CsGy5G006060 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G006060
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Pentatricopeptide repeat-containing protein At5g61990, mitochondrial
Location	Chr5 : 4032906 .. 4039821 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAATGCTTTGTGCTTGATTCGGCAAATAGCTGCAAATTCCTCCCCTCGAAGAATTCTCTCTACTTTCCCTTTCCAAACTACCAGTTTTCCCCAAATATGGAATAATGTTTCTATCCATTTTATGTTTTTCTCGACCAATAACCCATTTGATCATTACGATGACACTGTTCGCGAATTTTCCATGATTCTGAAGCGTAAAGATTGGCAGATCCTTTTAAACAACGAGGACAATGTGAGGAAGCTAAACCCAGAAATTGTTTGCTCTGTTCTACAGAAGAGCGAAATCGATGACTCTGTGCGGCTTCAGAATTTCTTCTATTGGTCGAGTTCAAAAATGAGTACGCCACAATACTTGCATTCGTATTCGATTCTTGCAATTCGTCTTTGTAATTCTGGGCTAATACACCAAGCCGATAACATGCTTGAGAAATTGCTCCAGACCCGTAAGCCACCTTTGGAGATTTTGGATTCATTGGTTAGGTGCTATAGAGAATTTGGTGGGTCTAATTTGACTGTTTTTGATATTTTTATCGATAAATTTAGGGTCTTGGGGTTTTTGAATGAGGCCTCTAGTGTTTTTATAGCTTCCATTAGTGAAGGGTTCTTTCCCACCTTGATATGCTGTAATAATTTGATGAGGGATTTGTTGAAGGCTAACATGATGGGGTTGTTTTGGAAGGTGTATGGAAGTATGGTGGAGGCTAAGATAGTCCCAGATGTTTATACATACACTAATGTGATCAAGGCACATTGCAAAGTTGGTGATGTTATCAAGGGAAAGATGGTTCTTTCTGAGATGGAGAAGGAATGTAAACCTAATTTGTTCACCTACAATGCATTTATTGGAGGTTTATGTCAGACTGGAGCTGTTGACGAAGCTTTAGAGGTAAAGAAATTGATGATGGAGAAGGGTTTGGGTCCGGATGGCCATACTTATACTTTACTCGTTGATGGGTTTTGCAAACAGAAGAGATCAAAAGAAGCAAAATTGATATTTGAAAGTATGCCTAGTTCAGGTTTAAATCCTAATCGTTTTACCTACACTGCTTTGATTGATGGATTCATAAAAGAAGGGAATATTGAAGAGGCATTGAGGATCAAAGATGAGATGATTACTCGTGGACTTAAGTTGAACGTTGTAACTTATAATGCAATGATTGGGGGCATTGCTAAGGCTGGTGAGATGGCGAAAGCAATGTCTCTTTTCAATGAGATGTTGATGGCTGGCATAGAACCAGATACCTGGACCTACAACTTACTGATTGATGGATATTTGAAGTCTCATGATATGGCTAAAGCTTGTGAGCTACTAGCTGAGATGAAAGCAAGGAAATTGACGCCATCACCGTTCACTTATAGTGTGCTTATTAGTGGCCTTTGTCATTCCAGTGATTTACAAAAGGCTAACGAAGTTTTGGACCAGATGATCAGAAACGGGGTGAAACCGAATGTTTTTATGTATGGTACCTTGATTAAGGCATATGTCCAAGAAAGTAGATATGAAATGGCAATAGAATTACTAAAAATAATGATTGCAAATGGGGTCCTGCCTGATTTGTTTTGCTACAATTGTCTTATAATTGGTCTTTGTAGAGCCAAAAAGGTGGAAGAAGCAAAAATGTTGCTTGTTGATATGGGTGAGAAAGGAATAAAACCTAATGCACATACTTATGGGGCTTTTATTAATTTATATAGTAAATCAGGAGAAATCCAAGTTGCAGAGAGGTATTTCAAAGACATGCTATCTTCTGGTATAGTGCCTAACAACGTAATCTATACTATTTTAATTAAGGGGCATTGCGATGTTGGAAATACGGTAGAAGCTTTGTCAACTTTCAAATGCATGCTTGAGAAAGGGTTGATTCCTGACATCCGAGCATATAGTGCAATCATTCACAGTCTCTCGAAGAATGGGAAAACCAAAGAAGCCATGGGGGTTTTCTTAAAATTCCTTAAGACGGGTGTGGTGCCCGATGTTTTTTTATACAACTCCCTTATATCTGGTTTCTGCAAGGAAGGTGATATTGAGAAGGCATCCCAACTTTATGACGAGATGCTTCATAATGGAATTAATCCCAACATTGTCGTATACAATACCTTAATTAATGGATTGTGCAAGCTAGGTGAGGTAACAAAAGCTAGGGAACTTTTTGATGAAATTGAAGAAAAAGATTTGGTTCCCGATGTTGTGACTTATTCAACAATCATAGATGGATATTGCAAATCTGGAAACTTAACCGAGGCATTTAAACTGTTTGATGAGATGATATCAAAAGGAATTTCTCCTGATGGTTACATCTACTGTATCCTCATTGACGGTTGCGGCAAGGAGGGAAATTTGGAGAAGGCACTTTCATTATTTCACGAAGCCCAGCAGAAAAGTGTTGGTTCCCTTTCTGCTTTCAACTCTTTGATTGATAGTTTCTGCAAACATGGAAAAGTGATTGAAGCGAGGGAGTTGTTCGACGATATGGTAGATAAAAAATTGACACCGAATATTGTGACATACACGATTCTGATCGATGCATACGGCAAAGCAGAAATGATGGAGGAGGCAGAGCAGCTTTTTCTAGATATGGAAACGAGAAATATCATACCAAATACTCTTACATATACTTCACTTTTACTCAGTTATAACCAGATAGGAAATAGATTTAAGATGATTTCATTGTTTAAGGATATGGAAGCTAGGGGGATTGCGTGTGATGCAATAGCATATGGTGTGATGGCTAGTGCCTACTGCAAGGAAGGAAAATCTCTTGAAGCCTTGAAGCTGCTCAACAAAAGCTTGGTCGAGGGTATAAAGTTGGAGGATGATGTGTTCGACGCATTAATATTTCACCTCTGCAAGGAAAAACAAATATCTACAGTACTGGAGTTGCTTAGTGAAATGGGAAAAGAAGAACTTTCTCTTAGCTCTAAGACATGTAATACTCTTTTACTTGGTTTTTACAAGTCAGGTAATGAAGACGAAGCTTCAAAGGTTCTTGGCGTTATGCAAAGATTGGGATGGGTTCCAACCTCTTTAAGCTTGACTGATTCGATCAGTACTGGTAGAGATGATATGAAATCCGATATTTCCCAAGTATTGTAATGCAAGCAGGGTCCAAGTAGTCCATTACTGGAAACTGTTCTGTTTGTTTGATATGTTCTGATTTATTCCTCGTTTGAGCACTAAAGATGATGATGGCGTAAGCAGAATGCTAGTGAAGTTCAACTCTCACTTGGCTACTAGCTGATACACGGGGAAACAACGAGCTTCATTTTTGCAACATCAAGTATAAATTTTGTCGTTTTGTAACGAGATATGGAATCTATTGCTGAAGTTCAGTCACGGAACTGGGAATCTTTAGACCACTATTGGAAGAGGGAAAATCTGCAGGCCTTCTGCAATAGGTCCTCTTTTATTAGCTCTCTAATTTTGCTGAATTGAAACTTATGCATTCATTTGAAGTCCATATTATCCAGTTTGGTTTGTAGAGCATGCAACAAGCTGACAATGCTGCTACTTTAGTCCTGCGTAGTTCAGCGAAAATGGCGAGCAGGCATTGCTTGAACACTACTTCGGATATGTGCAACAGTTCATGGAAAATGTTATGCAGATGCTTGCTCTTTATCAATGTCTTTCCATGATCTCTGACTGGTTTATATCATCTTTCATATATTTTTTTTCCTCCCTTAATCTAATAGTCTTCCATAGATTTGCAATTTGGGCTGTTTTCTTGACTACAGACACTAATGGACTAGCTAATTTAGTATAGTTTTAGGGGCTACTGACAAAGTAACAATACTATTAGCTAACTCAGCAGTAAATTTGCCTTCCAACCCCAAGCTCCAATTCTTATATTATTCTTATTGAATTATAAAGCCTCCACCAACGAAACTTTTGTATCTACCACTTGAGATTTGAACATTTTATATATCAACTAGTGATTAAAATGGTTTTTGAGGATTCAAATATGTATATATATATATTCCTATAATGGTTCAAGGCTTGTATGATATGAATCCGTTTTGTGTGTGTATACAGAAATAATTGTTTTATGTTCATGAATTCCTGAACTTCTCTAATGGCTCCTTGATTTTATGGTATAAAATGTTTTGTTGTAAATAAATTGACATGATCTTTATTCTTGAAGAAATTTTTTAAATAGAAATCGATTTTTTCGAAGAGAGAATAAAAAGATTTGTTTTATTTATAATCCATGTCAACTTTTGACAGTAGTACGTGGGGTGGACGGTCGAACAATAGATTTCAAAGTTGATAGAAAAGAATTGTGAGCTATTTGTTAGAAAATTAAATCACTCCAAATGAGCTTATTTTTACTAATAAAATTAAAAGTAAATGATATTTTCCTTTGGAATATTTCTCAATCGTTAACTGAACATTTTTAAATACATGCAAAATCGTAAAAATCGATCCCTTAAAGTTGTATGATTCTTAACCATTTCTACAATTATACAAATTTGAGAGTCCATTTTTATTACTTGTATAAACACAAGAGCTTAATTTTTTACAATTGAAAATTTGATGGTATAGTTTCAACTACATTACCTACTTTTGAGGTGATTTTTGCACCTTAACTTGAATATTATAATTATATTCTCTTTTCAATTGTTTGTTTGATAAGATGCATAAAGATAGGTATCACTCAAAATACACATCTAAATATTATTATTGTTGTGGCGATGGTTGTGACATCTAGGCTCAACTACCTTACACGAAAAATAACATAAATATTAAGGACCATACAACCTATATATTTAAGCATAAAAAAGATATTAATGGAACTTACTAACAAATATAATTATAATAAAAAAACTAAGAGAAAATTAAAAATTAAATCCACTTACATTGTAAGAAGGTCAAGTTTGCACACTTTCATTTTACTATAGAGTCTAGAGAAAGAGAAGGTCTAGAATGATGGAGAGGAGTTCGTTAGTTTAACCAAAAATGACTATCTGATACAAATAAAACTACGCATCATCATTTAACTCTTATTGTAATTTAATATAGCAGACAAGTCATTTTTGGCTACCAAACGACACTCTTCACGTCATACTAAACATCTCTTCCTTCCATTTCCACGCCCCTTAGTAGCAAATCCATCCGCGCACATTTAGAACTTTTTCAAGATAGGGGGAAGGAAAAAGAAGTTATACAACATAACATTGAAAGGGAAGAATGAAGACCTAAACCAAAAATAGTAATAATATTAGACAAAGATGATCCAACCCCTTCTCTCATATTATAAATTTTCTTCTTCTCATCTTCCAATCAAATAGAGTTGAAGGGGTTTTGATAACTCACCATATATATATATATATATATAGTTTCCTTGGGCAAAATTTATCCTTTGATTTTGCATTTTTTTTATGCTGAAATTAAAAGAATATATTCTAATTTGTGGATTGCATGGTTGACTACTCAAAGGTATTATCTACAACTTTTATTCTTTTAAAGTATTCTCATTTTGTTGAGTCAATTGTAGTAATCAACAATTGTGTGGAGTTAATTTCTGAACAACTTTGCAACACTCAAAAAACAATGAACCAAAATTAGGGTCTTATAAGAAAGAAAGAGATAACCATAGCATGAAAAGAATGAGTCTTGATTTAAGAAGGTAAGTGAAAAGATAGACCTGTCGCTCTCCGTTGGTAACATCTCGATAAAATTGGAATGATACGAAGAAGATTAGAATATGACAAGCACACAAACTAAAAAAAAAAATGACTTCCTACTCCATGGAAACCATATATACATTTTGGATCCTAATTAAGTTAGTTGTAGGGCCTGTGTAGTATTGTTGATGATCTCTAAAAATTAAATTGGAATATATTCAATTAGGGTTTCATGCATGGTTGGCTCAAACATGCATGAAGAATTTTGCTTATTAAAATTATTCCCATTTGTAAGTCAACTGATCTAATATGTAGTTCACATCAGAAAATTCAGCTTTTCAATTCAAATTTTCTTTCAGTTCCAAATATACTTTTAAAGTAAAGAACCCCTTGTGAAAAATGTTGTAAATTGTAATGTTTACAAGGACACGTACTTCATAGTCTACCCATTTGGAAGAGTTATTTTTAAATGTTAATACTCTGTGATGATTTTAGGATGTTGTACCTATGTTTATGTAGTTCACGTACACTAATATTACACATAGTAAAAGAATTCAATTTTTTTTTATAAGAGATCAAAGTTTTACTCGTTCTAAATTATTATTTTTGGTTATGTTAGACATGAAGAGTGCAAGAAAATGATGTCGTAGTTTAATTTATATGTATGGTGCAATGCAACTAATCATACAAACATTTCTATATTAAAAAAAAAGAACAATTTTGACGTTAAAAAGATGTAAAAAAAAACTAAAAATTGCCTCACCTCTGTCTTTTCATAATTTTTTTTTTATGTTTTATCTTTGAAATCACCCATTTTTTGATGTTTTTTTCTTCTAAAAACAGTCATGTATTAGATCATAAACGTTAAGAGAGAGTTTCTTTTTCTAGTAGTCTATATATACAATTAATTAGTGTGGATGGATATGAAAATTATAAATTTTACGATAATAACTTTCTAATTTATTTGAAAATGTAACTTTTTTTAATCAAGCTTCCTATTAGTATTGAGAATAGAGTGACATGGAACGTAACTACGACAAAAATTTTGTCATTACTTGACAGTTCTAAAATGTGACATATCATTAGTTTTGATGCTTTTAAAAACGTCAATTGTGATCCATTGTAAGATATAATAAGATAACTTAACCAAAGAAAAATAGTCACGAAGCTTCACCGTAATTATATGTCAAGGGTATTTTCCCTCGACATTTAACCAAGTATAGTTCGTAGTAACTCTTCTTGTATTTGACAAGTGTATTGTTATCTTAGGACTTCAAGTTTTGACATAA

