CsGy5G005410 (gene) Cucumber (Gy14) v2

Overview
NameCsGy5G005410
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionPutative pentatricopeptide repeat-containing protein At4g17915
LocationChr5 : 3510467 .. 3511849 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCCAAATATTCTACCAAGTTGTTGACTATTTGTGTCGCCTCATTTTGTAAATCTCACCAATTTCAGAAAGCTGAAATTGCTATTAAAGATGCCATTCGTTTAGGAGTTGTTCCCGACATACTAACTTACAATATTTTGATTAATGGGTATTGCCAATTTAGCGACATGGATGCTGCTTATTCTGTCTTTCATAAAATGAGGGACGCTGGCATTACTCCAAATGTGTTTATTTATACTTCTTTGATGGCTGCTGCATCCAGAAATTCTTCATTAGAACAATGCCTTAATCTGTTTCATGAAATGCTTCAATTAGGTATCACTCCTGATGTATGGAGTTACACCACTTTGACCCACTGTTTCCTTAAAGTAGGAAAGCCAGATGAAGCTAATAGCATTTTTTTGGATTTTATACTTAAAGACCACTCCCCTAATCCTGCTACGTTTGATGTGATGATTTTCGGCTTTTGCAGTTGTGGATATACAAGTAATGCTATTACGTTGTTTAGAAATTTGCAGAGCCATGGACTTGTTCCTAAATTTGTTACATATGACATTCTTCTTACTGGACTTTGCAAGGCGGCTAGGTTGAATGTCTCTGTAAGTATGTTCAACGAGGCTATGAGTATGTTCAATGAGGCCATCGATTCAGGTTTTGAGCCCGATTCTACTACATACATTGCGTTGATGAAATGTTGCTTCAAATTTAGAGAGTATCAACATGGATTCGAGATATTCTTTGAAATGAAAAACAAGGGCCTTGCTTTTAATGGTTTTGGTTACTACACTGCTATTGGTGCTTTACTTCGGTTAGGTAGGCTTGAAGAGGCAAAATTTTTTATGGTAGAGATGATAAAGAATGGAGTGGTATTTAATTTAGTTTTTTATAACACAGTTGTTAATTTGTACTGTAAACATGGTAAATTGGAGGCTGCACATAAGATGTTGGATAAGATAGAGTCACGGGGATTACAATGCAACGATTACACACATGCTATAATCACTGATGGGTTATGTAAGGTTGGCAATTTTGAGGGGGCTCGACGACATTTGAATTATATCTATCCAACAGGTTTTACTAATTCAAACGTGGTAGCCTCGAGTTGTCTAATTGATAGGTTATGTAAGGCTGGACAAATTGACCAAGCAATGCAACTGTTTGAATTAATGGAAACAAAGGATCCTTATGTCTACACCTCTTTGATGCACAATCTTTGCAAGGCAAGGAGATTCCTTTGTGCATCAAAGTTATTGCTCGACTGCTTAAGAAGTGGCATCAGTGTTTTTCGGTCCACACAATGTGCAGTTATCTTCGGTCTTTGTTCTTTTGGATTTACAAGTGAAGCAAGGAAGCTCAAACCTTTCATTCATTTATCATAA

