGAAATTTCAATTTTTCTGATGTTGGTTTTCCATGGAACCTCAACTGGCTTCGATGCCCTCATGCCAAAGGTAACCAATAGCCCTCAAACTTCCTCAATTTCGTTTTAACAATTTCTGAACTCTTTAATCAGACTATTTCCCCCTTTTCCTTATAGATAGATTGCATTTACTATCACAACAAGTTCACATTTACACCTTCCAGCGTCATTTGTGTTCACAACCAAGCTGCACAGCCCCTTACTAGTTTCACCACACCTGAGAGGTGCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCTTTTCTCTTTCTGATTTTCCTTTCAACCCCATGATTTTGATTTTGATTTTGATTTTGAATATAGACGTGTTGTTAAGAAGGTTGGGAAGGAGACACACCATTTATGGAAGAAAAGAGATTCTGCTGGCTCTGGGCAAAAGGCTCTTAATCTTGTTAGAATTGTGAGCTGCGTTTTCTTGAATGTCCCTCCAATATTGAGAGGAAAGAGTGATAATGGCAATTAGTTTGAAATTCAAATGGTTTTCTAATATATTGTAGGTTTCCCAATGTCCTAATGAGAAAGAAGCTGTATATGGAGAATTGAATAAGTGGATAGCTTGGGAGACAGAGTTTCCATTGATTGCAGCTGCTAAAGCTTTAAGAATACTGAGGAAGAGAAGTCAATGGAAGCGTGTCATTCAAGTATGAATAACTTTGGTTTTACTCGTTGTCTTTTTGGCCTTTGGCAAATCGGGGTGTTGATTCTAAAGGATGCAGTTGCTGTGTCTTTAAAAATCATCTTTGTCCGGCTTGTGCTTCTATTTCTTTGCTCGTTTTTTGTTCAGCTAATCTACTAGTGCGTTGGATTTTTGTTGTAATGTTGCATTTATTTGATAATTTTTGTGGCTTGTTAAGTTTTTATATTGAAGTTTGTTCTTAAACCTTGGTCCTTTAGACTTCTAAGTATGAATGAACAAGAGATGACACTTGGGATTTGGTTGATACATTAAATTTTATAATTTCTGTTTAAGATTTAGCTTTATGGGCAGCGAACCTATGGTTGTTGGTTCCAGGTTTGTGAATGATGAAACAACCGTTGTCTCTGTATCTTTGAGATAAATGTTTCTCGAACTAGAACACCAAATTACTTAAGGCGATGTAAACCTCAGTGTTGGACTTGCAAGTAACTTGGACTTTGACGTGTGAAAATATTCTCTCTGATTAACAAGAGAAGTTAGAAGAAGAAAAGTTTTCGTCTTTTGTCAAGGTCAATTGCTATAGTCCTTTCTGTGGTGAAGTTTGGGCTTATGAATATTTATTATGGTTTCTGTAAGCAATATTCAATAGTTTCCTTTTGTCCTTCCACAAGAAAATTGGTAACTTGAGACCTTTTCACCTATTGATATCACTTTCACATGTTGAAGTGCCTTGGCTTGATGAGAGTCGGTTTAATAGCTGCTTATTAATTCTCCCACCTAGTCTTTTCATTAATCAATGCTTCTTATTACTCAGGTGGCTAAGTGGATGTTAAGCAAGGGCCAAGGAGCCACAATGGGAACATACGACACCCTTCTACTGGCATTTGATATGGACAAGAGGGTGGACGAAGCCGAATCCTTATGGAACATGATATTGCATACACATACACGTTCCATCTCTAAGCGAGTATTTTCTAGGATGATCTCTTTGTACGAACATCATGACTTGCAAGATAAGATTATTGAGGTATTGGAAATGGGAAGTCCACATGTATTGCTTAACCTCGCTATTTTTCAATTTTCTCTTCATACGTTATCAAATGATCTCATGCTTCAATTTCTTCTCTCTTGGCACAGATATTTGCAGACATGGAAGAATTGGGTGTAAAACCAGATGAAGATACCGTAAGAAGAGTCTGTCGTGCCTTTCAAAAACTAGGTCAAGAAGATAACCGGAAAATGGTCTATAAAAGATACAGCTGCCAATGGAAATACATACACTTCAAGGGTGAGAGGGTTAGAGTGAGAAGAGATGGATGGGATGAAGATTATCAATGATAGATACATTAACATGAACAAGTTCATAAGGTATCTGTCTACTGATCCCCATTAATTATATGCGCTTAAGCACACTGAAACAGAGATTTGCAGTCTATTTTGTCCCTTTGCTCTGAATATTTAGAACAACTACTAACAGAGAAAATGTAAAGATTGTAAGTTCTGAAGAAAAATAGTGTATATGTTAACCAAAAGACGTCATCTATAACGTTTGCAGTAAGCTGTTCCAGATTTTCTTTTAGGCTTGGATTATTTTCATCGGGACATACAAACAACCCCGTTTTTCTAAGCGGATTAGATTTTGATGTCTTTTGCTTTTGCCTAGCTACTTATGAAAACAGTAGAAAAAGCAAGTAGACTGAAGGTTGCGTAAATTTCACATCAAGCTTTGAAATCTTCATTTTGAAGCATCAAAGACTAGACAATCTTTGAATGAAATCACTGCTTGAATTATGCAAAAAGAAAAGTGGAATGTAGTTTTAAGATAAGATAGATTTGATTTGAACAATCCCAACAAATTGAATAGATGACATGAACAATGAAATCCAAATTCACAAGGGTGGGTAGCAGCAGAAGATGGGTTATAATAAATATACTTCAGATTTTGATGTTTGTTTGAATAATTTGAAAGCAGTATTATTATATAATGAATGTGTAATAGTTTATATATATTATTTGAGATCTATAGTATAAAAATTGAAATCAAATCCAAGATCCAGATTGAAGTGGATGCCATTCTTGTCAAGTAGAAAGGACAGCCCCATAAAACTATTCATAAAATTGTACGGTTGGGATCCACGCATGGTATGGCCATGTCCATGCTCCCAATGTTCTCTTCTTTTCAAAACTTTTCTATTTTTCTTTAAGCTTCTTTTTGTGAGTAGATGTATTTTTTTAATGGATTAAAATACTATTTTAGCCATATTCTTTAAATTTAATCTTTTGTTTGCTTTTTATTGTGATTTTTTT