mRNA sequence

ATGGCAAATGCTTTGTGCTTGATTCGGCAAATAGCTGCAAATTCCTCCCCTCGAAGAATTCTCTCTACTTTCCCTTTCCAAACTACCAGTTTTCCCCAAATATGGAATAATGTTTCTATCCATTTTATGTTTTTCTCGACCAATAACCCATTTGATCATTACGATGACACTGTTCGCGAATTTTCCATGATTCTGAAGCGTAAAGATTGGCAGATCCTTTTAAACAACGAGGACAATGTGAGGAAGCTAAACCCAGAAATTGTTTGCTCTGTTCTACAGAAGAGCGAAATCGATGACTCTGTGCGGCTTCAGAATTTCTTCTATTGGTCGAGTTCAAAAATGAGTACGCCACAATACTTGCATTCGTATTCGATTCTTGCAATTCGTCTTTGTAATTCTGGGCTAATACACCAAGCCGATAACATGCTTGAGAAATTGCTCCAGACCCGTAAGCCACCTTTGGAGATTTTGGATTCATTGGTTAGGTGCTATAGAGAATTTGGTGGGTCTAATTTGACTGTTTTTGATATTTTTATCGATAAATTTAGGGTCTTGGGGTTTTTGAATGAGGCCTCTAGTGTTTTTATAGCTTCCATTAGTGAAGGGTTCTTTCCCACCTTGATATGCTGTAATAATTTGATGAGGGATTTGTTGAAGGCTAACATGATGGGGTTGTTTTGGAAGGTGTATGGAAGTATGGTGGAGGCTAAGATAGTCCCAGATGTTTATACATACACTAATGTGATCAAGGCACATTGCAAAGTTGGTGATGTTATCAAGGGAAAGATGGTTCTTTCTGAGATGGAGAAGGAATGTAAACCTAATTTGTTCACCTACAATGCATTTATTGGAGGTTTATGTCAGACTGGAGCTGTTGACGAAGCTTTAGAGGTAAAGAAATTGATGATGGAGAAGGGTTTGGGTCCGGATGGCCATACTTATACTTTACTCGTTGATGGGTTTTGCAAACAGAAGAGATCAAAAGAAGCAAAATTGATATTTGAAAGTATGCCTAGTTCAGGTTTAAATCCTAATCGTTTTACCTACACTGCTTTGATTGATGGATTCATAAAAGAAGGGAATATTGAAGAGGCATTGAGGATCAAAGATGAGATGATTACTCGTGGACTTAAGTTGAACGTTGTAACTTATAATGCAATGATTGGGGGCATTGCTAAGGCTGGTGAGATGGCGAAAGCAATGTCTCTTTTCAATGAGATGTTGATGGCTGGCATAGAACCAGATACCTGGACCTACAACTTACTGATTGATGGATATTTGAAGTCTCATGATATGGCTAAAGCTTGTGAGCTACTAGCTGAGATGAAAGCAAGGAAATTGACGCCATCACCGTTCACTTATAGTGTGCTTATTAGTGGCCTTTGTCATTCCAGTGATTTACAAAAGGCTAACGAAGTTTTGGACCAGATGATCAGAAACGGGGTGAAACCGAATGTTTTTATGTATGGTACCTTGATTAAGGCATATGTCCAAGAAAGTAGATATGAAATGGCAATAGAATTACTAAAAATAATGATTGCAAATGGGGTCCTGCCTGATTTGTTTTGCTACAATTGTCTTATAATTGGTCTTTGTAGAGCCAAAAAGGTGGAAGAAGCAAAAATGTTGCTTGTTGATATGGGTGAGAAAGGAATAAAACCTAATGCACATACTTATGGGGCTTTTATTAATTTATATAGTAAATCAGGAGAAATCCAAGTTGCAGAGAGGTATTTCAAAGACATGCTATCTTCTGGTATAGTGCCTAACAACGTAATCTATACTATTTTAATTAAGGGGCATTGCGATGTTGGAAATACGGTAGAAGCTTTGTCAACTTTCAAATGCATGCTTGAGAAAGGGTTGATTCCTGACATCCGAGCATATAGTGCAATCATTCACAGTCTCTCGAAGAATGGGAAAACCAAAGAAGCCATGGGGGTTTTCTTAAAATTCCTTAAGACGGGTGTGGTGCCCGATGTTTTTTTATACAACTCCCTTATATCTGGTTTCTGCAAGGAAGGTGATATTGAGAAGGCATCCCAACTTTATGACGAGATGCTTCATAATGGAATTAATCCCAACATTGTCGTATACAATACCTTAATTAATGGATTGTGCAAGCTAGGTGAGGTAACAAAAGCTAGGGAACTTTTTGATGAAATTGAAGAAAAAGATTTGGTTCCCGATGTTGTGACTTATTCAACAATCATAGATGGATATTGCAAATCTGGAAACTTAACCGAGGCATTTAAACTGTTTGATGAGATGATATCAAAAGGAATTTCTCCTGATGGTTACATCTACTGTATCCTCATTGACGGTTGCGGCAAGGAGGGAAATTTGGAGAAGGCACTTTCATTATTTCACGAAGCCCAGCAGAAAAGTGTTGGTTCCCTTTCTGCTTTCAACTCTTTGATTGATAGTTTCTGCAAACATGGAAAAGTGATTGAAGCGAGGGAGTTGTTCGACGATATGGTAGATAAAAAATTGACACCGAATATTGTGACATACACGATTCTGATCGATGCATACGGCAAAGCAGAAATGATGGAGGAGGCAGAGCAGCTTTTTCTAGATATGGAAACGAGAAATATCATACCAAATACTCTTACATATACTTCACTTTTACTCAGTTATAACCAGATAGGAAATAGATTTAAGATGATTTCATTGTTTAAGGATATGGAAGCTAGGGGGATTGCGTGTGATGCAATAGCATATGGTGTGATGGCTAGTGCCTACTGCAAGGAAGGAAAATCTCTTGAAGCCTTGAAGCTGCTCAACAAAAGCTTGGTCGAGGGTATAAAGTTGGAGGATGATGTGTTCGACGCATTAATATTTCACCTCTGCAAGGAAAAACAAATATCTACAGTACTGGAGTTGCTTAGTGAAATGGGAAAAGAAGAACTTTCTCTTAGCTCTAAGACATGTAATACTCTTTTACTTGGTTTTTACAAGTCAGGTAATGAAGACGAAGCTTCAAAGGTTCTTGGCGTTATGCAAAGATTGGGATGGGTTCCAACCTCTTTAAGCTTGACTGATTCGATCAGTACTGGTAGAGATGATATGAAATCCGATATTTCCCAAGTATTTTCAACTCTCACTTGGCTACTAGCTGATACACGGGGAAACAACGAGCTTCATTTTTGCAACATCAACGAAAATGGCGAGCAGGCATTGCTTGAACACTACTTCGGATATGTGCAACAGTTCATGGAAAATGTTATGCAGATGCTTGCTCTTTATCAATGTCTTTCCATGATCTCTGACTGTTCACATCAGAAAATTCAGCTTTTCAATTCAAATTTTCTTTCAGTTCCAAATATACTTTTAAAGATGTTGTACCTATGTTTATGTAGTTCACTTCTAAAATGTGACATATCATTAGTTTTGATGCTTTTAAAAACGTCAATTGTGATCCATTGACTTCAAGTTTTGACATAA

Coding sequence (CDS)

