CsGy5G004350 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G004350
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	DNA mismatch repair protein MSH4
Location	Chr5 : 2876250 .. 2876729 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCAACCTAGTCATATCTCAACTGGTGAAGCAATAATATATTATCAACCTAAAGGTCGAGCTTCAAATCGTCAGTGTCTAGTCCTTTTTTGTCCCTTTGTAAAATTCATTGCTCATCATTTCTTATTCTAATTTAATCACTAGTATGTCCATAGATATGGAAAAATTTTATTGTCAAAATAATAACATGTAGGATCCATAAACTAAATATATATAATTTAATAATGATTAAATTTGAGAGTAGGTATTACAATAGTAGTAAAATCTATTCAGATTTGGGTTCACAGGCGAACTTCAACAAAATGTACTTACCGCTTCTTTGTCTGCCTCAGCTATACCATATTTGCCACTCATATGGAGGGCCTATCAGAGCTGGCAGCCATCTATCCAAACGTAAAAATTCTTCACTTCTATGTGGATATAAGGAATAACCGTTTGGATTTCAAGGTACTGTTTTCCAGTTCTGTTAGTCTATAA

mRNA sequence

ATGCATCAACCTAGTCATATCTCAACTGGTGAAGCAATAATATATTATCAACCTAAAGGTCGAGCTTCAAATCGTCACTATACCATATTTGCCACTCATATGGAGGGCCTATCAGAGCTGGCAGCCATCTATCCAAACGTAAAAATTCTTCACTTCTATGTGGATATAAGGAATAACCGTTTGGATTTCAAGGTACTGTTTTCCAGTTCTGTTAGTCTATAA

Coding sequence (CDS)

ATGCATCAACCTAGTCATATCTCAACTGGTGAAGCAATAATATATTATCAACCTAAAGGTCGAGCTTCAAATCGTCACTATACCATATTTGCCACTCATATGGAGGGCCTATCAGAGCTGGCAGCCATCTATCCAAACGTAAAAATTCTTCACTTCTATGTGGATATAAGGAATAACCGTTTGGATTTCAAGGTACTGTTTTCCAGTTCTGTTAGTCTATAA

Protein sequence

MHQPSHISTGEAIIYYQPKGRASNRHYTIFATHMEGLSELAAIYPNVKILHFYVDIRNNRLDFKVLFSSSVSL

Homology

[Close]

BLAST of CsGy5G004350 vs. NCBI nr
Match: XP_008437055.1 (PREDICTED: DNA mismatch repair protein MSH4 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-11
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 8   STGEAIIYYQPKGRASNRHYTIFATHMEGLSELAAIYPNVKILHFYVDIRNNRLDFK 65
           S G AI +   +   + + YTIFATHMEGLSELA IYPNVKILHF+VDIRNNRLDFK
Sbjct: 638 SDGFAIAWSCCEHLLTLKAYTIFATHMEGLSELATIYPNVKILHFHVDIRNNRLDFK 694

[Close]

BLAST of CsGy5G004350 vs. NCBI nr
Match: KNA15413.1 (hypothetical protein SOVF_098510 [Spinacia oleracea])

HSP 1 Score: 77.0 bits (188), Expect = 2.9e-11
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 8   STGEAIIYYQPKGRASNRHYTIFATHMEGLSELAAIYPNVKILHFYVDIRNNRLDFK 65
           S G AI +   +   S + YTIFATHME LSELA +YPNVKILHF+VDIRNNRLDFK
Sbjct: 562 SDGFAIAWSVCEQLLSLKAYTIFATHMENLSELATLYPNVKILHFHVDIRNNRLDFK 618

[Close]

BLAST of CsGy5G004350 vs. NCBI nr
Match: XP_021855422.1 (DNA mismatch repair protein MSH4 [Spinacia oleracea])

HSP 1 Score: 77.0 bits (188), Expect = 2.9e-11
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 8   STGEAIIYYQPKGRASNRHYTIFATHMEGLSELAAIYPNVKILHFYVDIRNNRLDFK 65
           S G AI +   +   S + YTIFATHME LSELA +YPNVKILHF+VDIRNNRLDFK
Sbjct: 639 SDGFAIAWSVCEQLLSLKAYTIFATHMENLSELATLYPNVKILHFHVDIRNNRLDFK 695

[Close]

BLAST of CsGy5G004350 vs. NCBI nr
Match: POF05538.1 (dna mismatch repair protein msh4 [Quercus suber])

HSP 1 Score: 77.0 bits (188), Expect = 2.9e-11
Identity = 40/57 (70.18%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 8   STGEAIIYYQPKGRASNRHYTIFATHMEGLSELAAIYPNVKILHFYVDIRNNRLDFK 65
           S G AI +   +   S + YTIFATHME LSELA IYPNVKILHF+VDIRNNRLDFK
Sbjct: 191 SDGFAIAWSCCEYLLSLKAYTIFATHMENLSELATIYPNVKILHFHVDIRNNRLDFK 247

