CsGy5G005900 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G005900
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr5 : 3935770 .. 3941967 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATGAAGCCTACACAACAACAACATACTAAGCCTACGCCTCACCCAATTCCTCCCAACTCCAGCAAAGTTATACATTTTGTTCCACAAAGTATGTAAAGATTTCTGGTTCCTAACTCAATTATTTCTGTTTCTTTTCCTCCCCTTCTTTTTTTTTGGGGGGGTTTTCTTTTGCCAGTTCTTCTTCACTTTATTTTGTTTATTTATTTTTGTTTCATGTTGATATGATTTTCAGGAGAATTTTTTTTTGAAAATGTTGAAGAAAAGATTAATCTGTATCAAAGTGCACTTGAAGGTAATTGGGAAACAGCTGAATATATATTGATGAAGAAAAGAAGTTTGTTAAGTGCATCAATAACGAGAGACAAGGAGAGAGCTCTTCACATTGCTGCTGGAGCTAAGCACACGGATTTTGTGAAAAATCTTGTAAAACAAATGAACAAAGAGGAAATTGCTTTGAAAAATAGACATGGAAACACTGCCTTATGCTTCGCAGCTGCTTCTGGAGTTGTAAAAATTGCTGAGCTTATGGTTAATAAGAACAAAGATCTTCCACTTATTCGTGGTTTTGGCGATGTTACTCCTCTTTTCATGGCAGTTTCTTACAAATGTAAACCCATGGCTTTATATCTCTTGTCGGTCACTCAACTCATTCACTTAACCTCCCAGGAACAGATTGAGCTTCTTATCGCCACCATCTATAGTGACTTCTTTGGTAAATATATCACTTCACACAACTCTCGTTTAATTTGTTTTATCTCCTCACATATACATATATACATACATACATATACATACATATACATACACACATATATATATACATACATACACACATACATATACACACACATATATATTCTAAACGAGACTATCAATTTTACTTATCCAATACAGATATAAGTTTGAACATTTTGGAACTGAATCCAAGCTTGGCTACTATGAACGACGCAAAGAACAACGATGAGACAGCTTTGCATGTCATGGCTAGAAAAACATCAGCAATTGCCAACGGAGATCGATTAAACTTTTGGAAAAGTTGCATCAATTGTTAGTTTATACCTTTTTCAAATTGCACAATGTATCCTTTTAAATTCTTCATTTTGTCGAATATATGTATATACACACAACTTAAGACTAATCACAGAACCTTTGTTTTCATCTGTGACTGCACAGCTTTGAAAGGTGGGATCTCCAATAAAGAAGAAGAAGAGATGAAGACAGCAGCCCGTAAATTAGTTGAATCATTATGGAAACATGGTGTATTTGAATTGCCACATAAGGAGTTGATCAACTTCATTAGACATCCCTCAAGATTACTTCATGATGCTGCCAGTGTAGGAAATGTTGAGTTTTTGGTTTTAGTCATTCGTAGATATCCCGATGTCGTATGGGAAGAAGATGACGACGGTAAAAGTATATTTCATGTAGCAGTTGAGAATCGACTCGAGGATGTGTTCAATCTAATATTTGAGCTTGGTGGACTCAAAGACTTTTCTACAAAATATAGAACTACTGTCAAAGGAAAATATAACCTTCTACATTTGGCTGCTAAACTAGCTGCTCCTAACCATCTCAATAGGGTCTCAGGAGCAGCCCTTCAAATGCAACGTGAATTACTTTGGTTCAAGGTTAGTAACAACCTAGCTACTTAATTGCTGGTTGTTGAGAATCCCTATATTGAAAAAACAACGGTAACTCTTTTTATAAATTAGACATCTACTCTTATTGTCAATTGTTTTCTTACTCTCATGAGAAATTTTTCAAATTGAATAATGAAGGAAGTGGAGAAGATAGTTCTATCATCCCAATTGGAGGCCAAATGTGACGATCCTCTAAAGTTGACACCGCGCGAGTTATTCACGAAAGAACACAAAGATCTTCGAAAAGATGGCGAGGCGTGGATGAGAAACACAGCAAACTCTTGCATGCTTGTTTCAACTTTAATTGCCACAGTTATATTTGCAGCAGCCTTCACAATTCCTGGTGGTGATGATAACGAAGGCACTCCTATATTTCAAAAGAGGTTTTGGTTCACTATATTTGTTATATCAGATGCAGTGGGTTTAATCTCCTCTTCATCTTCTATTTTGGTGTTCTTATCCATCCTAACTTCACGCCATGCCGAAGACGATTTCTTGCACTCATTGCCTTCTCGATTGCTTATTGGACTCACTTCGTTGTTCATCTCCATAGTGTGCATGGTGGTGGCCTTTAGTGCAACCTTTTTTATGCATTACCACAATAATGCAAATATATGGGTTCCTAAAATAGTGGCTACAACAACGATTGTTCCCGTTTGCTGCTTTTGCATGCTTCAGTTTAAACTCTGGGTTGATATATTTCACAACACTTACTTGTCTAAGTTTCTTTTCAGGTCTGATCAACATAAATTAACACTATCGTCCCCTATTAAACGTCTTCTCTCTATACCCATGCTCGAGTCTAATTTACCCTTACCCAACTCTATTATTTGTTCTTCTTCACCTAATGTGCGGTTCACTACAAGAAAAATGGTTTACCACGACGGTTAAAAATTGTCATATTTGAAGTTCTTGACAGTTTTTTGAAGTCATTGTATCGTCCGTGGAGGTATGATTATCAATAACAAATTGAAAGAATTGTCACAATAAATATTGATATCATATATCAAGTATTACTGACAAATAATGAATGCCATTATTTTACTTTTTTGCATATTAACGATTGTTATAAAATGTCACAAATTTATATAATTTGATATGTTTTATCCGTAAATAATAGGCCTAGTATGACTATCATTGAATGTAATAATATCATTACTTTGATAAAAAAAAATTTAAATGAAATGTTTTTTATAAGAAAATACATTAATCGAAGGTTGTTATATCTTGCGGCTTCTGCCATAAGATAAATAAAATTACTAACTATAAAACTCTAAAACATTAAATTATGTTTTGGTTCTCAAATAATTATGTCTGTCCAAGTGTTAAATACTTCATACAGTCTCAGGTTTTATCAAATAATTTTTGAAGCAACAACCTACGAAAGCAAAAAAGAAAAAACAATAACGAAAAGCCTAATCAATACTATCTTCAAATAATCATTGAATAAAGGATACTTCAATTCACAAATAATCATATGAAACATACATTCCTCCATAAGAAGCAACTCTAGCTGTTTCCATCCTCTTTTCCTTTCCATTTTTCAGCAACCCAACAACGTAAGCAAGCAATATAATGGACTATCAGATTGAGAATTACTGAGTAAATCAAAAGCTAAATCATTGAGTAACAGACAATTATCACAATGGGTGTAAAGAGAAAAACTATAATTCATGAAAACCCATCAAAGAAAAATCATTGCTCATACAAACAAAACAATATAATGCAACAGCCACCAACACATAAATTTCGCTACACTATAATCTCCATCTCTTTTCCCCCCATTTACTCAGCAACCAAATAGAGTAAACAGGAATGCTAGCTACACAGAAAGACTTAGAAAACGACTCAAATAGCACCTGGGTAAAAGGCTCGATGTCAATCTCAATTTCCTTCCCGGTCAGCGTCAGTCTCAATGTATATTTAACGTCAATGCAATGCCATCAAGTTGTTGTCCATTATGACAACGAAACAACAAAAACATTCAGAAAGTGACTGTTATACCTTTAGATCTATAAAATTAGCACCAAACTCGTAAGTAGCAGTAGGTATTTTGATGGTTTCAGCAGATTGGTTAGGAATCTCAGTTGGTCCCATAACACACTGATTAGTCATCGATGGTTGATAACGCATAGTTATCAGCTAAGTCAGTTCACTATGTGACCCAGAAGAAACGACAAAAGAAGGGGAAAAAAATCTGAAAAAACTCATTACCAAAGCAAAACTACCTGTGGCTGAGGAAAAACTTTTGATTGAGTCCTTTAGTGAAATCAAATCGCATACCTTCAAATAGTTCCGGCTTAAGGACACTACCAAAGCAAATCAAATATATAACAAAATGCATCAATTTAAGAAACCAAAACTCACATTTCCACTAAAAACAACGAAGCCCACCAATTCTACAAGCATTTAACACCTCAAGAAATATAATTTTTTAAAAAACAATAGAAACGAAAATAAAGCTATCTTAGACGTCCTCACAGGAGCAATGAACAAATCATGAACGTAGAGCAAAAGGGGGTGGTTAAGAAAAGGGTTTAGGGTTTAGACTTGTATGAGGTGTATTAGACTTGTGTTAGTAACAATGACATTTGTGACGTTTTACTTCTTCATGTGTGGGCTGGACTTCATTTTTGTCATTTTGCAAAAATATAAAATGTGTGTTTCATATACTTAATTATTATAACTTATTTTGTCATTTTTACAAGTGATCCATTAATTAAATTACTAATCACATGTGTATTTGTAACATGAGTAAGTTGATGATGATAATGACCAAGAGAATCAAACTGAGAAGAGAAACAAAAATCAAATATATAAGCTTGAAAAGTGGGAAGAAATTGAATCCAACCTAATAGTTTGATAATGTGTTATTTACACATTATTGATATAATCCAACCTCAACTGTACCTAAAAGATTATTCATATAATCCAATATAATCCAACATCATAGTTATCAATAACTATCTTCTATCAATAGAATATTGGTTTATGGAAGTTAACGATACTAAAATAAAGTTGACAAGAAGTACATTTTTCAACGTATTTGAATAGACAATATTCGAAGACCTTGATCATTGATTATTAATAATTTAAACACGCAACTTTCTATCACTAGTAGATAGTTATAGAGAACTAATAGATAATCGTAGAAACTATCGCTCTTACTACTACTAATGATAGAAGGATATATTACTTTTATCACTTTATACACGAAAAATAGAAGATTATCACCAATTATTAGTGGTAATAATAATAAAGAATACTTAAAGTTATCAATGATAGCCTATACATTACTATCTATCCGTTTCTTTTTTTAATATTTTTTTCTTGTTGTATAGAATTTGATAAGAATTCAAATGGTTACAATTCGTATTTGAGAAAACAATCACATTAAATTAAATAAATAATAAGTTGTCTAATGATTTGGTTTTTAACTTCTTCTTTACAGATATAAGTTTGAAAATATTGGAAGATGATCCAACTTTGGCTACTGCGTATGACACAAAAAATAACAACGAGACAGCATTGCATGTCATGGCTAGAAAACCATCCGCATTCCACAGTGGAGATCGACTAAGCTTTTGGAAAAGTTGCATCACTTGTCAGTTCTCTTTTAACTGCAATTTTACACTTCAAAATTATTTAGGCTAAGTTGTTGCAAATATATTGAAATTCCACAGAATTTAAACTTAGCTCTAATACTCATGTATTAGTGATAGACCATATATTGCTACAATATTAATCTATTATGATTTTGTTATATTTGAAATTATTCTAGAAAACAAGATTTTTAATCTTTGTTGTGCATGCACAACAATGAAAAGGATATCAGAAAAAGAAGAGATGAAGGTACTAGCCTATGTTGTATACGAGTTGCCACAAAAGGAAATGCTGAGCTTCATAAGACATCCTCCAAGATTGCTTCACGACGCTGCCAGTGAAGGAAATGTGGAGTTTTTGTGTTTTACTGATTCGTAGATATCCAGATATTGTATGGGAAGAAGACGATGATGGTAAAAGTATATTTCACGTAGCGGTTGAGCATCGACTTGAGGACGTGTCCAATCTAATATATGAGATTGGTGGCCTTAAGGACTTTTCTGCAAAATATAGAATAACTGTCAAAGGAAAATATAATATTCTACATTTGGCTGCAAAACTAGCTGCTCCTAACCACCTCAATAGGGTCTCAGGAGCAGTCCTTCAAATGCAACGTGAATTACTTTGGTACAAGGTAACTTACTTAATTATCAAGATGAATATACCATCCAAAACTTTTGGGACAATTAATAATTAAGTAAGTATGGGTTATTGGATTCACTGCCACAATAATGCAAATGTATGGGTTCCTAAAATAGTGGCTACCACAACAATTGATCCAGTTTGCTGCTTTTGCGTGCTGCAGTTTAAACTATGGGTGGATATATATCACAACACCTATTTGTCTAAATATCTTTTTAGGCCTCGTCAACGTAAATTGTCATCATCTCCTTTCACTTTACCCTTACCTAAGGCTATTGCTTGTTCTGAAGCTAATTCTGCAAGTTAA

