CsGy5G004320 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G004320
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	DNA mismatch repair protein MSH4
Location	Chr5 : 2868661 .. 2871017 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAGAGGACGTATGAAACTGTGATGAAATAATATGAAACTTCATTTTATTCATATATATTTGTAATATACTTTAGTTTTAATTTATACAGATTTTTTGTTTTGATATTTAGTAATTAAACTAGCATGTGTATATAGTTTTTATACATTTGAACCAGAAATTTTCAAGGAAGATTTGGATATATGTCCGCTTAAATTTGGGTGCAAATTTTCAAATTTTGGTATAAGCAATGTTTTAAATTTTCACGTTGAAAGCATATCAATAAAAGACTTAATTTCACAAAAATTATAATATAAGCAATGTTTTAAATTTTCATGTTGAAAGCATATCAATAAAAGACTTAATTTCACAAAAAATATAATGAAAATATGCTTAAAATATCCTCGAGAAATGCACAAACAGCTTAGATGGAGTTTTATGTATATGGAAAGAAAATGCAACCTAATTAAACTTAAAAAAAAAAAAAGAAACCAACATTAAATTGATCTAGTGGTATAAATGTCATAACTAACTAAGAGATCATGGGTTGAATATGGTTGACTTAGTGGTAAAAATGTCATAACTAAGAGGTCATGAGTTAGATCTACGGTGCCTACCTACCTAGGAATTAATTTTCCATGGGTTTCCTTGAGTACACTAACATATATAAGAAAGCCTTAAAGAAAAGAAAAGAAAAACTCACCGAAATTAATATGGAGAAATGTTCGAGAGAAGGTACGAATTATGAAGAAAAGAATCCGCCTCTTGACACTCTTTAGAGAGAAGAGAGAAAAATAAAAAATCCACCTCGTAGAGAGAAAAATCAAGAATCGAACACGTCGAGAAAATTATGAAGAATCAGATCTCATTTGTATGTATATATATTTTTTTTGAACCAATATTAAGTTTCCCGCCAAATCCTAAATTGTAATTATTGTCTTTTTATGCTAAAATTTTTGAATATAAACAAATATATAAACAAACAAACTTTATGTCTAAAGATTCGATTTAATAATTTTTCAATATATATTTATTTTCGGACGTCGGATCGTTTCGCGCCAAAATCATGAGCCCATAACATTTCCACACTCAACGCTGGTAGTGCTCAATCGCTCATAACAGTGTTCAATTATACTAAAAAATTTAAAGTTTAAAATAGTAAATTTTAATTTTTTAAGATATTCAAATATTATAAGTTGGTAAAGTAAAATATTTGTAATTATGTAATAGGAATAATTTATACATAACAAAAGAAAATTTAATTACAAACCAAAATATCTATTTAAAAATTTTAAATTATACCTAAGTTAGAAATTAAAGATTTTCGTGATATTTTGATTCTTTTAAATGGAATTATGGATTAAAACATCTCTTTATTCTTTTGTTTCGAAAAATTGTATTATTCTGATTGTAATCACGGTTGTTCGATAAAGTCATAAAAATAATTTAAAAATATTTTTAAATTGAAAATTTATAAACTATGTCTAGATTGTAGGAACTAAATTTGTTATTGAATCAATACAAAATCAATAAACTTAATTAGAGTGTCATAACTGAAAAGTAATTATAAAAGATATCCGTAGTTTATATATATATGCTATTATTAAATCCAAATCTACCAATGATAATGAGGTGACCACATTGGACAATTACATCTTAGTTAGAGAATATAAAAGACCTATATAACAACATAAGTTCATGAATACATAGCTATATGACTACAAAATTACATAAATAGAGAGGAAAATTAGTGAGCAACCCTAATATAACAAAATATACTTTTTTTTTTTCATTAAGAGGTTACAAGTCTTTCTTAATTCTTTAGTAATGATTACAAGTCTTCTCAAAGAAAGTGTATCTGCCCTTACCCACTATTTCCTTTTACAGTGTCGAGCGTTATTTTGCTAAAAACTGCCTTTGAGGCATTGTCTTTACTCTCAAAGGTAATATTCTTTCCAAATATATAGAAGACTCTTCAGAACTCGAGCACGTACTTGTGATGGGTTCGTTCAAAATTTTAGGTACTTAAGGAAGCAAAGAGTTTTCTGGTTGCAAACATTTACAAATATGTTTGTGAAAACGAAAAATATGCAAACATTAGAAAAAGGTAACTTGGCTCCTGCCAATGATTATTACACAATCCTAATAATATGATCTTTTTGATTAGCAAACCAATCTTTCTTAAATATTTAAATTAACTTATTTTGAATAACACTCAAATAACACATTGAATTTCATTATTTCCATTCCAATTACTTGGGTTGTGTACCTGACTTTGGTCCCCTCTAATCTCAGCGAATACGAGAAGCTCGGATCCCACGCCCTAATTGGCCTACCTTCCTCTTATTCCACACGCTTCGTGGAATCTGAATAA