ATGGCAAATGCTTTGTGCTTGATTCGGCAAATAGCTGCAAATTCCTCCCCTCGAAGAATTCTCTCTACTTTCCCTTTCCAAACTACCAGTTTTCCCCAAATATGGAATAATGTTTCTATCCATTTTATGTTTTTCTCGACCAATAACCCATTTGATCATTACGATGACACTGTTCGCGAATTTTCCATGATTCTGAAGCGTAAAGATTGGCAGATCCTTTTAAACAACGAGGACAATGTGAGGAAGCTAAACCCAGAAATTGTTTGCTCTGTTCTACAGAAGAGCGAAATCGATGACTCTGTGCGGCTTCAGAATTTCTTCTATTGGTCGAGTTCAAAAATGAGTACGCCACAATACTTGCATTCGTATTCGATTCTTGCAATTCGTCTTTGTAATTCTGGGCTAATACACCAAGCCGATAACATGCTTGAGAAATTGCTCCAGACCCGTAAGCCACCTTTGGAGATTTTGGATTCATTGGTTAGGTGCTATAGAGAATTTGGTGGGTCTAATTTGACTGTTTTTGATATTTTTATCGATAAATTTAGGGTCTTGGGGTTTTTGAATGAGGCCTCTAGTGTTTTTATAGCTTCCATTAGTGAAGGGTTCTTTCCCACCTTGATATGCTGTAATAATTTGATGAGGGATTTGTTGAAGGCTAACATGATGGGGTTGTTTTGGAAGGTGTATGGAAGTATGGTGGAGGCTAAGATAGTCCCAGATGTTTATACATACACTAATGTGATCAAGGCACATTGCAAAGTTGGTGATGTTATCAAGGGAAAGATGGTTCTTTCTGAGATGGAGAAGGAATGTAAACCTAATTTGTTCACCTACAATGCATTTATTGGAGGTTTATGTCAGACTGGAGCTGTTGACGAAGCTTTAGAGGTAAAGAAATTGATGATGGAGAAGGGTTTGGGTCCGGATGGCCATACTTATACTTTACTCGTTGATGGGTTTTGCAAACAGAAGAGATCAAAAGAAGCAAAATTGATATTTGAAAGTATGCCTAGTTCAGGTTTAAATCCTAATCGTTTTACCTACACTGCTTTGATTGATGGATTCATAAAAGAAGGGAATATTGAAGAGGCATTGAGGATCAAAGATGAGATGATTACTCGTGGACTTAAGTTGAACGTTGTAACTTATAATGCAATGATTGGGGGCATTGCTAAGGCTGGTGAGATGGCGAAAGCAATGTCTCTTTTCAATGAGATGTTGATGGCTGGCATAGAACCAGATACCTGGACCTACAACTTACTGATTGATGGATATTTGAAGTCTCATGATATGGCTAAAGCTTGTGAGCTACTAGCTGAGATGAAAGCAAGGAAATTGACGCCATCACCGTTCACTTATAGTGTGCTTATTAGTGGCCTTTGTCATTCCAGTGATTTACAAAAGGCTAACGAAGTTTTGGACCAGATGATCAGAAACGGGGTGAAACCGAATGTTTTTATGTATGGTACCTTGATTAAGGCATATGTCCAAGAAAGTAGATATGAAATGGCAATAGAATTACTAAAAATAATGATTGCAAATGGGGTCCTGCCTGATTTGTTTTGCTACAATTGTCTTATAATTGGTCTTTGTAGAGCCAAAAAGGTGGAAGAAGCAAAAATGTTGCTTGTTGATATGGGTGAGAAAGGAATAAAACCTAATGCACATACTTATGGGGCTTTTATTAATTTATATAGTAAATCAGGAGAAATCCAAGTTGCAGAGAGGTATTTCAAAGACATGCTATCTTCTGGTATAGTGCCTAACAACGTAATCTATACTATTTTAATTAAGGGGCATTGCGATGTTGGAAATACGGTAGAAGCTTTGTCAACTTTCAAATGCATGCTTGAGAAAGGGTTGATTCCTGACATCCGAGCATATAGTGCAATCATTCACAGTCTCTCGAAGAATGGGAAAACCAAAGAAGCCATGGGGGTTTTCTTAAAATTCCTTAAGACGGGTGTGGTGCCCGATGTTTTTTTATACAACTCCCTTATATCTGGTTTCTGCAAGGAAGGTGATATTGAGAAGGCATCCCAACTTTATGACGAGATGCTTCATAATGGAATTAATCCCAACATTGTCGTATACAATACCTTAATTAATGGATTGTGCAAGCTAGGTGAGGTAACAAAAGCTAGGGAACTTTTTGATGAAATTGAAGAAAAAGATTTGGTTCCCGATGTTGTGACTTATTCAACAATCATAGATGGATATTGCAAATCTGGAAACTTAACCGAGGCATTTAAACTGTTTGATGAGATGATATCAAAAGGAATTTCTCCTGATGGTTACATCTACTGTATCCTCATTGACGGTTGCGGCAAGGAGGGAAATTTGGAGAAGGCACTTTCATTATTTCACGAAGCCCAGCAGAAAAGTGTTGGTTCCCTTTCTGCTTTCAACTCTTTGATTGATAGTTTCTGCAAACATGGAAAAGTGATTGAAGCGAGGGAGTTGTTCGACGATATGGTAGATAAAAAATTGACACCGAATATTGTGACATACACGATTCTGATCGATGCATACGGCAAAGCAGAAATGATGGAGGAGGCAGAGCAGCTTTTTCTAGATATGGAAACGAGAAATATCATACCAAATACTCTTACATATACTTCACTTTTACTCAGTTATAACCAGATAGGAAATAGATTTAAGATGATTTCATTGTTTAAGGATATGGAAGCTAGGGGGATTGCGTGTGATGCAATAGCATATGGTGTGATGGCTAGTGCCTACTGCAAGGAAGGAAAATCTCTTGAAGCCTTGAAGCTGCTCAACAAAAGCTTGGTCGAGGGTATAAAGTTGGAGGATGATGTGTTCGACGCATTAATATTTCACCTCTGCAAGGAAAAACAAATATCTACAGTACTGGAGTTGCTTAGTGAAATGGGAAAAGAAGAACTTTCTCTTAGCTCTAAGACATGTAATACTCTTTTACTTGGTTTTTACAAGTCAGGTAATGAAGACGAAGCTTCAAAGGTTCTTGGCGTTATGCAAAGATTGGGATGGGTTCCAACCTCTTTAAGCTTGACTGATTCGATCAGTACTGGTAGAGATGATATGAAATCCGATATTTCCCAAGTATTTTCAACTCTCACTTGGCTACTAGCTGATACACGGGGAAACAACGAGCTTCATTTTTGCAACATCAACGAAAATGGCGAGCAGGCATTGCTTGAACACTACTTCGGATATGTGCAACAGTTCATGGAAAATGTTATGCAGATGCTTGCTCTTTATCAATGTCTTTCCATGATCTCTGACTGTTCACATCAGAAAATTCAGCTTTTCAATTCAAATTTTCTTTCAGTTCCAAATATACTTTTAAAGATGTTGTACCTATGTTTATGTAGTTCACTTCTAAAATGTGACATATCATTAGTTTTGATGCTTTTAAAAACGTCAATTGTGATCCATTGA

Protein sequence

MANALCLIRQIAANSSPRRILSTFPFQTTSFPQIWNNVSIHFMFFSTNNPFDHYDDTVREFSMILKRKDWQILLNNEDNVRKLNPEIVCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVPTSLSLTDSISTGRDDMKSDISQVFSTLTWLLADTRGNNELHFCNINENGEQALLEHYFGYVQQFMENVMQMLALYQCLSMISDCSHQKIQLFNSNFLSVPNILLKMLYLCLCSSLLKCDISLVLMLLKTSIVIH

Homology

[Close]

BLAST of CsGy5G006060 vs. NCBI nr
Match: XP_004143696.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Cucumis sativus] >XP_011654904.1 PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Cucumis sativus] >KGN50452.1 hypothetical protein Csa_5G175760 [Cucumis sativus])

HSP 1 Score: 613.2 bits (1580), Expect = 1.8e-171
Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0


Query: 1   MANALCLIRQIAANSSPRRILSTFPFQTTSFPQIWNNVSIHFMFFSTNNPFDHYDDTVRE 60
           MANALCLIRQIAANSSPRRILSTFPFQTTSFPQIWNNVSIHFMFFSTNNPFDHYDDTVRE
Sbjct: 1   MANALCLIRQIAANSSPRRILSTFPFQTTSFPQIWNNVSIHFMFFSTNNPFDHYDDTVRE 60

Query: 61  FSMILKRKDWQILLNNEDNVRKLNPEIVCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQYL 120
           FSMILKRKDWQILLNNEDNVRKLNPEIVCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQYL
Sbjct: 61  FSMILKRKDWQILLNNEDNVRKLNPEIVCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQYL 120

Query: 121 HSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFID 180
           HSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFID
Sbjct: 121 HSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFID 180

Query: 181 KFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVP 240
           KFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVP
Sbjct: 181 KFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVP 240

Query: 241 DVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKK 300
           DVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKK
Sbjct: 241 DVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKK 300

Query: 301 LM 303
           LM
Sbjct: 301 LM 302

[Close]

BLAST of CsGy5G006060 vs. NCBI nr
Match: XP_008445872.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Cucumis melo] >XP_008445873.1 PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Cucumis melo] >XP_008445874.1 PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Cucumis melo] >XP_008445875.1 PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Cucumis melo])

HSP 1 Score: 487.3 bits (1253), Expect = 1.5e-133
Identity = 240/266 (90.23%), Postives = 251/266 (94.36%), Query Frame = 0


Query: 1   MANALCLIRQIAANSSPRRILSTFPFQTTSFPQIWNNVSIHFMFFSTNNPFDHYDDTVRE 60
           MANALCLIRQ+A NSSPR ILSTFP +TTSFPQIWNN SI  MFFSTNNP DHY+DTVRE
Sbjct: 1   MANALCLIRQMAVNSSPRGILSTFPLRTTSFPQIWNNFSIRLMFFSTNNPSDHYEDTVRE 60

Query: 61  FSMILKRKDWQILLNNEDNVRKLNPEIVCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQYL 120
           FSMILKRKDW ILLNNED++RKLNPE+VCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQ L
Sbjct: 61  FSMILKRKDWVILLNNEDSLRKLNPEVVCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQNL 120

Query: 121 HSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFID 180
            SYSILAIRLCNSGLIHQA NMLEKLL+TRKPPLEILDSLVRCYREFGGSNLTVFDIFID
Sbjct: 121 LSYSILAIRLCNSGLIHQAQNMLEKLLETRKPPLEILDSLVRCYREFGGSNLTVFDIFID 180

Query: 181 KFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVP 240
            FR+ GFLNEASSVFIASISEGFFP+L+CCNNLMRDLLK NMMGLFWKVYGSM+EAKIVP
Sbjct: 181 NFRMFGFLNEASSVFIASISEGFFPSLMCCNNLMRDLLKGNMMGLFWKVYGSMLEAKIVP 240

Query: 241 DVYTYTNVIKAHCKVGDVIKGKMVLS 267
           DVYTYTNVI AHCKVGDVIKGKMVLS
Sbjct: 241 DVYTYTNVINAHCKVGDVIKGKMVLS 266

[Close]

BLAST of CsGy5G006060 vs. NCBI nr
Match: XP_023543741.1 (pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023543750.1 pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 411.8 bits (1057), Expect = 7.8e-111
Identity = 201/267 (75.28%), Postives = 230/267 (86.14%), Query Frame = 0


Query: 1   MANALCLIRQIAANSSPRRILSTFPFQTTSFPQIWNNVSIHFMFFSTNNPFDHYDDTVRE 60
           MANA+CLIRQ+AA S PRR L +FP Q T+FP I N+V   F+FFST +P+DH DDTVRE
Sbjct: 1   MANAMCLIRQMAATSHPRRNLCSFPLQNTNFPLIANDVCTQFIFFSTAHPYDHNDDTVRE 60