mRNA sequence

CTAAAACTAGATTTATTGTAATTTGTTGGTAAAAGGGTGGATTATTATTTTTTATATAGGGACTTAATGTTTTCAATTGTTATCTATATTTATTTACATGTTTATGTGTTGCGGGTCACATTCATATAAACCAATTTACTAAAACATGACGTATATAGTTATAAATGAAGGCAAACTACTATAATCCACTGGTTGCCCCCAAACGTCCTTATATATTTTCTTGACTTTCTCAGTTCACGATTAGATTTGCCTGCGCCGCTGGATACCTTCCCCTGACCAAAGCTCTAGCTTCTTACTCCACGACCACCAACCCATGTTTGTTTCATAAACAGAATGCCAAGTTTCATTAAACTCGATACCCATTACAAAGAGCGCTGAAATTTCAATTTTTCTGATGTTGGTTTTCCATGGAACCTCAACTGGCTTCGATGCCCTCATGCCAAAGATAGATTGCATTTACTATCACAACAAGTTCACATTTACACCTTCCAGCGTCATTTGTGTTCACAACCAAGCTGCACAGCCCCTTACTAGTTTCACCACACCTGAGAGACGTGTTGTTAAGAAGGTTGGGAAGGAGACACACCATTTATGGAAGAAAAGAGATTCTGCTGGCTCTGGGCAAAAGGCTCTTAATCTTGTTAGAATTGTTTCCCAATGTCCTAATGAGAAAGAAGCTGTATATGGAGAATTGAATAAGTGGATAGCTTGGGAGACAGAGTTTCCATTGATTGCAGCTGCTAAAGCTTTAAGAATACTGAGGAAGAGAAGTCAATGGAAGCGTGTCATTCAAGTGGCTAAGTGGATGTTAAGCAAGGGCCAAGGAGCCACAATGGGAACATACGACACCCTTCTACTGGCATTTGATATGGACAAGAGGGTGGACGAAGCCGAATCCTTATGGAACATGATATTGCATACACATACACGTTCCATCTCTAAGCGAGTATTTTCTAGGATGATCTCTTTGTACGAACATCATGACTTGCAAGATAAGATTATTGAGATATTTGCAGACATGGAAGAATTGGGTGTAAAACCAGATGAAGATACCGTAAGAAGAGTCTGTCGTGCCTTTCAAAAACTAGGTCAAGAAGATAACCGGAAAATGGTCTATAAAAGATACAGCTGCCAATGGAAATACATACACTTCAAGGGTGAGAGGGTTAGAGTGAGAAGAGATGGATGGGATGAAGATTATCAATGATAGATACATTAACATGAACAAGTTCATAAGGTATCTGTCTACTGATCCCCATTAATTATATGCGCTTAAGCACACTGAAACAGAGATTTGCAGTCTATTTTGTCCCTTTGCTCTGAATATTTAGAACAACTACTAACAGAGAAAATGTAAAGATTGTAAGTTCTGAAGAAAAATAGTGTATATGTTAACCAAAAGACGTCATCTATAACGTTTGCAGTAAGCTGTTCCAGATTTTCTTTTAGGCTTGGATTATTTTCATCGGGACATACAAACAACCCCGTTTTTCTAAGCGGATTAGATTTTGATGTCTTTTGCTTTTGCCTAGCTACTTATGAAAACAGTAGAAAAAGCAAGTAGACTGAAGGTTGCGTAAATTTCACATCAAGCTTTGAAATCTTCATTTTGAAGCATCAAAGACTAGACAATCTTTGAATGAAATCACTGCTTGAATTATGCAAAAAGAAAAGTGGAATGTAGTTTTAAGATAAGATAGATTTGATTTGAACAATCCCAACAAATTGAATAGATGACATGAACAATGAAATCCAAATTCACAAGGGTGGGTAGCAGCAGAAGATGGGTTATAATAAATATACTTCAGATTTTGATGTTTGTTTGAATAATTTGAAAGCAGTATTATTATATAATGAATGTGTAATAGTTTATATATATTATTTGAGATCTATAGTATAAAAATTGAAATCAAATCCAAGATCCAGATTGAAGTGGATGCCATTCTTGTCAAGTAGAAAGGACAGCCCCATAAAACTATTCATAAAATTGTACGGTTGGGATCCACGCATGGTATGGCCATGTCCATGCTCCCAATGTTCTCTTCTTTTCAAAACTTTTCTATTTTTCTTTAAGCTTCTTTTTGTGAGTAGATGTATTTTTTTAATGGATTAAAATACTATTTTAGCCATATTCTTTAAATTTAATCTTTTGTTTGCTTTTTATTGTGATTTTTTT

