CsGy5G003410 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G003410
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr5 : 2224733 .. 2226906 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGAAGTAGGTTTCATAACTTCCTTAGGTGAGCTTTACAGAGATTGGACTTCTCACTATGTGTTTATTAGAAACCCATATGAGATACCCTTCACTGAATTCACTTCTTGTTCTAACAAAGTCGATCCGGCTGAAAGTTACAGAATATGTCAATTTTTCATTCAACTTTGAGAACTTCAAATTTCTTGGTGTAACTCTCACTGAAACTCCAGCTGGTGCCTTAACAATGGCGTAATAAACTGAATTAGCATCACCCACATTTGTCACTGTTCTATTAAACGCCTGTGAATCAGCTCCCAAACTCACAGCAAACGAAGGATAATTCAGATCGCCTTCTCGTATTCTTGATACCGTCGAACACGTTACTTGTCTACGAACAATAATCGACACTTGAGCATCTGTGTACAAATGGCAAAGATAAGGAACATAATCATCGGGCTGAATGTCATAAACCAATCCTGGGTTAGCTGCTTTTGATGGATTAACATGTCCGGACCCCATAGCGAAAAAGTTCGCTGGTTTCAAATCTTGATCCACGATTGGTTTCCCTTGAGGATTTCTTACATCTGCAGAGGTCATAATAGCAGATTTAATGGCAGCAGGGGACCAATTAGGATGATTACTCTTGATCAAAGCTGCAATTCCACTTAAATGAGGACAAGACATTGATGTTCCTGATATAACATTAAAAGTCGATTTTGTGTTCGTGTTTGTGTTGTTGTTTAATGGGAATGGCCAAGCTGCGAGAATGTTGACACCAGGGCCTGTTATGTCAGGTTTCAAGATCCCAGGGCTTGCTTGACATGGCCCTCGTGAAGAAAAAGAAGCCATAGCAGGGGAGAAAGTGGTGGCTCTGTTTCCAAGCAGAGTTCCTTCAAATGAAATTGAAGCTTTTGGATTATGTGATGAATTTATATATTCTTTGATTTTAAGTCCATCTTCATAGCTTAAATGGGTTGTTGGAAGAACATGAGCTTCAGCTAAAGTACTAAACCCATCTGGTTTTTGGTTTACAAGAATCATGGCAGCGCCGCCACCATTTTTCACAACCAACCCTTTTGCTATTCTGCCTATTCCTCCTCCTCGTTCACATACCACGATTTTTCCTGTCACATTCAGCTTTTCAAGTGAACCTTCAACACAATATTCAGAACCTTCGATTCCGCTTTTGCCAGCGTATACAAGTGGTAAGAATTTTGATGAGAAATCTCTTGGCTGGAACAGAGATTCACCGGTAAAGACTTTGCCACTTTCAAGCTTTGCCAATGCCACGATTTTTCTATCAATGGTGCTAGCTCCAACAGTTAAAATCCATGGTGCTTCGTTGGCTAATGTATTTTTGGAAGGGCCTGAATTCCCTGCTGAACAACTCACAAAAATTCCCTTTTTAATGGCTGCAAATGCCCCTACGGCAATTGTGTCTTTGAAAAATGGAGTCGAAGGGGCACCGAGGGAGAGCGAGAGCACGTCAACACCGTCGTCGATTGCAGCATCTAAGGCAGCAAGTATATCACTACTGGAACAACCTTTTGGAGAACAAACTTTGTACACTGCAATATGAGCTAAAGGTGCCATTCCAACTGCTTTGCCTCTTGCATTTCCCAAAGCTTCAGCACCTTTAACAAAAGTGCCTGCAGCTGTGCTTGCTGTGTGTGTGCCATGTCCATTTTCGTCATTTGGTGATTTCCCAATCGAAACATTATTAGCAAGATTGAAAGTTCTTGCACCAATCAACTTGTTGTTACAAATAGAAGCACCAAATTCGCATCTCCCTTTCCATTTCGCCGGTGGTGACGGCATTCCTTCATCGTTAAACGAAGGATGATTTGGATGAATTCCAGTATCCAATACTCCTATGATCACTCCTTTACCAAAGTTTGAATTTTTCCATAACCCAAAATGTTGGTTCAACCCCAAATATTCAGGTGTGTGAGTTGTGTGCAAATTCAATGTGGTTTCAGGCATGGCTGAGATGAAACCATCCTTCTCTTCCATTGTTTTAACTTGTTCTTTTGTAAGTCTTGCAGAGAAACCACTGATCACGTGTCGATATGAATAAAGTAACCGTGATTGTTCGTTGGATGACGCTTCGATCGTTTCTGGTAAGAATGATGTGTACCAATTTTGTAGATCAATGGTGTCACCCAAAATCTCAACCTCTGGTTGCTTAA