[Close]

BLAST of CsGy5G004350 vs. NCBI nr
Match: XP_023916464.1 (DNA mismatch repair protein MSH4 [Quercus suber])

HSP 1 Score: 77.0 bits (188), Expect = 2.9e-11
Identity = 40/57 (70.18%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 8   STGEAIIYYQPKGRASNRHYTIFATHMEGLSELAAIYPNVKILHFYVDIRNNRLDFK 65
           S G AI +   +   S + YTIFATHME LSELA IYPNVKILHF+VDIRNNRLDFK
Sbjct: 641 SDGFAIAWSCCEYLLSLKAYTIFATHMENLSELATIYPNVKILHFHVDIRNNRLDFK 697

[Close]

BLAST of CsGy5G004350 vs. TAIR10
Match: AT4G17380.1 (MUTS-like protein 4)

HSP 1 Score: 72.8 bits (177), Expect = 9.9e-14
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 23  SNRHYTIFATHMEGLSELAAIYPNVKILHFYVDIRNNRLDFK 65
           S + YT+FATHM+ L+ELA IYPNVK+LHFYVDIR+NRLDFK
Sbjct: 656 SLKAYTVFATHMDSLAELATIYPNVKVLHFYVDIRDNRLDFK 697

[Close]

BLAST of CsGy5G004350 vs. Swiss-Prot
Match: sp|F4JP48|MSH4_ARATH (DNA mismatch repair protein MSH4 OS=Arabidopsis thaliana OX=3702 GN=MSH4 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-12
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 23  SNRHYTIFATHMEGLSELAAIYPNVKILHFYVDIRNNRLDFK 65
           S + YT+FATHM+ L+ELA IYPNVK+LHFYVDIR+NRLDFK
Sbjct: 656 SLKAYTVFATHMDSLAELATIYPNVKVLHFYVDIRDNRLDFK 697

[Close]

BLAST of CsGy5G004350 vs. TrEMBL
Match: tr|A0A1S3ATN6|A0A1S3ATN6_CUCME (DNA mismatch repair protein MSH4 OS=Cucumis melo OX=3656 GN=LOC103482597 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.6e-12
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 8   STGEAIIYYQPKGRASNRHYTIFATHMEGLSELAAIYPNVKILHFYVDIRNNRLDFK 65
           S G AI +   +   + + YTIFATHMEGLSELA IYPNVKILHF+VDIRNNRLDFK
Sbjct: 638 SDGFAIAWSCCEHLLTLKAYTIFATHMEGLSELATIYPNVKILHFHVDIRNNRLDFK 694

[Close]

BLAST of CsGy5G004350 vs. TrEMBL
Match: tr|A0A2N9F3V5|A0A2N9F3V5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9690 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 40/57 (70.18%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 8   STGEAIIYYQPKGRASNRHYTIFATHMEGLSELAAIYPNVKILHFYVDIRNNRLDFK 65
           S G AI +   +   S + YTIFATHME LSELA IYPNVKILHF+VDIRNNRLDFK
Sbjct: 574 SDGFAIAWSCCEYLLSLKAYTIFATHMENLSELATIYPNVKILHFHVDIRNNRLDFK 630

[Close]

BLAST of CsGy5G004350 vs. TrEMBL
Match: tr|A0A2P4LJV9|A0A2P4LJV9_QUESU (Dna mismatch repair protein msh4 OS=Quercus suber OX=58331 GN=CFP56_18054 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 40/57 (70.18%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 8   STGEAIIYYQPKGRASNRHYTIFATHMEGLSELAAIYPNVKILHFYVDIRNNRLDFK 65
           S G AI +   +   S + YTIFATHME LSELA IYPNVKILHF+VDIRNNRLDFK
Sbjct: 191 SDGFAIAWSCCEYLLSLKAYTIFATHMENLSELATIYPNVKILHFHVDIRNNRLDFK 247

[Close]

BLAST of CsGy5G004350 vs. TrEMBL
Match: tr|A0A0K9R7A5|A0A0K9R7A5_SPIOL (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_098510 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 8   STGEAIIYYQPKGRASNRHYTIFATHMEGLSELAAIYPNVKILHFYVDIRNNRLDFK 65
           S G AI +   +   S + YTIFATHME LSELA +YPNVKILHF+VDIRNNRLDFK
Sbjct: 562 SDGFAIAWSVCEQLLSLKAYTIFATHMENLSELATLYPNVKILHFHVDIRNNRLDFK 618

[Close]