mRNA sequence

ATGGTTTCCAAATATTCTACCAAGTTGTTGACTATTTGTGTCGCCTCATTTTGTAAATCTCACCAATTTCAGAAAGCTGAAATTGCTATTAAAGATGCCATTCGTTTAGGAGTTGTTCCCGACATACTAACTTACAATATTTTGATTAATGGGTATTGCCAATTTAGCGACATGGATGCTGCTTATTCTGTCTTTCATAAAATGAGGGACGCTGGCATTACTCCAAATGTGTTTATTTATACTTCTTTGATGGCTGCTGCATCCAGAAATTCTTCATTAGAACAATGCCTTAATCTGTTTCATGAAATGCTTCAATTAGGTATCACTCCTGATGTATGGAGTTACACCACTTTGACCCACTGTTTCCTTAAAGTAGGAAAGCCAGATGAAGCTAATAGCATTTTTTTGGATTTTATACTTAAAGACCACTCCCCTAATCCTGCTACGTTTGATGTGATGATTTTCGGCTTTTGCAGTTGTGGATATACAAGTAATGCTATTACGTTGTTTAGAAATTTGCAGAGCCATGGACTTGTTCCTAAATTTGTTACATATGACATTCTTCTTACTGGACTTTGCAAGGCGGCTAGGTTGAATGTCTCTGTAAGTATGTTCAACGAGGCTATGAGTATGTTCAATGAGGCCATCGATTCAGGTTTTGAGCCCGATTCTACTACATACATTGCGTTGATGAAATGTTGCTTCAAATTTAGAGAGTATCAACATGGATTCGAGATATTCTTTGAAATGAAAAACAAGGGCCTTGCTTTTAATGGTTTTGGTTACTACACTGCTATTGGTGCTTTACTTCGGTTAGGTAGGCTTGAAGAGGCAAAATTTTTTATGGTAGAGATGATAAAGAATGGAGTGGTATTTAATTTAGTTTTTTATAACACAGTTGTTAATTTGTACTGTAAACATGGTAAATTGGAGGCTGCACATAAGATGTTGGATAAGATAGAGTCACGGGGATTACAATGCAACGATTACACACATGCTATAATCACTGATGGGTTATGTAAGGTTGGCAATTTTGAGGGGGCTCGACGACATTTGAATTATATCTATCCAACAGGTTTTACTAATTCAAACGTGGTAGCCTCGAGTTGTCTAATTGATAGGTTATGTAAGGCTGGACAAATTGACCAAGCAATGCAACTGTTTGAATTAATGGAAACAAAGGATCCTTATGTCTACACCTCTTTGATGCACAATCTTTGCAAGGCAAGGAGATTCCTTTGTGCATCAAAGTTATTGCTCGACTGCTTAAGAAGTGGCATCAGTGTTTTTCGGTCCACACAATGTGCAGTTATCTTCGGTCTTTGTTCTTTTGGATTTACAAGTGAAGCAAGGAAGCTCAAACCTTTCATTCATTTATCATAA

Coding sequence (CDS)

ATGGTTTCCAAATATTCTACCAAGTTGTTGACTATTTGTGTCGCCTCATTTTGTAAATCTCACCAATTTCAGAAAGCTGAAATTGCTATTAAAGATGCCATTCGTTTAGGAGTTGTTCCCGACATACTAACTTACAATATTTTGATTAATGGGTATTGCCAATTTAGCGACATGGATGCTGCTTATTCTGTCTTTCATAAAATGAGGGACGCTGGCATTACTCCAAATGTGTTTATTTATACTTCTTTGATGGCTGCTGCATCCAGAAATTCTTCATTAGAACAATGCCTTAATCTGTTTCATGAAATGCTTCAATTAGGTATCACTCCTGATGTATGGAGTTACACCACTTTGACCCACTGTTTCCTTAAAGTAGGAAAGCCAGATGAAGCTAATAGCATTTTTTTGGATTTTATACTTAAAGACCACTCCCCTAATCCTGCTACGTTTGATGTGATGATTTTCGGCTTTTGCAGTTGTGGATATACAAGTAATGCTATTACGTTGTTTAGAAATTTGCAGAGCCATGGACTTGTTCCTAAATTTGTTACATATGACATTCTTCTTACTGGACTTTGCAAGGCGGCTAGGTTGAATGTCTCTGTAAGTATGTTCAACGAGGCTATGAGTATGTTCAATGAGGCCATCGATTCAGGTTTTGAGCCCGATTCTACTACATACATTGCGTTGATGAAATGTTGCTTCAAATTTAGAGAGTATCAACATGGATTCGAGATATTCTTTGAAATGAAAAACAAGGGCCTTGCTTTTAATGGTTTTGGTTACTACACTGCTATTGGTGCTTTACTTCGGTTAGGTAGGCTTGAAGAGGCAAAATTTTTTATGGTAGAGATGATAAAGAATGGAGTGGTATTTAATTTAGTTTTTTATAACACAGTTGTTAATTTGTACTGTAAACATGGTAAATTGGAGGCTGCACATAAGATGTTGGATAAGATAGAGTCACGGGGATTACAATGCAACGATTACACACATGCTATAATCACTGATGGGTTATGTAAGGTTGGCAATTTTGAGGGGGCTCGACGACATTTGAATTATATCTATCCAACAGGTTTTACTAATTCAAACGTGGTAGCCTCGAGTTGTCTAATTGATAGGTTATGTAAGGCTGGACAAATTGACCAAGCAATGCAACTGTTTGAATTAATGGAAACAAAGGATCCTTATGTCTACACCTCTTTGATGCACAATCTTTGCAAGGCAAGGAGATTCCTTTGTGCATCAAAGTTATTGCTCGACTGCTTAAGAAGTGGCATCAGTGTTTTTCGGTCCACACAATGTGCAGTTATCTTCGGTCTTTGTTCTTTTGGATTTACAAGTGAAGCAAGGAAGCTCAAACCTTTCATTCATTTATCATAA