mRNA sequence

ATGTATGAAGTAGGGCCTGAATTCCCTGCTGAACAACTCACAAAAATTCCCTTTTTAATGGCTGCAAATGCCCCTACGGCAATTGTGTCTTTGAAAAATGGAGTCGAAGGGGCACCGAGGGAGAGCGAGAGCACGTCAACACCGTCGTCGATTGCAGCATCTAAGGCAGCAAATCAATGGTGTCACCCAAAATCTCAACCTCTGGTTGCTTAA

Coding sequence (CDS)

ATGTATGAAGTAGGGCCTGAATTCCCTGCTGAACAACTCACAAAAATTCCCTTTTTAATGGCTGCAAATGCCCCTACGGCAATTGTGTCTTTGAAAAATGGAGTCGAAGGGGCACCGAGGGAGAGCGAGAGCACGTCAACACCGTCGTCGATTGCAGCATCTAAGGCAGCAAATCAATGGTGTCACCCAAAATCTCAACCTCTGGTTGCTTAA

Protein sequence

MYEVGPEFPAEQLTKIPFLMAANAPTAIVSLKNGVEGAPRESESTSTPSSIAASKAANQWCHPKSQPLVA

Homology

[Close]

BLAST of CsGy5G003410 vs. NCBI nr
Match: KHG16057.1 (hypothetical protein F383_20744 [Gossypium arboreum])

HSP 1 Score: 78.6 bits (192), Expect = 9.6e-12
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 5  GPEFPAEQLTKIPFLMAANAPTAIVSLKNGVEGAPRESESTSTPSSIAASKAANQWCHPK 64
          GPEFPAEQLT IPF +AAN P A++S K G   +PRESESTSTPSSIAAS AA++   P 
Sbjct: 21 GPEFPAEQLTNIPFFIAANPPMAMLSWKKGTASSPRESESTSTPSSIAASNAASEQVVPS 80

Query: 65 SQP 68
           +P
Sbjct: 81 LRP 83

[Close]

BLAST of CsGy5G003410 vs. NCBI nr
Match: GAY54908.1 (hypothetical protein CUMW_160400 [Citrus unshiu])

HSP 1 Score: 59.3 bits (142), Expect = 6.0e-06
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 2   YEVGPEFPAEQLTKIPFLMAANAPTAIVSLKNGVEGAPRESESTSTPSSIA 53
           Y  GPEFPAEQ TKIPF  AA AP AI    N V G PR+++ TSTPS++A
Sbjct: 302 YGRGPEFPAEQATKIPFFNAAKAPMAIGFSSNVVSGKPRDNDMTSTPSAMA 352

[Close]