Query: 61  FSMILKRKDWQILLNNEDNVRKLNPEIVCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQYL 120
            S ILK  DWQ++L+N+++++KLNPEIV SVLQK+EI+D VRLQ+FFYWSSS+M TPQ L
Sbjct: 61  ISTILKLSDWQVVLDNQNSLKKLNPEIVRSVLQKNEINDPVRLQSFFYWSSSRMGTPQNL 120

Query: 121 HSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFID 180
           HSYSILAIRLCNSG   +ADNM EK+L+TRKPPLEILDSLV+CYRE GGSN+ VFDI ID
Sbjct: 121 HSYSILAIRLCNSGFFPRADNMFEKMLETRKPPLEILDSLVKCYRECGGSNMIVFDILID 180

Query: 181 KFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVP 240
            FR  GFLNEA SVF+ASIS GFFPTLICCN+LMRDLLK  MMGLFWKVYG MVEAKIVP
Sbjct: 181 NFRKFGFLNEACSVFLASISGGFFPTLICCNSLMRDLLKGKMMGLFWKVYGGMVEAKIVP 240

Query: 241 DVYTYTNVIKAHCKVGDVIKGKMVLSE 268
           DVYTYTNVI AHCKVGDV+KG+MVLSE
Sbjct: 241 DVYTYTNVINAHCKVGDVMKGRMVLSE 267

[Close]

BLAST of CsGy5G006060 vs. NCBI nr
Match: XP_022985808.1 (pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Cucurbita maxima] >XP_022985818.1 pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Cucurbita maxima])

HSP 1 Score: 409.8 bits (1052), Expect = 3.0e-110
Identity = 200/267 (74.91%), Postives = 230/267 (86.14%), Query Frame = 0


Query: 1   MANALCLIRQIAANSSPRRILSTFPFQTTSFPQIWNNVSIHFMFFSTNNPFDHYDDTVRE 60
           MANA+CLIRQ+AA S PRR L +FP Q T++P I NNV   FMFFST +P+DH DDTVRE
Sbjct: 1   MANAMCLIRQMAATSHPRRNLCSFPLQNTNYPLIANNVYTQFMFFSTAHPYDHNDDTVRE 60

Query: 61  FSMILKRKDWQILLNNEDNVRKLNPEIVCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQYL 120
            S ILK  DWQ++L+N+++++KLNPEIV SVLQK+EI+D VRLQ+FF+WSSS+M TPQ L
Sbjct: 61  ISTILKLNDWQVVLDNQNSLKKLNPEIVRSVLQKNEINDPVRLQSFFHWSSSRMGTPQNL 120

Query: 121 HSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFID 180
           HSYSILAIRLCNSGL  +ADNM EK+L+TRKPPLEILDSLV+CYRE GGSN  VFDI ID
Sbjct: 121 HSYSILAIRLCNSGLFPRADNMFEKMLETRKPPLEILDSLVKCYRECGGSNSIVFDILID 180

Query: 181 KFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVP 240
            FR  GFLNEA SVF+ASIS GFFP+LICCN+LMRDLLK  MMGLFWKVYG MVEAKIVP
Sbjct: 181 NFRKFGFLNEACSVFLASISGGFFPSLICCNSLMRDLLKGKMMGLFWKVYGGMVEAKIVP 240

Query: 241 DVYTYTNVIKAHCKVGDVIKGKMVLSE 268
           DVYTYTNV+ AHCKVGDV+KG+MVLSE
Sbjct: 241 DVYTYTNVVNAHCKVGDVMKGRMVLSE 267

[Close]

BLAST of CsGy5G006060 vs. NCBI nr
Match: XP_022942694.1 (pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Cucurbita moschata] >XP_022942695.1 pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Cucurbita moschata])

HSP 1 Score: 408.7 bits (1049), Expect = 6.6e-110
Identity = 200/266 (75.19%), Postives = 230/266 (86.47%), Query Frame = 0


Query: 1   MANALCLIRQIAANSSPRRILSTFPFQTTSFPQIWNNVSIHFMFFSTNNPFDHYDDTVRE 60
           MANA+CLIRQ+AA S PRR L +FP Q T+FP I N+V   F+FFST +P+DH DDTVRE
Sbjct: 1   MANAMCLIRQMAAISHPRRNLCSFPVQNTNFPLIANDVCTQFIFFSTAHPYDHNDDTVRE 60

Query: 61  FSMILKRKDWQILLNNEDNVRKLNPEIVCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQYL 120
            S ILK  DWQ++L+N+++++KLNPEIV SVLQK+EI+D VRLQ+FFYWSSS+M TPQ L
Sbjct: 61  ISTILKLSDWQVVLDNQNSLKKLNPEIVRSVLQKNEINDPVRLQSFFYWSSSRMGTPQNL 120

Query: 121 HSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFID 180
           HSYSILAIRLCNSGL  +ADNM EK+L+TRKPPLEILDSLV+CYRE GGSNL VFDI +D
Sbjct: 121 HSYSILAIRLCNSGLFPRADNMFEKMLETRKPPLEILDSLVKCYRECGGSNLIVFDILVD 180

Query: 181 KFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVP 240
            FR  GFLNEA SVF+ASIS GFFP+LICCN+LMRDLLK  MMGLFWKVYG MVEAKIVP
Sbjct: 181 NFRKFGFLNEACSVFLASISGGFFPSLICCNSLMRDLLKGKMMGLFWKVYGGMVEAKIVP 240

Query: 241 DVYTYTNVIKAHCKVGDVIKGKMVLS 267
           DVYTYTNVI AHCKVGDV+KG+MVLS
Sbjct: 241 DVYTYTNVINAHCKVGDVMKGRMVLS 266

[Close]

BLAST of CsGy5G006060 vs. TAIR10
Match: AT5G61990.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 159.5 bits (402), Expect = 1.3e-38
Identity = 99/278 (35.61%), Postives = 149/278 (53.60%), Query Frame = 0


Query: 42  FMFFSTNNPFDHYDDTVREFSMILKRKDWQILLNNEDNVRKLNPEIVCSVLQKSEIDDSV 101
           F  FS N   +   D   E + ILK+++W+  L + +   ++NPE+V SVL+   +DD  
Sbjct: 21  FRSFSVN--VEKLSDASAEIAGILKQENWRDTLVSSNLSIEINPEVVLSVLRSKRVDDPS 80

Query: 102 RLQNFFYWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLV 161
           +L +FF W  S+  T Q L S+S LA+ LCN G   +A +++E++++   P  E+  S+V
Sbjct: 81  KLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKALSVVERMIERNWPVAEVWSSIV 140

Query: 162 RCYREFGG--SNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLK 221
           RC +EF G   +  +F I  D +   G++ EA  VF +S+     P L  C  L+  LL+
Sbjct: 141 RCSQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLR 200

Query: 222 ANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE-------- 281
            N + LFW VY  MVE  +V DV TY  +I AHC+ G+V  GK VL + EKE        
Sbjct: 201 WNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNV 260

Query: 282 -----------CK---PNLFTYNAFIGGLCQTGAVDEA 296
                      CK   P  +TY+  I GLC+   +++A
Sbjct: 261 DGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDA 296

[Close]

BLAST of CsGy5G006060 vs. TAIR10
Match: AT1G66345.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 5.0e-11
Identity = 65/261 (24.90%), Postives = 117/261 (44.83%), Query Frame = 0


Query: 1   MANALCLIRQIAANSSPRRILSTFPFQTTSFPQIWNNVSIH-FMFFSTN---NPFDHYDD 60
           MA+AL   R++      R ++S    Q+T  P++     IH F  FS+    NP      
Sbjct: 1   MASAL---RRLVEQQQWRYLVS----QSTRSPKL-----IHGFFSFSSKTNPNPNKQQQI 60

Query: 61  TVREFSMILKRKD-WQILLNNEDNVRKLNPEIVCSVLQKSEIDDSVRLQNFFYWSSSKMS 120
            +   S  L+  D W+ L     ++   +  I   +L+    + + +  +FF+WSS   +
Sbjct: 61  LIDYISKSLQSNDTWETLSTKFSSIDLSDSLIETILLRFKNPETAKQALSFFHWSSHTRN 120

Query: 121 TPQYLHSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVF 180
               + SY++    L  + L+  A  ++E  L    P  +++DSL+  Y E   S   VF
Sbjct: 121 LRHGIKSYALTIHILVKARLLIDARALIESSLLNSPPDSDLVDSLLDTY-EISSSTPLVF 180