mRNA sequence

ATGAAAATGAAGCCTACACAACAACAACATACTAAGCCTACGCCTCACCCAATTCCTCCCAACTCCAGCAAAGTTATACATTTTGTTCCACAAACAACCCAACAACGAATGCTAGCTACACAGAAAGACTTAGAAAACGACTCAAATAGCACCTGGGTAAAAGGCTCGATGTCAATCTCAATTTCCTTCCCGGTCAGCGTCAGTCTCAATATCTATAAAATTAGCACCAAACTCGTAAGTAGCAGTAGGTATTTTGATGGTTTCAGCAGATTGGTTAGGAATCTCAGTTGGTCCCATAACACACTGATTAGTCATCGATGGTTGATAACGCATAGTTATCAGCTAAAATTTGATAAGAATTCAAATGGTTACAATTCATATAAGTTTGAAAATATTGGAAGATGATCCAACTTTGGCTACTGCGTATGACACAAAAAATAACAACGAGACAGCATTGCATGTCATGGCTAGAAAACCATCCGCATTCCACAGTGGAGATCGACTAAGCTTTTGGAAAAGTTGCATCACTTGTCAGTTCTCTTTTAACTGCAATTTTACACTTCAAAATTATTTAGGCTAAGTTGTTGCAAATATATTGAAATTCCACAGAATTTAAACTTAGCTCTAATACTCATGCCTCGTCAACGTAAATTGTCATCATCTCCTTTCACTTTACCCTTACCTAAGGCTATTGCTTGTTCTGAAGCTAATTCTGCAAGTTAA

Coding sequence (CDS)

ATGAAAATGAAGCCTACACAACAACAACATACTAAGCCTACGCCTCACCCAATTCCTCCCAACTCCAGCAAAGTTATACATTTTGTTCCACAAACAACCCAACAACGAATGCTAGCTACACAGAAAGACTTAGAAAACGACTCAAATAGCACCTGGGTAAAAGGCTCGATGTCAATCTCAATTTCCTTCCCGGTCAGCGTCAGTCTCAATATCTATAAAATTAGCACCAAACTCGTAAGTAGCAGTAGGTATTTTGATGGTTTCAGCAGATTGGTTAGGAATCTCAGTTGGTCCCATAACACACTGATTAGTCATCGATGGTTGATAACGCATAGTTATCAGCTAAAATTTGATAAGAATTCAAATGGTTACAATTCATATAAGTTTGAAAATATTGGAAGATGA

Protein sequence

MKMKPTQQQHTKPTPHPIPPNSSKVIHFVPQTTQQRMLATQKDLENDSNSTWVKGSMSISISFPVSVSLNIYKISTKLVSSSRYFDGFSRLVRNLSWSHNTLISHRWLITHSYQLKFDKNSNGYNSYKFENIGR

Homology

[Close]

BLAST of CsGy5G005900 vs. NCBI nr
Match: KGN50434.1 (hypothetical protein Csa_5G174600 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 4.7e-07
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 3  MKPTQQQHTKPTPHPIPPNSSKVIHFVPQ 32
          MKPTQQQHTKPTPHPIPPNSSKVIHFVPQ
Sbjct: 1  MKPTQQQHTKPTPHPIPPNSSKVIHFVPQ 29

[Close]

BLAST of CsGy5G005900 vs. TrEMBL
Match: tr|A0A0A0KNG9|A0A0A0KNG9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G174600 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.1e-07
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 3  MKPTQQQHTKPTPHPIPPNSSKVIHFVPQ 32
          MKPTQQQHTKPTPHPIPPNSSKVIHFVPQ
Sbjct: 1  MKPTQQQHTKPTPHPIPPNSSKVIHFVPQ 29

The following BLAST results are available for this feature:

BLAST of CsGy5G005900 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50434.1	4.7e-07	100.00	hypothetical protein Csa_5G174600 [Cucumis sativus]	[more]

BLAST of CsGy5G005900 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G005900 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G005900 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KNG9\|A0A0A0KNG9_CUCSA	3.1e-07	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G174600 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G005900.1	CsGy5G005900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G005900	Wax gourd	cgybwgoB420
CsGy5G005900	Cucumber (Gy14) v2	cgybcgybB087
CsGy5G005900	Cucurbita maxima (Rimu)	cgybcmaB601
CsGy5G005900	Cucurbita moschata (Rifu)	cgybcmoB573
CsGy5G005900	Cucurbita pepo (Zucchini)	cgybcpeB608
CsGy5G005900	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G005900	Bottle gourd (USVL1VR-Ls)	cgyblsiB294
CsGy5G005900	Melon (DHL92) v3.5.1	cgybmeB301
CsGy5G005900	Melon (DHL92) v3.6.1	cgybmedB301
CsGy5G005900	Melon (DHL92) v3.6.1	cgybmedB350
CsGy5G005900	Watermelon (Charleston Gray)	cgybwcgB332
CsGy5G005900	Watermelon (97103) v1	cgybwmB384
CsGy5G005900	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G005900	Silver-seed gourd	carcgybB0735
CsGy5G005900	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G005900	Cucumber (Chinese Long) v3	cgybcucB212
CsGy5G005900	Watermelon (97103) v2	cgybwmbB319