mRNA sequence

ATGATTGAGAGGACATTTTTTGTTTTGATATTTATGTCGAGCGTTATTTTGCTAAAAACTGCCTTTGAGGCATTGTCTTTACTCTCAAAGGTACTTAAGGAAGCAAAGAGTTTTCTGGTTGCAAACATTTACAAATATGTTTGTGAAAACGAAAAATATGCAAACATTAGAAAAAGCGAATACGAGAAGCTCGGATCCCACGCCCTAATTGGCCTACCTTCCTCTTATTCCACACGCTTCGTGGAATCTGAATAA

Coding sequence (CDS)

ATGATTGAGAGGACATTTTTTGTTTTGATATTTATGTCGAGCGTTATTTTGCTAAAAACTGCCTTTGAGGCATTGTCTTTACTCTCAAAGGTACTTAAGGAAGCAAAGAGTTTTCTGGTTGCAAACATTTACAAATATGTTTGTGAAAACGAAAAATATGCAAACATTAGAAAAAGCGAATACGAGAAGCTCGGATCCCACGCCCTAATTGGCCTACCTTCCTCTTATTCCACACGCTTCGTGGAATCTGAATAA

Protein sequence

MIERTFFVLIFMSSVILLKTAFEALSLLSKVLKEAKSFLVANIYKYVCENEKYANIRKSEYEKLGSHALIGLPSSYSTRFVESE

Homology

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BLAST of CsGy5G004320 vs. NCBI nr
Match: XP_008437055.1 (PREDICTED: DNA mismatch repair protein MSH4 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 4.4e-11
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 12  MSSVILLKTAFEALSLLSKVLKEAKSFLVANIYKYVCENEKYANIRK 59
           +SS+ILLKTA EAL LLSK+LKEAKSFL+ANIYK VCENEKYANIRK
Sbjct: 284 ISSIILLKTALEALPLLSKILKEAKSFLLANIYKSVCENEKYANIRK 330

[Close]

BLAST of CsGy5G004320 vs. NCBI nr
Match: KGN50271.1 (hypothetical protein Csa_5G165160 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 12  MSSVILLKTAFEALSLLSKVLKEAKSFLVANIYKYVCENEKYANIRK 59
           +SS+ILLKTA EAL LLSKVLKEAKSFL+ANIYK +CENEKY NIRK
Sbjct: 56  ISSIILLKTALEALPLLSKVLKEAKSFLLANIYKSICENEKYTNIRK 102

[Close]

BLAST of CsGy5G004320 vs. NCBI nr
Match: XP_011656157.1 (PREDICTED: DNA mismatch repair protein MSH4 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 12  MSSVILLKTAFEALSLLSKVLKEAKSFLVANIYKYVCENEKYANIRK 59
           +SS+ILLKTA EAL LLSKVLKEAKSFL+ANIYK +CENEKY NIRK
Sbjct: 284 ISSIILLKTALEALPLLSKVLKEAKSFLLANIYKSICENEKYTNIRK 330

[Close]

BLAST of CsGy5G004320 vs. NCBI nr
Match: XP_021631808.1 (DNA mismatch repair protein MSH4 isoform X5 [Manihot esculenta] >OAY60055.1 hypothetical protein MANES_01G082400 [Manihot esculenta])

HSP 1 Score: 73.9 bits (180), Expect = 2.8e-10
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 10  IFMSSVILLKTAFEALSLLSKVLKEAKSFLVANIYKYVCENEKYANIRK 59
           + +SS+ILLKTA EAL LLSKVLK+AKSFL+ANIYK VCENEKYA+IRK
Sbjct: 285 VLISSIILLKTALEALPLLSKVLKDAKSFLLANIYKTVCENEKYASIRK 333

[Close]

BLAST of CsGy5G004320 vs. NCBI nr
Match: OAY60056.1 (hypothetical protein MANES_01G082400 [Manihot esculenta])

HSP 1 Score: 73.9 bits (180), Expect = 2.8e-10
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 10  IFMSSVILLKTAFEALSLLSKVLKEAKSFLVANIYKYVCENEKYANIRK 59
           + +SS+ILLKTA EAL LLSKVLK+AKSFL+ANIYK VCENEKYA+IRK
Sbjct: 173 VLISSIILLKTALEALPLLSKVLKDAKSFLLANIYKTVCENEKYASIRK 221