Coding sequence (CDS)

ATGTTGGTTTTCCATGGAACCTCAACTGGCTTCGATGCCCTCATGCCAAAGATAGATTGCATTTACTATCACAACAAGTTCACATTTACACCTTCCAGCGTCATTTGTGTTCACAACCAAGCTGCACAGCCCCTTACTAGTTTCACCACACCTGAGAGACGTGTTGTTAAGAAGGTTGGGAAGGAGACACACCATTTATGGAAGAAAAGAGATTCTGCTGGCTCTGGGCAAAAGGCTCTTAATCTTGTTAGAATTGTTTCCCAATGTCCTAATGAGAAAGAAGCTGTATATGGAGAATTGAATAAGTGGATAGCTTGGGAGACAGAGTTTCCATTGATTGCAGCTGCTAAAGCTTTAAGAATACTGAGGAAGAGAAGTCAATGGAAGCGTGTCATTCAAGTGGCTAAGTGGATGTTAAGCAAGGGCCAAGGAGCCACAATGGGAACATACGACACCCTTCTACTGGCATTTGATATGGACAAGAGGGTGGACGAAGCCGAATCCTTATGGAACATGATATTGCATACACATACACGTTCCATCTCTAAGCGAGTATTTTCTAGGATGATCTCTTTGTACGAACATCATGACTTGCAAGATAAGATTATTGAGATATTTGCAGACATGGAAGAATTGGGTGTAAAACCAGATGAAGATACCGTAAGAAGAGTCTGTCGTGCCTTTCAAAAACTAGGTCAAGAAGATAACCGGAAAATGGTCTATAAAAGATACAGCTGCCAATGGAAATACATACACTTCAAGGGTGAGAGGGTTAGAGTGAGAAGAGATGGATGGGATGAAGATTATCAATGA

Protein sequence

MLVFHGTSTGFDALMPKIDCIYYHNKFTFTPSSVICVHNQAAQPLTSFTTPERRVVKKVGKETHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRSISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVCRAFQKLGQEDNRKMVYKRYSCQWKYIHFKGERVRVRRDGWDEDYQ

Homology

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BLAST of CsGy5G007470 vs. NCBI nr
Match: XP_011654973.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucumis sativus] >KGN50596.1 hypothetical protein Csa_5G189910 [Cucumis sativus])

HSP 1 Score: 553.1 bits (1424), Expect = 5.1e-154
Identity = 269/270 (99.63%), Postives = 269/270 (99.63%), Query Frame = 0


Query: 1   MLVFHGTSTGFDALMPKIDCIYYHNKFTFTPSSVICVHNQAAQPLTSFTTPERRVVKKVG 60
           MLVFHGTSTGFDALMPKIDCIYYHNKFTFTPSSVICVHNQAAQPLTSFTTPERRVVKKVG
Sbjct: 1   MLVFHGTSTGFDALMPKIDCIYYHNKFTFTPSSVICVHNQAAQPLTSFTTPERRVVKKVG 60

Query: 61  KETHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR 120
           KETHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR
Sbjct: 61  KETHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR 120

Query: 121 ILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS 180
           ILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS
Sbjct: 121 ILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS 180

Query: 181 ISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVCRAFQKLGQEDNRKMV 240
           ISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVC AFQKLGQEDNRKMV
Sbjct: 181 ISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVCCAFQKLGQEDNRKMV 240

Query: 241 YKRYSCQWKYIHFKGERVRVRRDGWDEDYQ 271
           YKRYSCQWKYIHFKGERVRVRRDGWDEDYQ
Sbjct: 241 YKRYSCQWKYIHFKGERVRVRRDGWDEDYQ 270

[Close]

BLAST of CsGy5G007470 vs. NCBI nr
Match: XP_008464896.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 526.2 bits (1354), Expect = 6.7e-146
Identity = 256/270 (94.81%), Postives = 262/270 (97.04%), Query Frame = 0


Query: 1   MLVFHGTSTGFDALMPKIDCIYYHNKFTFTPSSVICVHNQAAQPLTSFTTPERRVVKKVG 60
           MLV HG+STGFDAL+PKIDCIYYHNK  F P+SVICVHNQAAQP TSFTTPERRVVKKVG
Sbjct: 1   MLVLHGSSTGFDALVPKIDCIYYHNKCAFRPASVICVHNQAAQPHTSFTTPERRVVKKVG 60

Query: 61  KETHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR 120
           KE HHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR
Sbjct: 61  KEAHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR 120

Query: 121 ILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS 180
           ILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS
Sbjct: 121 ILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS 180

Query: 181 ISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVCRAFQKLGQEDNRKMV 240
           ISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRR+ RAFQKLGQE+NRKMV
Sbjct: 181 ISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRIGRAFQKLGQEENRKMV 240

Query: 241 YKRYSCQWKYIHFKGERVRVRRDGWDEDYQ 271
           YKRYSCQWKYIHFKGERVRVR+DGWDED Q
Sbjct: 241 YKRYSCQWKYIHFKGERVRVRKDGWDEDDQ 270

[Close]

BLAST of CsGy5G007470 vs. NCBI nr
Match: XP_022139301.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Momordica charantia] >XP_022139302.1 pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 476.9 bits (1226), Expect = 4.7e-131
Identity = 232/268 (86.57%), Postives = 245/268 (91.42%), Query Frame = 0


Query: 1   MLVFHGTSTGFDALMPKIDCIYYHNKFTFTPSSVICVHNQAAQPLTSFTTPERRVVKKVG 60
           M V+ GTS GFD L+PK DCI   NK TF  +S  C HNQA QP TS  T ERR+VKKVG
Sbjct: 1   MSVYRGTSIGFDTLVPKKDCICNFNKLTFRAASFKCSHNQAVQPFTSSPTIERRIVKKVG 60

Query: 61  KETHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR 120
           KE HHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYG LNKWIAWETEFPLIAAAKALR
Sbjct: 61  KEAHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGALNKWIAWETEFPLIAAAKALR 120

Query: 121 ILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS 180
           ILRKRSQWKRVIQVAKWMLSKGQGATMGTYD+LLLAFDMDKRVDEAESLWNMILHTHTRS
Sbjct: 121 ILRKRSQWKRVIQVAKWMLSKGQGATMGTYDSLLLAFDMDKRVDEAESLWNMILHTHTRS 180

Query: 181 ISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVCRAFQKLGQEDNRKMV 240
           ISK++FSRMISLY+HHDLQDK+IEIFADMEELGVKPDEDTVRRV RAFQKLGQE+NRKMV
Sbjct: 181 ISKQLFSRMISLYDHHDLQDKVIEIFADMEELGVKPDEDTVRRVARAFQKLGQEENRKMV 240

Query: 241 YKRYSCQWKYIHFKGERVRVRRDGWDED 269
           +KRY C+WKYIHFKGERVRV+RDGWDED
Sbjct: 241 HKRYGCKWKYIHFKGERVRVKRDGWDED 268

[Close]

BLAST of CsGy5G007470 vs. NCBI nr
Match: XP_023541595.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023541609.1 pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 476.9 bits (1226), Expect = 4.7e-131
Identity = 234/269 (86.99%), Postives = 248/269 (92.19%), Query Frame = 0


Query: 1   MLVFHGTSTGFDALMPKIDCIYYHNKFTFTPSSVICVHNQAAQPLTSFTTPERRVV-KKV 60
           ML + G+STGFDAL+PK  CIY +NK  F  +SV CVH QAAQ LTS TT ERR+V KKV
Sbjct: 1   MLAYRGSSTGFDALVPKKVCIYNYNKLAFRAASVKCVHKQAAQSLTSSTTAERRIVKKKV 60

Query: 61  GKETHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKAL 120
           GKE HHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAA+KAL
Sbjct: 61  GKEAHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAASKAL 120

Query: 121 RILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTR 180
           RILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILH HTR
Sbjct: 121 RILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTR 180

Query: 181 SISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVCRAFQKLGQEDNRKM 240
           SISKR+FSRMISLY+HHDLQDKIIEIFADMEELGV+PDEDTVRRV  AF+KLGQE+N K+
Sbjct: 181 SISKRLFSRMISLYDHHDLQDKIIEIFADMEELGVRPDEDTVRRVAHAFRKLGQEENGKL 240

Query: 241 VYKRYSCQWKYIHFKGERVRVRRDGWDED 269
           VYKRY C+WKYIHFKGERVRVRRDGWDED
Sbjct: 241 VYKRYGCKWKYIHFKGERVRVRRDGWDED 269

[Close]

BLAST of CsGy5G007470 vs. NCBI nr
Match: XP_022942519.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucurbita moschata] >XP_022942520.1 pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucurbita moschata])

HSP 1 Score: 476.5 bits (1225), Expect = 6.1e-131
Identity = 234/269 (86.99%), Postives = 247/269 (91.82%), Query Frame = 0


Query: 1   MLVFHGTSTGFDALMPKIDCIYYHNKFTFTPSSVICVHNQAAQPLTSFTTPERRVV-KKV 60
           ML + G+STGFDAL+PK  CIY +NK  F  +SV CVH QAAQ LT  TT ERR+V KKV
Sbjct: 1   MLAYRGSSTGFDALVPKKVCIYNYNKLAFRAASVKCVHKQAAQSLTGSTTAERRIVKKKV 60

Query: 61  GKETHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKAL 120
           GKE HHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAA+KAL
Sbjct: 61  GKEAHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAASKAL 120

Query: 121 RILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTR 180
           RILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILH HTR
Sbjct: 121 RILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTR 180

Query: 181 SISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVCRAFQKLGQEDNRKM 240
           SISKR+FSRMISLY+HHDLQDKIIEIFADMEELGV+PDEDTVRRV  AF+KLGQE+N KM
Sbjct: 181 SISKRLFSRMISLYDHHDLQDKIIEIFADMEELGVRPDEDTVRRVAHAFRKLGQEENGKM 240