Protein sequence

MVSKYSTKLLTICVASFCKSHQFQKAEIAIKDAIRLGVVPDILTYNILINGYCQFSDMDAAYSVFHKMRDAGITPNVFIYTSLMAAASRNSSLEQCLNLFHEMLQLGITPDVWSYTTLTHCFLKVGKPDEANSIFLDFILKDHSPNPATFDVMIFGFCSCGYTSNAITLFRNLQSHGLVPKFVTYDILLTGLCKAARLNVSVSMFNEAMSMFNEAIDSGFEPDSTTYIALMKCCFKFREYQHGFEIFFEMKNKGLAFNGFGYYTAIGALLRLGRLEEAKFFMVEMIKNGVVFNLVFYNTVVNLYCKHGKLEAAHKMLDKIESRGLQCNDYTHAIITDGLCKVGNFEGARRHLNYIYPTGFTNSNVVASSCLIDRLCKAGQIDQAMQLFELMETKDPYVYTSLMHNLCKARRFLCASKLLLDCLRSGISVFRSTQCAVIFGLCSFGFTSEARKLKPFIHLS
Homology
[Close]
BLAST of CsGy5G005410 vs. NCBI nr
Match: XP_004143717.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis sativus] >XP_011654877.1 PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis sativus] >XP_011654878.1 PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis sativus] >XP_011654879.1 PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis sativus] >XP_011654880.1 PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis sativus] >XP_011654881.1 PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis sativus])

HSP 1 Score: 320.5 bits (820), Expect = 9.5e-84
Identity = 460/460 (100.00%), Postives = 460/460 (100.00%), Query Frame = 0 

Query: 1   MVSKYSTKLLTICVASFCKSHQFQKAEIAIKDAIRLGVVPDILTYNILIXXXXXXXXXXX 60
           MVSKYSTKLLTICVASFCKSHQFQKAEIAIKDAIRLGVVPDILTYNILIXXXXXXXXXXX
Sbjct: 1   MVSKYSTKLLTICVASFCKSHQFQKAEIAIKDAIRLGVVPDILTYNILIXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGFEPDSTTYIALMKCCFKFREY 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGFEPDSTTYIALMKCCFKFREY
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGFEPDSTTYIALMKCCFKFREY 240

Query: 241 QHGFEIFFEMKNKGLAFNGFGYYTAIGALLRLGXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           QHGFEIFFEMKNKGLAFNGFGYYTAIGALLRLGXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 QHGFEIFFEMKNKGLAFNGFGYYTAIGALLRLGXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF 360

Query: 361 TNSNVVASSCLIDRLCKAGQIDQAMQLFELMETKDPYVYTSLMHNLCKARRFLCASKLLL 420
           TNSNVVASSCLIDRLCKAGQIDQAMQLFELMETKDPYVYTSLMHNLCKARRFLCASKLLL
Sbjct: 361 TNSNVVASSCLIDRLCKAGQIDQAMQLFELMETKDPYVYTSLMHNLCKARRFLCASKLLL 420