[Close]

BLAST of CsGy5G004320 vs. TAIR10
Match: AT4G17380.1 (MUTS-like protein 4)

HSP 1 Score: 66.6 bits (161), Expect = 8.2e-12
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 12  MSSVILLKTAFEALSLLSKVLKEAKSFLVANIYKYVCENEKYANIRKSEYEKLGSHAL 70
           +SS+ILLKTA +AL +L+KVLK+AK FL+AN+YK VCEN++YA+IRK   E +    L
Sbjct: 287 ISSIILLKTALDALPILAKVLKDAKCFLLANVYKSVCENDRYASIRKKIGEVIDDDVL 344

[Close]

BLAST of CsGy5G004320 vs. TAIR10
Match: AT2G43090.1 (Aconitase/3-isopropylmalate dehydratase protein)

HSP 1 Score: 41.2 bits (95), Expect = 3.7e-04
Identity = 17/23 (73.91%), Postives = 21/23 (91.30%), Query Frame = 0


Query: 60  EYEKLGSHALIGLPSSYSTRFVE 83
           EYEKLGS+AL+GLP+SY  RFV+
Sbjct: 101 EYEKLGSYALVGLPASYKERFVQ 123

[Close]

BLAST of CsGy5G004320 vs. Swiss-Prot
Match: sp|F4JP48|MSH4_ARATH (DNA mismatch repair protein MSH4 OS=Arabidopsis thaliana OX=3702 GN=MSH4 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-10
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 12  MSSVILLKTAFEALSLLSKVLKEAKSFLVANIYKYVCENEKYANIRKSEYEKLGSHAL 70
           +SS+ILLKTA +AL +L+KVLK+AK FL+AN+YK VCEN++YA+IRK   E +    L
Sbjct: 287 ISSIILLKTALDALPILAKVLKDAKCFLLANVYKSVCENDRYASIRKKIGEVIDDDVL 344

[Close]

BLAST of CsGy5G004320 vs. TrEMBL
Match: tr|A0A1S3ATN6|A0A1S3ATN6_CUCME (DNA mismatch repair protein MSH4 OS=Cucumis melo OX=3656 GN=LOC103482597 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-11
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 12  MSSVILLKTAFEALSLLSKVLKEAKSFLVANIYKYVCENEKYANIRK 59
           +SS+ILLKTA EAL LLSK+LKEAKSFL+ANIYK VCENEKYANIRK
Sbjct: 284 ISSIILLKTALEALPLLSKILKEAKSFLLANIYKSVCENEKYANIRK 330

[Close]

BLAST of CsGy5G004320 vs. TrEMBL
Match: tr|A0A0A0KRC1|A0A0A0KRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G165160 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.4e-11
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 12  MSSVILLKTAFEALSLLSKVLKEAKSFLVANIYKYVCENEKYANIRK 59
           +SS+ILLKTA EAL LLSKVLKEAKSFL+ANIYK +CENEKY NIRK
Sbjct: 56  ISSIILLKTALEALPLLSKVLKEAKSFLLANIYKSICENEKYTNIRK 102

[Close]

BLAST of CsGy5G004320 vs. TrEMBL
Match: tr|A0A2C9WLG3|A0A2C9WLG3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G082400 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 10  IFMSSVILLKTAFEALSLLSKVLKEAKSFLVANIYKYVCENEKYANIRK 59
           + +SS+ILLKTA EAL LLSKVLK+AKSFL+ANIYK VCENEKYA+IRK
Sbjct: 285 VLISSIILLKTALEALPLLSKVLKDAKSFLLANIYKTVCENEKYASIRK 333

[Close]

BLAST of CsGy5G004320 vs. TrEMBL
Match: tr|A0A2C9WKC0|A0A2C9WKC0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G082400 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 10  IFMSSVILLKTAFEALSLLSKVLKEAKSFLVANIYKYVCENEKYANIRK 59
           + +SS+ILLKTA EAL LLSKVLK+AKSFL+ANIYK VCENEKYA+IRK
Sbjct: 173 VLISSIILLKTALEALPLLSKVLKDAKSFLLANIYKTVCENEKYASIRK 221

[Close]

BLAST of CsGy5G004320 vs. TrEMBL
Match: tr|A0A1R3G349|A0A1R3G349_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_37144 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.2e-10
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 10  IFMSSVILLKTAFEALSLLSKVLKEAKSFLVANIYKYVCENEKYANIRK 59
           I +SS+ILLKTA +AL LLSKVLK+AKSFL+ANIYK +CENEKYA+IRK
Sbjct: 295 ILISSIILLKTALDALPLLSKVLKDAKSFLLANIYKSICENEKYADIRK 343