Query: 241 VYKRYSCQWKYIHFKGERVRVRRDGWDED 269
           VYKRY C+WKYIHFKGERVRVRRDGWDED
Sbjct: 241 VYKRYGCKWKYIHFKGERVRVRRDGWDED 269

[Close]

BLAST of CsGy5G007470 vs. TAIR10
Match: AT4G18975.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 339.3 bits (869), Expect = 2.1e-93
Identity = 161/213 (75.59%), Postives = 188/213 (88.26%), Query Frame = 0


Query: 50  TPERRVVKKVGKETHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETE 109
           T   + +KKVGK+ HHLWKK DSAGSGQKALNLVR++S  PNEKEAVYG LNKW+AWE E
Sbjct: 69  TVNSKEIKKVGKKEHHLWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVE 128

Query: 110 FPLIAAAKALRILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESL 169
           FP+IAAAKAL+ILRKRSQW RVIQ+AKWMLSKGQGATMGTYD LLLAFDMD+R DEAESL
Sbjct: 129 FPIIAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESL 188

Query: 170 WNMILHTHTRSISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVCRAFQ 229
           WNMILHTHTRSI +R+F+RMI+LY HHDL DK+IE+FADMEEL V PDED+ RRV RAF+
Sbjct: 189 WNMILHTHTRSIPRRLFARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFR 248

Query: 230 KLGQEDNRKMVYKRYSCQWKYIHFKGERVRVRR 263
           +L QE+NRK++ +RY  ++KYI+F GERVRV+R
Sbjct: 249 ELNQEENRKLILRRYLSEYKYIYFNGERVRVKR 281

[Close]

BLAST of CsGy5G007470 vs. TAIR10
Match: AT4G21190.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 184.9 bits (468), Expect = 6.6e-47
Identity = 92/197 (46.70%), Postives = 125/197 (63.45%), Query Frame = 0


Query: 66  LWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKR 125
           +WK R   G+  KA  ++  +    N KE VYG L+ +IAWE EFPL+   KAL IL   
Sbjct: 45  VWKTRKRIGTISKAAKMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDE 104

Query: 126 SQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRSISKRV 185
            +WK++IQV KWMLSKGQG TMGTY +LL A   D R+DEAE LWN +   H     ++ 
Sbjct: 105 KEWKKIIQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKF 164

Query: 186 FSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVCRAFQKLGQEDNRKMVYKRY- 245
           F++MIS+Y   D+  K+ E+FADMEELGVKP+   V  V + F KL  +D  + + K+Y 
Sbjct: 165 FNKMISIYYKRDMHQKLFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYP 224

Query: 246 SCQWKYIHFKGERVRVR 262
             QW++ + KG RV+V+
Sbjct: 225 PPQWEFRYIKGRRVKVK 241

[Close]

BLAST of CsGy5G007470 vs. TAIR10
Match: AT1G04590.2 (BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18975.4))

HSP 1 Score: 123.2 bits (308), Expect = 2.4e-28
Identity = 65/168 (38.69%), Postives = 101/168 (60.12%), Query Frame = 0


Query: 82  LVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSQWKRVIQVAKWMLSK 141
           LV  +    + KEAVYG L+ W+AWE  FP+ +    +  L K  QW R++QV KW+LSK
Sbjct: 149 LVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLEKEHQWHRMVQVIKWILSK 208

Query: 142 GQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRSISKRVFSRMISLY-EHHDLQD 201
           GQG TMGTY  L+ A DMD+R +EA  +W   +     S+  ++  +M+ +Y  ++ LQ+
Sbjct: 209 GQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPWQLCLQMMRIYFRNNMLQE 268

Query: 202 --KIIEIFADMEELGVK-PDEDTVRRVCRAFQKLGQEDNRKMVYKRYS 246
             K++++F D+E    K PD+  V+ V  A++ LG  D ++ V  +YS
Sbjct: 269 LVKVMKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKERVVTKYS 316

[Close]

BLAST of CsGy5G007470 vs. Swiss-Prot
Match: sp|Q2V3H0|PP322_ARATH (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 339.3 bits (869), Expect = 3.8e-92
Identity = 161/213 (75.59%), Postives = 188/213 (88.26%), Query Frame = 0


Query: 50  TPERRVVKKVGKETHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETE 109
           T   + +KKVGK+ HHLWKK DSAGSGQKALNLVR++S  PNEKEAVYG LNKW+AWE E
Sbjct: 69  TVNSKEIKKVGKKEHHLWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVE 128

Query: 110 FPLIAAAKALRILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESL 169
           FP+IAAAKAL+ILRKRSQW RVIQ+AKWMLSKGQGATMGTYD LLLAFDMD+R DEAESL
Sbjct: 129 FPIIAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESL 188

Query: 170 WNMILHTHTRSISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVCRAFQ 229
           WNMILHTHTRSI +R+F+RMI+LY HHDL DK+IE+FADMEEL V PDED+ RRV RAF+
Sbjct: 189 WNMILHTHTRSIPRRLFARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFR 248

Query: 230 KLGQEDNRKMVYKRYSCQWKYIHFKGERVRVRR 263
           +L QE+NRK++ +RY  ++KYI+F GERVRV+R
Sbjct: 249 ELNQEENRKLILRRYLSEYKYIYFNGERVRVKR 281