Query: 421 DCLRSGISVFRSTQCAVIFGLCSFGFTSEARKLKPFIHLS 461
           DCLRSGISVFRSTQCAVIFGLCSFGFTSEARKLKPFIHLS
Sbjct: 421 DCLRSGISVFRSTQCAVIFGLCSFGFTSEARKLKPFIHLS 460

[Close]
BLAST of CsGy5G005410 vs. NCBI nr
Match: XP_008467270.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis melo] >XP_008467271.1 PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis melo] >XP_008467272.1 PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis melo] >XP_008467273.1 PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis melo] >XP_008467274.1 PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis melo] >XP_016903432.1 PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis melo])

HSP 1 Score: 295.8 bits (756), Expect = 2.5e-76
Identity = 438/458 (95.63%), Postives = 439/458 (95.85%), Query Frame = 0 

Query: 1   MVSKYSTKLLTICVASFCKSHQFQKAEIAIKDAIRLGVVPDILTYNILIXXXXXXXXXXX 60
           MVSKYSTKLLTICVASFCKS QFQKAEIAIKDAIRLGVVPDILTYN   XXXXXXXXXXX
Sbjct: 1   MVSKYSTKLLTICVASFCKSQQFQKAEIAIKDAIRLGVVPDILTYNXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGFEPDSTTYIALMKCCFKFREY 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GFEPD TTYIALMKCCFKFREY
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGFEPDYTTYIALMKCCFKFREY 240

Query: 241 QHGFEIFFEMKNKGLAFNGFGYYTAIGALLRLGXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           QHGFEIFFEMKNKGLAFNGFGYYTAIGALLRLG       XXXXXXXXXXXXXXXXXXXX
Sbjct: 241 QHGFEIFFEMKNKGLAFNGFGYYTAIGALLRLGRLEEANFXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   F
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTGF 360

Query: 361 TNSNVVASSCLIDRLCKAGQIDQAMQLFELMETKDPYVYTSLMHNLCKARRFLCASKLLL 420
           TNSNVVASSCLIDRLCKAGQIDQAM+LFELMETKDPY YTSLMHNLCKARRFLCASKLLL
Sbjct: 361 TNSNVVASSCLIDRLCKAGQIDQAMKLFELMETKDPYTYTSLMHNLCKARRFLCASKLLL 420

Query: 421 DCLRSGISVFRSTQCAVIFGLCSFGFTSEARKLKPFIH 459
           DCLRSGISVFRSTQCAVIFGLCS GFTSEARKLKPFIH
Sbjct: 421 DCLRSGISVFRSTQCAVIFGLCSLGFTSEARKLKPFIH 458

[Close]
BLAST of CsGy5G005410 vs. NCBI nr
Match: KGN50380.1 (hypothetical protein Csa_5G171145 [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 2.8e-75
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0 

Query: 217 DSGFEPDSTTYIALMKCCFKFREYQHGFEIFFEMKNKGLAFNGFGYYTAIGALLRLGXXX 276
           DSGFEPDSTTYIALMKCCFKFREYQHGFEIFFEMKNKGLAFNGFGYYTAIGALLRLGXXX
Sbjct: 160 DSGFEPDSTTYIALMKCCFKFREYQHGFEIFFEMKNKGLAFNGFGYYTAIGALLRLGXXX 219

Query: 277 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 336
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 220 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 279

Query: 337 XXXXXXXXXXXXXXXXXXXXXXXFTNSNVVASSCLIDRLCKAGQIDQAMQLFELMETKDP 396
           XXXXXXXXXXXXXXXXXXXXXXXFTNSNVVASSCLIDRLCKAGQIDQAMQLFELMETKDP
Sbjct: 280 XXXXXXXXXXXXXXXXXXXXXXXFTNSNVVASSCLIDRLCKAGQIDQAMQLFELMETKDP 339

Query: 397 YVYTSLMHNLCKARRFLCASKLLLDCLRSGISVFRSTQCAVIFGLCSFGFTSEARKLKPF 456
           YVYTSLMHNLCKARRFLCASKLLLDCLRSGISVFRSTQCAVIFGLCSFGFTSEARKLKPF
Sbjct: 340 YVYTSLMHNLCKARRFLCASKLLLDCLRSGISVFRSTQCAVIFGLCSFGFTSEARKLKPF 399