Query: 181 DIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVE 240
           D+ +  +  + +L     VF      GF  ++I  N L+    K+ +  L W++Y   ++
Sbjct: 181 DLLVQCYAKIRYLELGFDVFKRLCDCGFTLSVITLNTLIHYSSKSKIDDLVWRIYECAID 240

Query: 241 AKIVPDVYTYTNVIKAHCKVG 257
            +I P+  T   +I+  CK G
Sbjct: 241 KRIYPNEITIRIMIQVLCKEG 248

[Close]

BLAST of CsGy5G006060 vs. TAIR10
Match: AT2G26790.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-10
Identity = 53/227 (23.35%), Postives = 101/227 (44.49%), Query Frame = 0


Query: 76  NEDNVRKLNPEIVCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQYLHSYSILAIRLCNSGL 135
           N  N+ KL    +  +L  +  D ++ L   F     +      +++Y+ L   L   GL
Sbjct: 47  NHLNLSKLTQHGLQRLLNSTRDDPNLALS--FLRQLKEHGVSPNVNAYATLVRILTTWGL 106

Query: 136 IHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSN------LTVFDIFIDKFRVLGFLN 195
             + D++L +L++  +    ++D L+    E           + V    +  +  LG  +
Sbjct: 107 DIKLDSVLVELIKNEERGFTVMD-LIEVIGEQAEEKKRSFVLIRVSGALVKAYVSLGMFD 166

Query: 196 EASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVI 255
           EA+ V   S        +  CN LM  + +   +G+   ++  + +  +  + YTY  V+
Sbjct: 167 EATDVLFQSKRLDCVVDIKACNFLMNRMTEFGKIGMLMTLFKQLKQLGLCANEYTYAIVV 226

Query: 256 KAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEAL 297
           KA C+ G++ +  M+L E E     ++F Y  FI GLC TG  ++A+
Sbjct: 227 KALCRKGNLEEAAMLLIENE-----SVFGYKTFINGLCVTGETEKAV 265

[Close]

BLAST of CsGy5G006060 vs. TAIR10
Match: AT4G11690.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 3.1e-05
Identity = 40/170 (23.53%), Postives = 78/170 (45.88%), Query Frame = 0


Query: 103 LQNFFYWSSSKMSTPQYLH-SYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLV 162
           L+ F   +S      Q+ H S SIL   L +  L   A ++L +++  +        S +
Sbjct: 21  LKAFSLLNSPNFHEFQHTHESISILLRLLLSGNLFSHAQSLLLQVISGKIHSQFFTSSSL 80

Query: 163 RCY---REFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLL 222
             Y    E   +   ++++ I+ +     LN + S F   +  GF P   C N L+  ++
Sbjct: 81  LHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVV 140

Query: 223 KANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM 269
            ++    +W  +    ++K+V DVY++  +IK  C+ G++ K   +L E+
Sbjct: 141 GSSSFNQWWSFFNEN-KSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIEL 189

[Close]

BLAST of CsGy5G006060 vs. TAIR10
Match: AT2G35130.2 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 47.0 bits (110), Expect = 9.1e-05
Identity = 33/105 (31.43%), Postives = 55/105 (52.38%), Query Frame = 0


Query: 203 FFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGK 262
           F P +IC N L+    +         +Y  ++E++ VP   TY  +IKA+C  G + + +
Sbjct: 173 FQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAE 232

Query: 263 MVLSEMEK-ECKP---NLFTYNAFIGGLC-QTGAVDEALEVKKLM 303
           +VL EM+     P    +  YNA+I GL  + G  +EA++V + M
Sbjct: 233 VVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRM 277

[Close]

BLAST of CsGy5G006060 vs. Swiss-Prot
Match: sp|Q9FIT7|PP442_ARATH (Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g61990 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.3e-37
Identity = 99/278 (35.61%), Postives = 149/278 (53.60%), Query Frame = 0


Query: 42  FMFFSTNNPFDHYDDTVREFSMILKRKDWQILLNNEDNVRKLNPEIVCSVLQKSEIDDSV 101
           F  FS N   +   D   E + ILK+++W+  L + +   ++NPE+V SVL+   +DD  
Sbjct: 21  FRSFSVN--VEKLSDASAEIAGILKQENWRDTLVSSNLSIEINPEVVLSVLRSKRVDDPS 80

Query: 102 RLQNFFYWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLV 161
           +L +FF W  S+  T Q L S+S LA+ LCN G   +A +++E++++   P  E+  S+V
Sbjct: 81  KLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKALSVVERMIERNWPVAEVWSSIV 140

Query: 162 RCYREFGG--SNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLK 221
           RC +EF G   +  +F I  D +   G++ EA  VF +S+     P L  C  L+  LL+
Sbjct: 141 RCSQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLR 200

Query: 222 ANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE-------- 281
            N + LFW VY  MVE  +V DV TY  +I AHC+ G+V  GK VL + EKE        
Sbjct: 201 WNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNV 260

Query: 282 -----------CK---PNLFTYNAFIGGLCQTGAVDEA 296
                      CK   P  +TY+  I GLC+   +++A
Sbjct: 261 DGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDA 296

[Close]

BLAST of CsGy5G006060 vs. Swiss-Prot
Match: sp|Q3ECH5|PP107_ARATH (Pentatricopeptide repeat-containing protein At1g66345, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g66345 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.0e-10
Identity = 65/261 (24.90%), Postives = 117/261 (44.83%), Query Frame = 0


Query: 1   MANALCLIRQIAANSSPRRILSTFPFQTTSFPQIWNNVSIH-FMFFSTN---NPFDHYDD 60
           MA+AL   R++      R ++S    Q+T  P++     IH F  FS+    NP      
Sbjct: 1   MASAL---RRLVEQQQWRYLVS----QSTRSPKL-----IHGFFSFSSKTNPNPNKQQQI 60

Query: 61  TVREFSMILKRKD-WQILLNNEDNVRKLNPEIVCSVLQKSEIDDSVRLQNFFYWSSSKMS 120
            +   S  L+  D W+ L     ++   +  I   +L+    + + +  +FF+WSS   +
Sbjct: 61  LIDYISKSLQSNDTWETLSTKFSSIDLSDSLIETILLRFKNPETAKQALSFFHWSSHTRN 120

Query: 121 TPQYLHSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVF 180
               + SY++    L  + L+  A  ++E  L    P  +++DSL+  Y E   S   VF
Sbjct: 121 LRHGIKSYALTIHILVKARLLIDARALIESSLLNSPPDSDLVDSLLDTY-EISSSTPLVF 180

Query: 181 DIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVE 240
           D+ +  +  + +L     VF      GF  ++I  N L+    K+ +  L W++Y   ++
Sbjct: 181 DLLVQCYAKIRYLELGFDVFKRLCDCGFTLSVITLNTLIHYSSKSKIDDLVWRIYECAID 240

Query: 241 AKIVPDVYTYTNVIKAHCKVG 257
            +I P+  T   +I+  CK G
Sbjct: 241 KRIYPNEITIRIMIQVLCKEG 248

[Close]

BLAST of CsGy5G006060 vs. Swiss-Prot
Match: sp|O81028|PP171_ARATH (Pentatricopeptide repeat-containing protein At2g26790, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g26790 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.5e-09
Identity = 53/227 (23.35%), Postives = 101/227 (44.49%), Query Frame = 0


Query: 76  NEDNVRKLNPEIVCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQYLHSYSILAIRLCNSGL 135
           N  N+ KL    +  +L  +  D ++ L   F     +      +++Y+ L   L   GL
Sbjct: 47  NHLNLSKLTQHGLQRLLNSTRDDPNLALS--FLRQLKEHGVSPNVNAYATLVRILTTWGL 106

Query: 136 IHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSN------LTVFDIFIDKFRVLGFLN 195
             + D++L +L++  +    ++D L+    E           + V    +  +  LG  +
Sbjct: 107 DIKLDSVLVELIKNEERGFTVMD-LIEVIGEQAEEKKRSFVLIRVSGALVKAYVSLGMFD 166

Query: 196 EASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVI 255
           EA+ V   S        +  CN LM  + +   +G+   ++  + +  +  + YTY  V+
Sbjct: 167 EATDVLFQSKRLDCVVDIKACNFLMNRMTEFGKIGMLMTLFKQLKQLGLCANEYTYAIVV 226