[Close]

BLAST of CsGy5G007470 vs. Swiss-Prot
Match: sp|Q8LG95|PP332_ARATH (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX=3702 GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.2e-45
Identity = 92/197 (46.70%), Postives = 125/197 (63.45%), Query Frame = 0


Query: 66  LWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKR 125
           +WK R   G+  KA  ++  +    N KE VYG L+ +IAWE EFPL+   KAL IL   
Sbjct: 45  VWKTRKRIGTISKAAKMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDE 104

Query: 126 SQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRSISKRV 185
            +WK++IQV KWMLSKGQG TMGTY +LL A   D R+DEAE LWN +   H     ++ 
Sbjct: 105 KEWKKIIQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKF 164

Query: 186 FSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVCRAFQKLGQEDNRKMVYKRY- 245
           F++MIS+Y   D+  K+ E+FADMEELGVKP+   V  V + F KL  +D  + + K+Y 
Sbjct: 165 FNKMISIYYKRDMHQKLFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYP 224

Query: 246 SCQWKYIHFKGERVRVR 262
             QW++ + KG RV+V+
Sbjct: 225 PPQWEFRYIKGRRVKVK 241

[Close]

BLAST of CsGy5G007470 vs. TrEMBL
Match: tr|A0A0A0KSA5|A0A0A0KSA5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G189910 PE=4 SV=1)

HSP 1 Score: 553.1 bits (1424), Expect = 3.4e-154
Identity = 269/270 (99.63%), Postives = 269/270 (99.63%), Query Frame = 0


Query: 1   MLVFHGTSTGFDALMPKIDCIYYHNKFTFTPSSVICVHNQAAQPLTSFTTPERRVVKKVG 60
           MLVFHGTSTGFDALMPKIDCIYYHNKFTFTPSSVICVHNQAAQPLTSFTTPERRVVKKVG
Sbjct: 1   MLVFHGTSTGFDALMPKIDCIYYHNKFTFTPSSVICVHNQAAQPLTSFTTPERRVVKKVG 60

Query: 61  KETHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR 120
           KETHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR
Sbjct: 61  KETHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR 120

Query: 121 ILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS 180
           ILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS
Sbjct: 121 ILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS 180

Query: 181 ISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVCRAFQKLGQEDNRKMV 240
           ISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVC AFQKLGQEDNRKMV
Sbjct: 181 ISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVCCAFQKLGQEDNRKMV 240

Query: 241 YKRYSCQWKYIHFKGERVRVRRDGWDEDYQ 271
           YKRYSCQWKYIHFKGERVRVRRDGWDEDYQ
Sbjct: 241 YKRYSCQWKYIHFKGERVRVRRDGWDEDYQ 270

[Close]

BLAST of CsGy5G007470 vs. TrEMBL
Match: tr|A0A1S3CP50|A0A1S3CP50_CUCME (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502655 PE=4 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 4.4e-146
Identity = 256/270 (94.81%), Postives = 262/270 (97.04%), Query Frame = 0


Query: 1   MLVFHGTSTGFDALMPKIDCIYYHNKFTFTPSSVICVHNQAAQPLTSFTTPERRVVKKVG 60
           MLV HG+STGFDAL+PKIDCIYYHNK  F P+SVICVHNQAAQP TSFTTPERRVVKKVG
Sbjct: 1   MLVLHGSSTGFDALVPKIDCIYYHNKCAFRPASVICVHNQAAQPHTSFTTPERRVVKKVG 60

Query: 61  KETHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR 120
           KE HHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR
Sbjct: 61  KEAHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR 120

Query: 121 ILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS 180
           ILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS
Sbjct: 121 ILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS 180

Query: 181 ISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVCRAFQKLGQEDNRKMV 240
           ISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRR+ RAFQKLGQE+NRKMV
Sbjct: 181 ISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRIGRAFQKLGQEENRKMV 240

Query: 241 YKRYSCQWKYIHFKGERVRVRRDGWDEDYQ 271
           YKRYSCQWKYIHFKGERVRVR+DGWDED Q
Sbjct: 241 YKRYSCQWKYIHFKGERVRVRKDGWDEDDQ 270

[Close]

BLAST of CsGy5G007470 vs. TrEMBL
Match: tr|A0A1S3CMN8|A0A1S3CMN8_CUCME (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502655 PE=4 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 1.3e-118
Identity = 214/226 (94.69%), Postives = 219/226 (96.90%), Query Frame = 0


Query: 45  LTSFTTPERRVVKKVGKETHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWI 104
           L S  + +RRVVKKVGKE HHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWI
Sbjct: 5   LGSMPSCQRRVVKKVGKEAHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWI 64

Query: 105 AWETEFPLIAAAKALRILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVD 164
           AWETEFPLIAAAKALRILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVD
Sbjct: 65  AWETEFPLIAAAKALRILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVD 124

Query: 165 EAESLWNMILHTHTRSISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRV 224
           EAESLWNMILHTHTRSISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRR+
Sbjct: 125 EAESLWNMILHTHTRSISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRI 184

Query: 225 CRAFQKLGQEDNRKMVYKRYSCQWKYIHFKGERVRVRRDGWDEDYQ 271
            RAFQKLGQE+NRKMVYKRYSCQWKYIHFKGERVRVR+DGWDED Q
Sbjct: 185 GRAFQKLGQEENRKMVYKRYSCQWKYIHFKGERVRVRKDGWDEDDQ 230