Query: 457 IHLS 461
           IHLS
Sbjct: 400 IHLS 403

[Close]
BLAST of CsGy5G005410 vs. NCBI nr
Match: XP_023554660.1 (putative pentatricopeptide repeat-containing protein At4g17915 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-25
Identity = 62/98 (63.27%), Postives = 78/98 (79.59%), Query Frame = 0 

Query: 363 SNVVASSCLIDRLCKAGQIDQAMQLFELMETKDPYVYTSLMHNLCKARRFLCASKLLLDC 422
           SN+VA +CLIDRL KAGQID AM+LFE ME +D + YTSL+HNLCKARRF CASKLL+ C
Sbjct: 355 SNLVALNCLIDRLGKAGQIDHAMKLFESMEIRDSFTYTSLVHNLCKARRFRCASKLLISC 414

Query: 423 LRSGISVFRSTQCAVIFGLCSFGFTSEARKLKPFIHLS 461
           ++ G+ V +STQ  VI GL S GFTSEARK++  + ++
Sbjct: 415 IKGGMKVLKSTQRTVIDGLRSSGFTSEARKVRSKLRMA 452

[Close]
BLAST of CsGy5G005410 vs. NCBI nr
Match: XP_023554661.1 (putative pentatricopeptide repeat-containing protein At4g17915 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023554662.1 putative pentatricopeptide repeat-containing protein At4g17915 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-25
Identity = 62/98 (63.27%), Postives = 78/98 (79.59%), Query Frame = 0 

Query: 363 SNVVASSCLIDRLCKAGQIDQAMQLFELMETKDPYVYTSLMHNLCKARRFLCASKLLLDC 422
           SN+VA +CLIDRL KAGQID AM+LFE ME +D + YTSL+HNLCKARRF CASKLL+ C
Sbjct: 333 SNLVALNCLIDRLGKAGQIDHAMKLFESMEIRDSFTYTSLVHNLCKARRFRCASKLLISC 392

Query: 423 LRSGISVFRSTQCAVIFGLCSFGFTSEARKLKPFIHLS 461
           ++ G+ V +STQ  VI GL S GFTSEARK++  + ++
Sbjct: 393 IKGGMKVLKSTQRTVIDGLRSSGFTSEARKVRSKLRMA 430

[Close]
BLAST of CsGy5G005410 vs. TAIR10
Match: AT5G46680.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-09
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 0 

Query: 385 MQLFELMETKDPYVYTSLMHNLCKARRFLCASKLLLDCLRSGISVFRSTQCAVIFGLCSF 444
           M+LF  ME +D + YTS++HNLCK  R +CASKLLL C   G+ +  S + AV+ G+   
Sbjct: 384 MRLFASMEVRDEFTYTSVVHNLCKDGRLVCASKLLLSCYNKGMKIPSSARRAVLSGIRET 443

Query: 445 GFTSEARK 453
                ARK
Sbjct: 444 VSYQAARK 451

[Close]
BLAST of CsGy5G005410 vs. Swiss-Prot
Match: sp|P0C043|PP318_ARATH (Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis thaliana OX=3702 GN=At4g17915 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.6e-11
Identity = 36/69 (52.17%), Postives = 44/69 (63.77%), Query Frame = 0 

Query: 392 ETKDPYVYTSLMHNLCKARRFLCASKLLLDCLRSGISVFRSTQCAVIFGLCSFGFTSEAR 451
           E KD Y YTS++HNLCK  RF+CASKLLL C   GI +  S + AV+ GL   G   EAR
Sbjct: 390 EVKDEYTYTSVVHNLCKDMRFVCASKLLLSCYNKGIKIPTSARRAVLSGLRMSGCYGEAR 449

Query: 452 KLKPFIHLS 461
           K K  + L+
Sbjct: 450 KAKAEMKLT 458

[Close]
BLAST of CsGy5G005410 vs. Swiss-Prot
Match: sp|Q56XR6|PP421_ARATH (Pentatricopeptide repeat-containing protein At5g46680 OS=Arabidopsis thaliana OX=3702 GN=At5g46680 PE=2 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-08
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 0 