BLAST of CsGy5G004350 vs. TrEMBL
Match: tr|A0A199V3V1|A0A199V3V1_ANACO (Ribosomal protein L15 OS=Ananas comosus OX=4615 GN=ACMD2_08490 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-11
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 8   STGEAIIYYQPKGRASNRHYTIFATHMEGLSELAAIYPNVKILHFYVDIRNNRLDFK 65
           S G AI +   +   + + YTIFATHMEGLSELA IYPNVKILHF VD+RNNRLDFK
Sbjct: 618 SDGFAIAWSCCEHLLTLKAYTIFATHMEGLSELATIYPNVKILHFEVDLRNNRLDFK 674

The following BLAST results are available for this feature:

BLAST of CsGy5G004350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437055.1	1.0e-11	70.18	PREDICTED: DNA mismatch repair protein MSH4 [Cucumis melo]	[more]
KNA15413.1	2.9e-11	68.42	hypothetical protein SOVF_098510 [Spinacia oleracea]	[more]
XP_021855422.1	2.9e-11	68.42	DNA mismatch repair protein MSH4 [Spinacia oleracea]	[more]
POF05538.1	2.9e-11	70.18	dna mismatch repair protein msh4 [Quercus suber]	[more]
XP_023916464.1	2.9e-11	70.18	DNA mismatch repair protein MSH4 [Quercus suber]	[more]

BLAST of CsGy5G004350 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17380.1	9.9e-14	76.19	MUTS-like protein 4	[more]

BLAST of CsGy5G004350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4JP48\|MSH4_ARATH	1.8e-12	76.19	DNA mismatch repair protein MSH4 OS=Arabidopsis thaliana OX=3702 GN=MSH4 PE=2 SV...	[more]

BLAST of CsGy5G004350 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3ATN6\|A0A1S3ATN6_CUCME	6.6e-12	70.18	DNA mismatch repair protein MSH4 OS=Cucumis melo OX=3656 GN=LOC103482597 PE=4 SV...	[more]
tr\|A0A2N9F3V5\|A0A2N9F3V5_FAGSY	1.9e-11	70.18	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9690 PE=4 SV=1	[more]
tr\|A0A2P4LJV9\|A0A2P4LJV9_QUESU	1.9e-11	70.18	Dna mismatch repair protein msh4 OS=Quercus suber OX=58331 GN=CFP56_18054 PE=4 S...	[more]
tr\|A0A0K9R7A5\|A0A0K9R7A5_SPIOL	1.9e-11	68.42	Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_098510 PE=4 SV=1	[more]
tr\|A0A199V3V1\|A0A199V3V1_ANACO	3.3e-11	68.42	Ribosomal protein L15 OS=Ananas comosus OX=4615 GN=ACMD2_08490 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006298	mismatch repair
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030983	mismatched DNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G004350.1	CsGy5G004350.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G004350	Cucumber (Gy14) v2	cgybcgybB090
CsGy5G004350	Cucurbita maxima (Rimu)	cgybcmaB608
CsGy5G004350	Cucurbita maxima (Rimu)	cgybcmaB637
CsGy5G004350	Cucurbita maxima (Rimu)	cgybcmaB640
CsGy5G004350	Cucurbita maxima (Rimu)	cgybcmaB695
CsGy5G004350	Cucurbita moschata (Rifu)	cgybcmoB583
CsGy5G004350	Cucurbita moschata (Rifu)	cgybcmoB615
CsGy5G004350	Cucurbita moschata (Rifu)	cgybcmoB619
CsGy5G004350	Cucurbita moschata (Rifu)	cgybcmoB675
CsGy5G004350	Cucurbita pepo (Zucchini)	cgybcpeB597
CsGy5G004350	Cucurbita pepo (Zucchini)	cgybcpeB687
CsGy5G004350	Cucurbita pepo (Zucchini)	cgybcpeB693
CsGy5G004350	Cucurbita pepo (Zucchini)	cgybcpeB702
CsGy5G004350	Cucumber (Chinese Long) v2	cgybcuB211
CsGy5G004350	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G004350	Bottle gourd (USVL1VR-Ls)	cgyblsiB294
CsGy5G004350	Bottle gourd (USVL1VR-Ls)	cgyblsiB352
CsGy5G004350	Melon (DHL92) v3.5.1	cgybmeB298
CsGy5G004350	Melon (DHL92) v3.5.1	cgybmeB348
CsGy5G004350	Melon (DHL92) v3.6.1	cgybmedB298
CsGy5G004350	Watermelon (Charleston Gray)	cgybwcgB332
CsGy5G004350	Watermelon (97103) v1	cgybwmB348
CsGy5G004350	Wild cucumber (PI 183967)	cgybcpiB212
CsGy5G004350	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G004350	Silver-seed gourd	carcgybB0549
CsGy5G004350	Silver-seed gourd	carcgybB0911
CsGy5G004350	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G004350	Watermelon (97103) v2	cgybwmbB319
CsGy5G004350	Wax gourd	cgybwgoB414