[Close]

BLAST of CsGy5G007470 vs. TrEMBL
Match: tr|A0A251PGZ3|A0A251PGZ3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G071600 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.3e-105
Identity = 189/245 (77.14%), Postives = 214/245 (87.35%), Query Frame = 0


Query: 24  HNKFTFTPSSVICVHNQAAQPLTSFTTPERRVVKKVGKETHHLWKKRDSAGSGQKALNLV 83
           H+  +    +V C   Q+ QPLTS    E++ +KKVG++ HHLW+KRDSAGSGQKALNLV
Sbjct: 49  HHTVSINAFNVKCSFKQSRQPLTSPKAIEKKTIKKVGRKEHHLWQKRDSAGSGQKALNLV 108

Query: 84  RIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSQWKRVIQVAKWMLSKGQ 143
           RIVS  PNEKE VYG L+KW AWETEFPLIAA KALRILRKRSQW RVIQVAKWMLSKGQ
Sbjct: 109 RIVSGLPNEKETVYGALDKWTAWETEFPLIAAVKALRILRKRSQWVRVIQVAKWMLSKGQ 168

Query: 144 GATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRSISKRVFSRMISLYEHHDLQDKII 203
           GATMGTYDTLLLAFDMD+RVDEAESLWNMILHTHTRSISKR+FSRMISLY+HHD Q+KII
Sbjct: 169 GATMGTYDTLLLAFDMDQRVDEAESLWNMILHTHTRSISKRLFSRMISLYDHHDKQNKII 228

Query: 204 EIFADMEELGVKPDEDTVRRVCRAFQKLGQEDNRKMVYKRYSCQWKYIHFKGERVRVRRD 263
           E+FADMEELGVKPDEDTVRRV RAF++LGQE+N+ +V +RY C+WKYIHFKGERV+VR +
Sbjct: 229 EVFADMEELGVKPDEDTVRRVARAFKELGQEENKTLVLRRYQCKWKYIHFKGERVKVRTN 288

Query: 264 GWDED 269
            WDED
Sbjct: 289 AWDED 293

[Close]

BLAST of CsGy5G007470 vs. TrEMBL
Match: tr|A0A2P5D772|A0A2P5D772_9ROSA (Pentatricopeptide repeat OS=Trema orientalis OX=63057 GN=TorRG33x02_259780 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 5.5e-104
Identity = 185/246 (75.20%), Postives = 211/246 (85.77%), Query Frame = 0


Query: 23  YHNKFTFTPSSVICVHNQAAQPLTSFTTPERRVVKKVGKETHHLWKKRDSAGSGQKALNL 82
           +H K     S   C    + +PLTS    E++VVKKVGK  HHLWKKRDSAGSGQKALNL
Sbjct: 20  FHGKLVIRSSYYKCSSKHSGEPLTSSKAIEKKVVKKVGKREHHLWKKRDSAGSGQKALNL 79

Query: 83  VRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSQWKRVIQVAKWMLSKG 142
           +RI+S  PNEKEAVYG LNKWIAWETEFPLIAAAKALRILRKRSQW RVIQVAKWMLSKG
Sbjct: 80  IRIISDLPNEKEAVYGALNKWIAWETEFPLIAAAKALRILRKRSQWTRVIQVAKWMLSKG 139

Query: 143 QGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRSISKRVFSRMISLYEHHDLQDKI 202
           QGATMGTYDTLLLAFDMD+R+DEAESLWNMILHTHTRSISK++FSRMISLY+HH ++DKI
Sbjct: 140 QGATMGTYDTLLLAFDMDRRIDEAESLWNMILHTHTRSISKQLFSRMISLYDHHGMKDKI 199

Query: 203 IEIFADMEELGVKPDEDTVRRVCRAFQKLGQEDNRKMVYKRYSCQWKYIHFKGERVRVRR 262
           IE+FADMEEL ++PDEDTVRRV  AFQ+LGQE+ +K+  ++Y C+WKYIHFKGER+RVRR
Sbjct: 200 IEVFADMEELRIRPDEDTVRRVAYAFQELGQEEKKKLFLRKYQCKWKYIHFKGERIRVRR 259

Query: 263 DGWDED 269
           +   ED
Sbjct: 260 NTAPED 265

The following BLAST results are available for this feature:

BLAST of CsGy5G007470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654973.1	5.1e-154	99.63	PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic ...	[more]
XP_008464896.1	6.7e-146	94.81	PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic ...	[more]
XP_022139301.1	4.7e-131	86.57	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
XP_023541595.1	4.7e-131	86.99	pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucurbita ...	[more]
XP_022942519.1	6.1e-131	86.99	pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucurbita ...	[more]

BLAST of CsGy5G007470 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G18975.1	2.1e-93	75.59	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G21190.1	6.6e-47	46.70	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G04590.2	2.4e-28	38.69	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) super...	[more]

BLAST of CsGy5G007470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2V3H0\|PP322_ARATH	3.8e-92	75.59	Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidop...	[more]
sp\|Q8LG95\|PP332_ARATH	1.2e-45	46.70	Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX...	[more]