Query: 385 MQLFELMETKDPYVYTSLMHNLCKARRFLCASKLLLDCLRSGISVFRSTQCAVIFGLCSF 444
           M+LF  ME +D + YTS++HNLCK  R +CASKLLL C   G+ +  S + AV+ G+   
Sbjct: 384 MRLFASMEVRDEFTYTSVVHNLCKDGRLVCASKLLLSCYNKGMKIPSSARRAVLSGIRET 443

Query: 445 GFTSEARK 453
                ARK
Sbjct: 444 VSYQAARK 451

[Close]
BLAST of CsGy5G005410 vs. TrEMBL
Match: tr|A0A1S3CT66|A0A1S3CT66_CUCME (putative pentatricopeptide repeat-containing protein At4g17915 OS=Cucumis melo OX=3656 GN=LOC103504665 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.7e-76
Identity = 438/458 (95.63%), Postives = 439/458 (95.85%), Query Frame = 0 

Query: 1   MVSKYSTKLLTICVASFCKSHQFQKAEIAIKDAIRLGVVPDILTYNILIXXXXXXXXXXX 60
           MVSKYSTKLLTICVASFCKS QFQKAEIAIKDAIRLGVVPDILTYN   XXXXXXXXXXX
Sbjct: 1   MVSKYSTKLLTICVASFCKSQQFQKAEIAIKDAIRLGVVPDILTYNXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGFEPDSTTYIALMKCCFKFREY 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GFEPD TTYIALMKCCFKFREY
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGFEPDYTTYIALMKCCFKFREY 240

Query: 241 QHGFEIFFEMKNKGLAFNGFGYYTAIGALLRLGXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           QHGFEIFFEMKNKGLAFNGFGYYTAIGALLRLG       XXXXXXXXXXXXXXXXXXXX
Sbjct: 241 QHGFEIFFEMKNKGLAFNGFGYYTAIGALLRLGRLEEANFXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   F
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTGF 360

Query: 361 TNSNVVASSCLIDRLCKAGQIDQAMQLFELMETKDPYVYTSLMHNLCKARRFLCASKLLL 420
           TNSNVVASSCLIDRLCKAGQIDQAM+LFELMETKDPY YTSLMHNLCKARRFLCASKLLL
Sbjct: 361 TNSNVVASSCLIDRLCKAGQIDQAMKLFELMETKDPYTYTSLMHNLCKARRFLCASKLLL 420

Query: 421 DCLRSGISVFRSTQCAVIFGLCSFGFTSEARKLKPFIH 459
           DCLRSGISVFRSTQCAVIFGLCS GFTSEARKLKPFIH
Sbjct: 421 DCLRSGISVFRSTQCAVIFGLCSLGFTSEARKLKPFIH 458

[Close]
BLAST of CsGy5G005410 vs. TrEMBL
Match: tr|A0A0A0KL08|A0A0A0KL08_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G171145 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.8e-75
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0 

Query: 217 DSGFEPDSTTYIALMKCCFKFREYQHGFEIFFEMKNKGLAFNGFGYYTAIGALLRLGXXX 276
           DSGFEPDSTTYIALMKCCFKFREYQHGFEIFFEMKNKGLAFNGFGYYTAIGALLRLGXXX
Sbjct: 160 DSGFEPDSTTYIALMKCCFKFREYQHGFEIFFEMKNKGLAFNGFGYYTAIGALLRLGXXX 219

Query: 277 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 336
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 220 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 279

Query: 337 XXXXXXXXXXXXXXXXXXXXXXXFTNSNVVASSCLIDRLCKAGQIDQAMQLFELMETKDP 396
           XXXXXXXXXXXXXXXXXXXXXXXFTNSNVVASSCLIDRLCKAGQIDQAMQLFELMETKDP
Sbjct: 280 XXXXXXXXXXXXXXXXXXXXXXXFTNSNVVASSCLIDRLCKAGQIDQAMQLFELMETKDP 339