The following BLAST results are available for this feature:

BLAST of CsGy5G004320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437055.1	4.4e-11	85.11	PREDICTED: DNA mismatch repair protein MSH4 [Cucumis melo]	[more]
KGN50271.1	1.3e-10	82.98	hypothetical protein Csa_5G165160 [Cucumis sativus]	[more]
XP_011656157.1	1.3e-10	82.98	PREDICTED: DNA mismatch repair protein MSH4 [Cucumis sativus]	[more]
XP_021631808.1	2.8e-10	79.59	DNA mismatch repair protein MSH4 isoform X5 [Manihot esculenta] >OAY60055.1 hypo...	[more]
OAY60056.1	2.8e-10	79.59	hypothetical protein MANES_01G082400 [Manihot esculenta]	[more]

BLAST of CsGy5G004320 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17380.1	8.2e-12	58.62	MUTS-like protein 4	[more]
AT2G43090.1	3.7e-04	73.91	Aconitase/3-isopropylmalate dehydratase protein	[more]

BLAST of CsGy5G004320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4JP48\|MSH4_ARATH	1.5e-10	58.62	DNA mismatch repair protein MSH4 OS=Arabidopsis thaliana OX=3702 GN=MSH4 PE=2 SV...	[more]

BLAST of CsGy5G004320 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3ATN6\|A0A1S3ATN6_CUCME	2.9e-11	85.11	DNA mismatch repair protein MSH4 OS=Cucumis melo OX=3656 GN=LOC103482597 PE=4 SV...	[more]
tr\|A0A0A0KRC1\|A0A0A0KRC1_CUCSA	8.4e-11	82.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G165160 PE=4 SV=1	[more]
tr\|A0A2C9WLG3\|A0A2C9WLG3_MANES	1.9e-10	79.59	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G082400 PE=4 SV=...	[more]
tr\|A0A2C9WKC0\|A0A2C9WKC0_MANES	1.9e-10	79.59	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G082400 PE=4 SV=...	[more]
tr\|A0A1R3G349\|A0A1R3G349_9ROSI	4.2e-10	77.55	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_37144 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006298	mismatch repair
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030983	mismatched DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G004320.1	CsGy5G004320.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G004320	MELO3C005519.2	Melon (DHL92) v3.6.1	cgybmedB298
CsGy5G004320	Cla97C01G004360	Watermelon (97103) v2	cgybwmbB319
CsGy5G004320	Bhi12G000434	Wax gourd	cgybwgoB414
CsGy5G004320	Carg02457	Silver-seed gourd	carcgybB0911

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G004320	Cucurbita maxima (Rimu)	cgybcmaB608
CsGy5G004320	Cucurbita maxima (Rimu)	cgybcmaB637
CsGy5G004320	Cucurbita maxima (Rimu)	cgybcmaB640
CsGy5G004320	Cucurbita maxima (Rimu)	cgybcmaB695
CsGy5G004320	Cucurbita moschata (Rifu)	cgybcmoB583
CsGy5G004320	Cucurbita moschata (Rifu)	cgybcmoB619
CsGy5G004320	Cucurbita moschata (Rifu)	cgybcmoB675
CsGy5G004320	Cucurbita pepo (Zucchini)	cgybcpeB597
CsGy5G004320	Cucurbita pepo (Zucchini)	cgybcpeB687
CsGy5G004320	Cucurbita pepo (Zucchini)	cgybcpeB693
CsGy5G004320	Cucurbita pepo (Zucchini)	cgybcpeB702
CsGy5G004320	Cucumber (Chinese Long) v2	cgybcuB211
CsGy5G004320	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G004320	Bottle gourd (USVL1VR-Ls)	cgyblsiB294
CsGy5G004320	Bottle gourd (USVL1VR-Ls)	cgyblsiB352
CsGy5G004320	Melon (DHL92) v3.5.1	cgybmeB298
CsGy5G004320	Melon (DHL92) v3.5.1	cgybmeB348
CsGy5G004320	Watermelon (Charleston Gray)	cgybwcgB332
CsGy5G004320	Watermelon (97103) v1	cgybwmB348
CsGy5G004320	Wild cucumber (PI 183967)	cgybcpiB212
CsGy5G004320	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G004320	Silver-seed gourd	carcgybB0549
CsGy5G004320	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G004320	Cucumber (Gy14) v2	cgybcgybB090