BLAST of CsGy5G007470 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KSA5\|A0A0A0KSA5_CUCSA	3.4e-154	99.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G189910 PE=4 SV=1	[more]
tr\|A0A1S3CP50\|A0A1S3CP50_CUCME	4.4e-146	94.81	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
tr\|A0A1S3CMN8\|A0A1S3CMN8_CUCME	1.3e-118	94.69	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 ...	[more]
tr\|A0A251PGZ3\|A0A251PGZ3_PRUPE	1.3e-105	77.14	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G071600 PE=4 SV=1	[more]
tr\|A0A2P5D772\|A0A2P5D772_9ROSA	5.5e-104	75.20	Pentatricopeptide repeat OS=Trema orientalis OX=63057 GN=TorRG33x02_259780 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G007470.1	CsGy5G007470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 98..265 e-value: 1.4E-14 score: 56.4
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 41..267
None	No IPR available	PANTHER	PTHR24015:SF964	SUBFAMILY NOT NAMED	coord: 41..267
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 146..180 score: 6.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 182..216 score: 8.627

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G007470	Cla003971	Watermelon (97103) v1	cgybwmB365
CsGy5G007470	Csa5G189910	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G007470	ClCG07G003760	Watermelon (Charleston Gray)	cgybwcgB369
CsGy5G007470	CSPI05G10100	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G007470	CmoCh04G001810	Cucurbita moschata (Rifu)	cgybcmoB652
CsGy5G007470	MELO3C026567.2	Melon (DHL92) v3.6.1	cgybmedB312
CsGy5G007470	CsaV3_5G008570	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G007470	Cla97C07G132130	Watermelon (97103) v2	cgybwmbB375

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G007470	Cucumber (Chinese Long) v3	cgybcucB223
CsGy5G007470	Cucumber (Chinese Long) v3	cgybcucB240
CsGy5G007470	Watermelon (97103) v2	cgybwmbB346
CsGy5G007470	Wax gourd	cgybwgoB467
CsGy5G007470	Wax gourd	cgybwgoB485
CsGy5G007470	Wax gourd	cgybwgoB487
CsGy5G007470	Cucurbita maxima (Rimu)	cgybcmaB689
CsGy5G007470	Cucumber (Gy14) v2	cgybcgybB092
CsGy5G007470	Cucumber (Gy14) v2	cgybcgybB143
CsGy5G007470	Cucurbita maxima (Rimu)	cgybcmaB645
CsGy5G007470	Cucurbita maxima (Rimu)	cgybcmaB673
CsGy5G007470	Cucurbita maxima (Rimu)	cgybcmaB674
CsGy5G007470	Cucurbita maxima (Rimu)	cgybcmaB697
CsGy5G007470	Cucurbita moschata (Rifu)	cgybcmoB569
CsGy5G007470	Cucurbita moschata (Rifu)	cgybcmoB581
CsGy5G007470	Cucurbita moschata (Rifu)	cgybcmoB623
CsGy5G007470	Cucurbita moschata (Rifu)	cgybcmoB651
CsGy5G007470	Cucurbita moschata (Rifu)	cgybcmoB670
CsGy5G007470	Cucurbita moschata (Rifu)	cgybcmoB677
CsGy5G007470	Cucurbita moschata (Rifu)	cgybcmoB680
CsGy5G007470	Cucurbita pepo (Zucchini)	cgybcpeB591
CsGy5G007470	Cucurbita pepo (Zucchini)	cgybcpeB614
CsGy5G007470	Cucurbita pepo (Zucchini)	cgybcpeB646
CsGy5G007470	Cucurbita pepo (Zucchini)	cgybcpeB647
CsGy5G007470	Cucurbita pepo (Zucchini)	cgybcpeB661
CsGy5G007470	Cucurbita pepo (Zucchini)	cgybcpeB675
CsGy5G007470	Cucurbita pepo (Zucchini)	cgybcpeB701
CsGy5G007470	Cucumber (Chinese Long) v2	cgybcuB212
CsGy5G007470	Cucumber (Chinese Long) v2	cgybcuB235
CsGy5G007470	Bottle gourd (USVL1VR-Ls)	cgyblsiB326
CsGy5G007470	Bottle gourd (USVL1VR-Ls)	cgyblsiB330
CsGy5G007470	Bottle gourd (USVL1VR-Ls)	cgyblsiB331
CsGy5G007470	Melon (DHL92) v3.5.1	cgybmeB342
CsGy5G007470	Melon (DHL92) v3.5.1	cgybmeB310
CsGy5G007470	Melon (DHL92) v3.6.1	cgybmedB341
CsGy5G007470	Watermelon (Charleston Gray)	cgybwcgB320
CsGy5G007470	Watermelon (97103) v1	cgybwmB344
CsGy5G007470	Watermelon (97103) v1	cgybwmB407
CsGy5G007470	Wild cucumber (PI 183967)	cgybcpiB214
CsGy5G007470	Wild cucumber (PI 183967)	cgybcpiB241
CsGy5G007470	Silver-seed gourd	carcgybB0098
CsGy5G007470	Silver-seed gourd	carcgybB0279
CsGy5G007470	Silver-seed gourd	carcgybB0452
CsGy5G007470	Silver-seed gourd	carcgybB0670
CsGy5G007470	Silver-seed gourd	carcgybB0986