Query: 397 YVYTSLMHNLCKARRFLCASKLLLDCLRSGISVFRSTQCAVIFGLCSFGFTSEARKLKPF 456
           YVYTSLMHNLCKARRFLCASKLLLDCLRSGISVFRSTQCAVIFGLCSFGFTSEARKLKPF
Sbjct: 340 YVYTSLMHNLCKARRFLCASKLLLDCLRSGISVFRSTQCAVIFGLCSFGFTSEARKLKPF 399

Query: 457 IHLS 461
           IHLS
Sbjct: 400 IHLS 403

[Close]
BLAST of CsGy5G005410 vs. TrEMBL
Match: tr|A0A0B2QXD6|A0A0B2QXD6_GLYSO (Putative pentatricopeptide repeat-containing protein OS=Glycine soja OX=3848 GN=glysoja_030422 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-18
Identity = 49/97 (50.52%), Postives = 72/97 (74.23%), Query Frame = 0 

Query: 364 NVVASSCLIDRLCKAGQIDQAMQLFELMETKDPYVYTSLMHNLCKARRFLCASKLLLDCL 423
           N+VA +CL++ L K G ID A++LF++ME KD + YT ++HNLC+A++FLCASK+L+ CL
Sbjct: 331 NLVAFNCLLNGLGKVGYIDHALRLFKVMEVKDSFTYTIVVHNLCRAKQFLCASKVLVSCL 390

Query: 424 RSGISVFRSTQCAVIFGLCSFGFTSEARKLKPFIHLS 461
           + G  V R+TQ  VI  L S G+ +EAR++K  I L+
Sbjct: 391 KCGYQVLRATQREVIVCLQSIGYANEARRVKSRIRLA 427


HSP 2 Score: 49.7 bits (117), Expect = 2.1e-02
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 0 

Query: 6   STKLLTICVASFCKSHQFQKAEIAIKDAIRLGVVPDILTYNILI 50
           +TK L I V+S CK+ Q  KA+ AI D IRLG++PD +TYN LI
Sbjct: 71  NTKPLNITVSSLCKAKQIPKAKTAIVDGIRLGLLPDAVTYNPLI 114

[Close]
BLAST of CsGy5G005410 vs. TrEMBL
Match: tr|A0A1J3GE61|A0A1J3GE61_NOCCA (Putative pentatricopeptide repeat-containing protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=LC_TR3713_c0_g1_i1_g.13776 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-18
Identity = 51/97 (52.58%), Postives = 66/97 (68.04%), Query Frame = 0 

Query: 364 NVVASSCLIDRLCKAGQIDQAMQLFELMETKDPYVYTSLMHNLCKARRFLCASKLLLDCL 423
           N+V  +CL+D LCKAG +D+AM+LFE ME KD Y YTS++HNLCK  RF+CASKLLL C 
Sbjct: 281 NLVTCNCLVDGLCKAGHVDRAMRLFESMEVKDEYTYTSVVHNLCKDMRFVCASKLLLSCY 340

Query: 424 RSGISVFRSTQCAVIFGLCSFGFTSEARKLKPFIHLS 461
             GI +  S + AV+ GL   G   EA+  K  + L+
Sbjct: 341 SKGIKIPASARRAVLSGLRMSGCYGEAKLAKAKMKLT 377

[Close]
BLAST of CsGy5G005410 vs. TrEMBL
Match: tr|A0A1J3JDS9|A0A1J3JDS9_NOCCA (Putative pentatricopeptide repeat-containing protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR4436_c2_g1_i1_g.11642 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-18
Identity = 51/97 (52.58%), Postives = 66/97 (68.04%), Query Frame = 0 

Query: 364 NVVASSCLIDRLCKAGQIDQAMQLFELMETKDPYVYTSLMHNLCKARRFLCASKLLLDCL 423
           N+V  +CL+D LCKAG +D+AM+LFE ME KD Y YTS++HNLCK  RF+CASKLLL C 
Sbjct: 21  NLVTCNCLVDGLCKAGHVDRAMRLFESMEVKDEYTYTSVVHNLCKDMRFVCASKLLLSCY 80