Query: 256 KAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEAL 297
           KA C+ G++ +  M+L E E     ++F Y  FI GLC TG  ++A+
Sbjct: 227 KALCRKGNLEEAAMLLIENE-----SVFGYKTFINGLCVTGETEKAV 265

[Close]

BLAST of CsGy5G006060 vs. Swiss-Prot
Match: sp|Q9T0D6|PP306_ARATH (Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana OX=3702 GN=At4g11690 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.7e-04
Identity = 40/170 (23.53%), Postives = 78/170 (45.88%), Query Frame = 0


Query: 103 LQNFFYWSSSKMSTPQYLH-SYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLV 162
           L+ F   +S      Q+ H S SIL   L +  L   A ++L +++  +        S +
Sbjct: 21  LKAFSLLNSPNFHEFQHTHESISILLRLLLSGNLFSHAQSLLLQVISGKIHSQFFTSSSL 80

Query: 163 RCY---REFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLL 222
             Y    E   +   ++++ I+ +     LN + S F   +  GF P   C N L+  ++
Sbjct: 81  LHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVV 140

Query: 223 KANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM 269
            ++    +W  +    ++K+V DVY++  +IK  C+ G++ K   +L E+
Sbjct: 141 GSSSFNQWWSFFNEN-KSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIEL 189

[Close]

BLAST of CsGy5G006060 vs. TrEMBL
Match: tr|A0A0A0KPZ1|A0A0A0KPZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175760 PE=4 SV=1)

HSP 1 Score: 613.2 bits (1580), Expect = 1.2e-171
Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0


Query: 1   MANALCLIRQIAANSSPRRILSTFPFQTTSFPQIWNNVSIHFMFFSTNNPFDHYDDTVRE 60
           MANALCLIRQIAANSSPRRILSTFPFQTTSFPQIWNNVSIHFMFFSTNNPFDHYDDTVRE
Sbjct: 1   MANALCLIRQIAANSSPRRILSTFPFQTTSFPQIWNNVSIHFMFFSTNNPFDHYDDTVRE 60

Query: 61  FSMILKRKDWQILLNNEDNVRKLNPEIVCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQYL 120
           FSMILKRKDWQILLNNEDNVRKLNPEIVCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQYL
Sbjct: 61  FSMILKRKDWQILLNNEDNVRKLNPEIVCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQYL 120

Query: 121 HSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFID 180
           HSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFID
Sbjct: 121 HSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFID 180

Query: 181 KFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVP 240
           KFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVP
Sbjct: 181 KFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVP 240

Query: 241 DVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKK 300
           DVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKK
Sbjct: 241 DVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKK 300

Query: 301 LM 303
           LM
Sbjct: 301 LM 302

[Close]

BLAST of CsGy5G006060 vs. TrEMBL
Match: tr|A0A1S3BDQ1|A0A1S3BDQ1_CUCME (pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103488761 PE=4 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 9.6e-134
Identity = 240/266 (90.23%), Postives = 251/266 (94.36%), Query Frame = 0


Query: 1   MANALCLIRQIAANSSPRRILSTFPFQTTSFPQIWNNVSIHFMFFSTNNPFDHYDDTVRE 60
           MANALCLIRQ+A NSSPR ILSTFP +TTSFPQIWNN SI  MFFSTNNP DHY+DTVRE
Sbjct: 1   MANALCLIRQMAVNSSPRGILSTFPLRTTSFPQIWNNFSIRLMFFSTNNPSDHYEDTVRE 60

Query: 61  FSMILKRKDWQILLNNEDNVRKLNPEIVCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQYL 120
           FSMILKRKDW ILLNNED++RKLNPE+VCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQ L
Sbjct: 61  FSMILKRKDWVILLNNEDSLRKLNPEVVCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQNL 120

Query: 121 HSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFID 180
            SYSILAIRLCNSGLIHQA NMLEKLL+TRKPPLEILDSLVRCYREFGGSNLTVFDIFID
Sbjct: 121 LSYSILAIRLCNSGLIHQAQNMLEKLLETRKPPLEILDSLVRCYREFGGSNLTVFDIFID 180

Query: 181 KFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVP 240
            FR+ GFLNEASSVFIASISEGFFP+L+CCNNLMRDLLK NMMGLFWKVYGSM+EAKIVP
Sbjct: 181 NFRMFGFLNEASSVFIASISEGFFPSLMCCNNLMRDLLKGNMMGLFWKVYGSMLEAKIVP 240

Query: 241 DVYTYTNVIKAHCKVGDVIKGKMVLS 267
           DVYTYTNVI AHCKVGDVIKGKMVLS
Sbjct: 241 DVYTYTNVINAHCKVGDVIKGKMVLS 266

[Close]

BLAST of CsGy5G006060 vs. TrEMBL
Match: tr|A0A251P8D7|A0A251P8D7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G142900 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.6e-59
Identity = 115/214 (53.74%), Postives = 156/214 (72.90%), Query Frame = 0


Query: 55  DDTVREFSMILKRKDWQILLNNEDNVRKLNPEIVCSVLQKS-EIDDSVRLQNFFYWSSSK 114
           +DTVRE S ILK  DW I LN+ D  +KLNP +V +VLQ++ ++ D  RL +FF W+ + 
Sbjct: 43  EDTVREISTILKHNDWHIALNSSDLPKKLNPHVVRAVLQQNHQVGDPKRLLSFFIWTDTH 102

Query: 115 MSTPQYLHSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLT 174
           +  PQ LHS+SILA+ LCNS L  QA  +LE+++++RKPPLE+++SLV C+REF GS+  
Sbjct: 103 IGVPQNLHSFSILAVALCNSKLFEQAHAVLERIVKSRKPPLEVVNSLVMCFREFDGSDRV 162

Query: 175 VFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSM 234
           VF+I I+ F++ G LNEA+  F+A    G FP L CCN+L++DLLK N + LFWKVY +M
Sbjct: 163 VFEILINAFKMAGHLNEAADAFLAVKKVGIFPGLDCCNSLLKDLLKCNRLELFWKVYDAM 222

Query: 235 VEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSE 268
           +EAK+ PD YTYTNVI AHCK G+  +GK  L E
Sbjct: 223 LEAKVNPDFYTYTNVINAHCKAGNAGQGKRCLHE 256

[Close]

BLAST of CsGy5G006060 vs. TrEMBL
Match: tr|A0A2I4EZP8|A0A2I4EZP8_9ROSI (pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Juglans regia OX=51240 GN=LOC108994206 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.1e-55
Identity = 116/249 (46.59%), Postives = 164/249 (65.86%), Query Frame = 0


Query: 9   RQIAANSSPRRILSTFPFQTTSFPQIWNNVSIHFMFFSTNNPFDHYDDTVREFSMILKRK 68
           R + A + P R+L  +              +  F F ++     + + T+ E S  LK+ 
Sbjct: 17  RNVVAEAQPSRLLFVY--------------AKSFSFCTSQTSKQNEELTIEEISAFLKQS 76

Query: 69  DWQILLNNEDNVRKLNPEIVCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQYLHSYSILAI 128
           +WQ L+ + +  +KLNPE+V SVLQ + + D  RL +FF WS+S M  PQ  +S+SILAI
Sbjct: 77  NWQYLMESSNIPKKLNPEVVRSVLQHNWVSDPKRLLHFFDWSASLMGVPQNQYSFSILAI 136

Query: 129 RLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFIDKFRVLGFL 188
            LCNS L   A+ +LE+++ TRKPPLEILDS+V  + E GGSN+ VF+I ++ +R +G L
Sbjct: 137 ALCNSRLFAHANGVLERMVGTRKPPLEILDSIVTFFVECGGSNVVVFEILVNAYRKVGML 196

Query: 189 NEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNV 248
           NEA+SVF+   ++GF PTL+ CN+L++DL K N M LFWKVY  M+EAK+ PDVYTY+ V
Sbjct: 197 NEAASVFLGIKNDGFLPTLVFCNSLLKDLAKCNRMELFWKVYDRMLEAKMSPDVYTYSTV 251

Query: 249 IKAHCKVGD 258
           I AHCKVG+
Sbjct: 257 INAHCKVGN 251

[Close]

BLAST of CsGy5G006060 vs. TrEMBL
Match: tr|B9RA74|B9RA74_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1503920 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 8.4e-53
Identity = 112/237 (47.26%), Postives = 163/237 (68.78%), Query Frame = 0


Query: 39  SIHFMFFSTNNPFDHYDDTVREFSMILKRKDWQILLNNEDNVRKLNPEIVCSVLQKSEID 98
           SI    FSTN   +  D+TV+E + +LK+K+WQ L+ +     KLNP++V  V++++++ 
Sbjct: 26  SIKSNSFSTNADTNQSDNTVKEITSLLKQKNWQFLIESSPLPNKLNPDVVFLVIKQNQVI 85