Query: 424 RSGISVFRSTQCAVIFGLCSFGFTSEARKLKPFIHLS 461
             GI +  S + AV+ GL   G   EA+  K  + L+
Sbjct: 81  SKGIKIPASARRAVLSGLRMSGCYGEAKLAKAKMKLT 117

The following BLAST results are available for this feature:
BLAST of CsGy5G005410 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143717.19.5e-84100.00PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucum... [more]
XP_008467270.12.5e-7695.63PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucum... [more]
KGN50380.12.8e-75100.00hypothetical protein Csa_5G171145 [Cucumis sativus][more]
XP_023554660.12.6e-2563.27putative pentatricopeptide repeat-containing protein At4g17915 isoform X1 [Cucur... [more]
XP_023554661.12.6e-2563.27putative pentatricopeptide repeat-containing protein At4g17915 isoform X2 [Cucur... [more]
BLAST of CsGy5G005410 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G46680.11.1e-0945.59Pentatricopeptide repeat (PPR-like) superfamily protein[more]
BLAST of CsGy5G005410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P0C043|PP318_ARATH5.6e-1152.17Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis th... [more]
sp|Q56XR6|PP421_ARATH2.0e-0845.59Pentatricopeptide repeat-containing protein At5g46680 OS=Arabidopsis thaliana OX... [more]
BLAST of CsGy5G005410 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CT66|A0A1S3CT66_CUCME1.7e-7695.63putative pentatricopeptide repeat-containing protein At4g17915 OS=Cucumis melo O... [more]
tr|A0A0A0KL08|A0A0A0KL08_CUCSA1.8e-75100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G171145 PE=4 SV=1[more]
tr|A0A0B2QXD6|A0A0B2QXD6_GLYSO1.2e-1850.52Putative pentatricopeptide repeat-containing protein OS=Glycine soja OX=3848 GN=... [more]
tr|A0A1J3GE61|A0A1J3GE61_NOCCA1.6e-1852.58Putative pentatricopeptide repeat-containing protein (Fragment) OS=Noccaea caeru... [more]
tr|A0A1J3JDS9|A0A1J3JDS9_NOCCA1.6e-1852.58Putative pentatricopeptide repeat-containing protein (Fragment) OS=Noccaea caeru... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G005410.1CsGy5G005410.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 369..392
e-value: 2.6E-6
score: 26.9
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 211..256
e-value: 1.6E-5
score: 24.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 145..194
e-value: 4.3E-8
score: 33.1
coord: 40..84
e-value: 2.7E-12
score: 46.6
coord: 293..341
e-value: 1.4E-12
score: 47.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 114..146
e-value: 0.0011
score: 17.0
coord: 44..77
e-value: 1.5E-10
score: 38.6
coord: 226..255
e-value: 2.1E-4
score: 19.2
coord: 183..223
e-value: 0.0027
score: 15.8
coord: 79..112
e-value: 1.1E-5
score: 23.3
coord: 296..328
e-value: 2.5E-7
score: 28.5
coord: 369..394
e-value: 3.4E-5
score: 21.7
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 398..427
e-value: 0.19
score: 11.9
coord: 264..290
e-value: 0.029
score: 14.5
coord: 114..137
e-value: 0.033
score: 14.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 293..327
score: 11.181
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 76..110
score: 10.643
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 111..145
score: 9.175
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 6..40
score: 6.95
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 223..257
score: 9.624
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 258..292
score: 8.429
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 41..75
score: 13.493
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 181..211
score: 7.125
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 146..180
score: 10.457
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 328..362
score: 6.939
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 364..398
score: 9.427
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 399..429
score: 5.448
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 360..456
e-value: 4.8E-13
score: 51.3
coord: 238..359
e-value: 2.6E-25
score: 91.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 3..72
e-value: 1.5E-12
score: 49.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 86..237
e-value: 2.1E-32
score: 114.7
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILYSSF48452TPR-likecoord: 196..319
coord: 21..152
NoneNo IPR availablePANTHERPTHR24015:SF489SUBFAMILY NOT NAMEDcoord: 3..447
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 3..447