Query: 99  DSVRLQNFFYWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILD 158
           D  RL  FF W +S+    Q L ++SIL++ LCNSGL   A N+LE+++ TR P ++ILD
Sbjct: 86  DPKRLHGFFNWVNSRTVFSQNLSTFSILSLILCNSGLFGNAANVLERMIDTRNPHVKILD 145

Query: 159 SLVRCYREFGG----SNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLM 218
           S+++CY+E  G    S++ VF+I ID +R  GFLNEA SVF+ + +  F   L CCN+L 
Sbjct: 146 SIIKCYKEINGSSSSSSVVVFEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLACCNSLS 205

Query: 219 RDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE 272
           +DLLK N + LFWKVY  M+ A IVPDVYTYTN+I A+C+VG V +GK VL +ME++
Sbjct: 206 KDLLKGNRVELFWKVYKGMLGA-IVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEK 261

The following BLAST results are available for this feature:

BLAST of CsGy5G006060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143696.1	1.8e-171	100.00	PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial ...	[more]
XP_008445872.1	1.5e-133	90.23	PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial ...	[more]
XP_023543741.1	7.8e-111	75.28	pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like [Cucur...	[more]
XP_022985808.1	3.0e-110	74.91	pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Cucurbita ...	[more]
XP_022942694.1	6.6e-110	75.19	pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Cucurbita ...	[more]

BLAST of CsGy5G006060 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G61990.1	1.3e-38	35.61	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G66345.1	5.0e-11	24.90	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G26790.1	2.5e-10	23.35	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G11690.1	3.1e-05	23.53	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT2G35130.2	9.1e-05	31.43	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CsGy5G006060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FIT7\|PP442_ARATH	2.3e-37	35.61	Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidop...	[more]
sp\|Q3ECH5\|PP107_ARATH	9.0e-10	24.90	Pentatricopeptide repeat-containing protein At1g66345, mitochondrial OS=Arabidop...	[more]
sp\|O81028\|PP171_ARATH	4.5e-09	23.35	Pentatricopeptide repeat-containing protein At2g26790, mitochondrial OS=Arabidop...	[more]
sp\|Q9T0D6\|PP306_ARATH	5.7e-04	23.53	Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana OX...	[more]

BLAST of CsGy5G006060 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KPZ1\|A0A0A0KPZ1_CUCSA	1.2e-171	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175760 PE=4 SV=1	[more]
tr\|A0A1S3BDQ1\|A0A1S3BDQ1_CUCME	9.6e-134	90.23	pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Cucumis ...	[more]
tr\|A0A251P8D7\|A0A251P8D7_PRUPE	1.6e-59	53.74	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G142900 PE=4 SV=1	[more]
tr\|A0A2I4EZP8\|A0A2I4EZP8_9ROSI	1.1e-55	46.59	pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Juglans ...	[more]
tr\|B9RA74\|B9RA74_RICCO	8.4e-53	47.26	Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis OX=398...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006397	mRNA processing
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G006060.1	CsGy5G006060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 857..915 e-value: 1.1E-4 score: 22.1 coord: 962..1009 e-value: 0.0028 score: 17.6
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 519..564 e-value: 3.7E-12 score: 46.1 coord: 802..846 e-value: 1.8E-15 score: 56.7 coord: 414..463 e-value: 6.6E-17 score: 61.3 coord: 589..638 e-value: 2.3E-9 score: 37.2 coord: 344..384 e-value: 1.2E-10 score: 41.3 coord: 729..777 e-value: 1.4E-18 score: 66.7 coord: 274..323 e-value: 4.6E-14 score: 52.2 coord: 205..254 e-value: 9.4E-9 score: 35.2
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 690..722 e-value: 3.9E-12 score: 45.6 coord: 656..687 e-value: 6.7E-13 score: 48.0
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 418..450 e-value: 6.6E-7 score: 27.1 coord: 872..905 e-value: 0.0023 score: 16.0 coord: 592..626 e-value: 6.9E-6 score: 23.9 coord: 312..345 e-value: 4.3E-7 score: 27.7 coord: 732..765 e-value: 1.0E-12 score: 45.4 coord: 697..731 e-value: 8.1E-11 score: 39.4 coord: 452..486 e-value: 8.2E-9 score: 33.1 coord: 347..381 e-value: 1.2E-8 score: 32.6 coord: 628..661 e-value: 6.4E-6 score: 24.0 coord: 977..1009 e-value: 3.3E-4 score: 18.6 coord: 663..696 e-value: 2.2E-11 score: 41.2 coord: 836..870 e-value: 2.5E-9 score: 34.7 coord: 767..795 e-value: 6.4E-7 score: 27.2 coord: 277..310 e-value: 2.4E-7 score: 28.5 coord: 802..834 e-value: 6.8E-9 score: 33.4 coord: 522..556 e-value: 7.2E-9 score: 33.3 coord: 557..590 e-value: 1.4E-7 score: 29.2 coord: 488..520 e-value: 3.4E-6 score: 24.9 coord: 382..416 e-value: 1.2E-9 score: 35.8 coord: 243..271 e-value: 2.3E-4 score: 19.1
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 487..517 e-value: 5.3E-5 score: 23.1
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 241..271 score: 9.153
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 275..309 score: 12.507
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 171..205 score: 6.697
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 206..240 score: 7.289
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 974..1008 score: 10.337
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 799..833 score: 12.606
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 380..414 score: 13.23
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 450..484 score: 12.748
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 904..938 score: 9.821
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 765..795 score: 9.569
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 625..659 score: 11.049
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 869..903 score: 8.703
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 520..554 score: 12.288
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 415..449 score: 11.794
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 939..973 score: 7.289
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 695..729 score: 13.219
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 345..379 score: 12.244
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 590..624 score: 11.148
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 119..153 score: 6.873
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 555..589 score: 11.762
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 310..344 score: 12.036
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 730..764 score: 15.434
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 485..519 score: 11.224
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 660..694 score: 14.513
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 834..868 score: 12.452
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 515..605 e-value: 3.8E-28 score: 100.0 coord: 710..798 e-value: 2.2E-30 score: 107.4 coord: 606..709 e-value: 6.6E-33 score: 115.6 coord: 171..294 e-value: 3.9E-22 score: 80.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 889..1030 e-value: 1.1E-21 score: 79.6 coord: 799..888 e-value: 1.7E-24 score: 88.7
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 373..445 e-value: 1.2E-21 score: 79.1 coord: 296..372 e-value: 1.0E-21 score: 79.3 coord: 446..514 e-value: 1.6E-16 score: 62.3
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 640..819 coord: 715..905 coord: 116..329 coord: 818..1012 coord: 328..512 coord: 491..661
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 738..932
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 347..544
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 554..761

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G006060	Cla020060	Watermelon (97103) v1	cgybwmB401
CsGy5G006060	Csa3G736820	Cucumber (Chinese Long) v2	cgybcuB218
CsGy5G006060	Csa5G175760	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G006060	MELO3C011746	Melon (DHL92) v3.5.1	cgybmeB310
CsGy5G006060	ClCG02G014020	Watermelon (Charleston Gray)	cgybwcgB347
CsGy5G006060	CSPI05G08680	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G006060	CmoCh04G002870	Cucurbita moschata (Rifu)	cgybcmoB652
CsGy5G006060	Lsi04G007980	Bottle gourd (USVL1VR-Ls)	cgyblsiB331
CsGy5G006060	Cp4.1LG01g04240	Cucurbita pepo (Zucchini)	cgybcpeB647
CsGy5G006060	CsaV3_5G006140	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G006060	Cla97C02G039750	Watermelon (97103) v2	cgybwmbB351
CsGy5G006060	Bhi07G000931	Wax gourd	cgybwgoB480
CsGy5G006060	Carg25680	Silver-seed gourd	carcgybB0841

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsGy5G006060	CsGy3G030690	Cucumber (Gy14) v2	cgybcgybB095

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G006060	Cucurbita maxima (Rimu)	cgybcmaB673
CsGy5G006060	Cucurbita maxima (Rimu)	cgybcmaB674
CsGy5G006060	Cucurbita moschata (Rifu)	cgybcmoB651
CsGy5G006060	Cucurbita pepo (Zucchini)	cgybcpeB646
CsGy5G006060	Melon (DHL92) v3.6.1	cgybmedB310
CsGy5G006060	Silver-seed gourd	carcgybB0832