BLAST of CsGy5G003410 vs. TrEMBL
Match: tr|A0A0B0NTS5|A0A0B0NTS5_GOSAR (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_20744 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.3e-12
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 5  GPEFPAEQLTKIPFLMAANAPTAIVSLKNGVEGAPRESESTSTPSSIAASKAANQWCHPK 64
          GPEFPAEQLT IPF +AAN P A++S K G   +PRESESTSTPSSIAAS AA++   P 
Sbjct: 21 GPEFPAEQLTNIPFFIAANPPMAMLSWKKGTASSPRESESTSTPSSIAASNAASEQVVPS 80

Query: 65 SQP 68
           +P
Sbjct: 81 LRP 83

[Close]

BLAST of CsGy5G003410 vs. TrEMBL
Match: tr|A0A2H5PRB8|A0A2H5PRB8_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_160400 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.0e-06
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 2   YEVGPEFPAEQLTKIPFLMAANAPTAIVSLKNGVEGAPRESESTSTPSSIA 53
           Y  GPEFPAEQ TKIPF  AA AP AI    N V G PR+++ TSTPS++A
Sbjct: 302 YGRGPEFPAEQATKIPFFNAAKAPMAIGFSSNVVSGKPRDNDMTSTPSAMA 352

The following BLAST results are available for this feature:

BLAST of CsGy5G003410 vs. NCBI nr


Match Name	E-value	Identity	Description
KHG16057.1	9.6e-12	65.08	hypothetical protein F383_20744 [Gossypium arboreum]	[more]
GAY54908.1	6.0e-06	60.78	hypothetical protein CUMW_160400 [Citrus unshiu]	[more]

BLAST of CsGy5G003410 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G003410 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G003410 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0B0NTS5\|A0A0B0NTS5_GOSAR	6.3e-12	65.08	Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_20744 PE=4 SV=1	[more]
tr\|A0A2H5PRB8\|A0A2H5PRB8_CITUN	4.0e-06	60.78	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_160400 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G003410.1	CsGy5G003410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..70

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G003410	Cucumber (Gy14) v2	cgybcgybB086
CsGy5G003410	Cucumber (Gy14) v2	cgybcgybB090
CsGy5G003410	Cucumber (Gy14) v2	cgybcgybB091
CsGy5G003410	Cucurbita maxima (Rimu)	cgybcmaB608
CsGy5G003410	Cucurbita maxima (Rimu)	cgybcmaB630
CsGy5G003410	Cucurbita maxima (Rimu)	cgybcmaB635
CsGy5G003410	Cucurbita maxima (Rimu)	cgybcmaB695
CsGy5G003410	Cucurbita maxima (Rimu)	cgybcmaB696
CsGy5G003410	Cucurbita moschata (Rifu)	cgybcmoB571
CsGy5G003410	Cucurbita moschata (Rifu)	cgybcmoB583
CsGy5G003410	Cucurbita moschata (Rifu)	cgybcmoB606
CsGy5G003410	Cucurbita moschata (Rifu)	cgybcmoB613
CsGy5G003410	Cucurbita moschata (Rifu)	cgybcmoB675
CsGy5G003410	Cucurbita moschata (Rifu)	cgybcmoB676
CsGy5G003410	Cucurbita pepo (Zucchini)	cgybcpeB584
CsGy5G003410	Cucurbita pepo (Zucchini)	cgybcpeB597
CsGy5G003410	Cucurbita pepo (Zucchini)	cgybcpeB679
CsGy5G003410	Cucurbita pepo (Zucchini)	cgybcpeB702
CsGy5G003410	Cucurbita pepo (Zucchini)	cgybcpeB703
CsGy5G003410	Cucumber (Chinese Long) v2	cgybcuB207
CsGy5G003410	Cucumber (Chinese Long) v2	cgybcuB211
CsGy5G003410	Cucumber (Chinese Long) v2	cgybcuB213
CsGy5G003410	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G003410	Bottle gourd (USVL1VR-Ls)	cgyblsiB294
CsGy5G003410	Bottle gourd (USVL1VR-Ls)	cgyblsiB342
CsGy5G003410	Bottle gourd (USVL1VR-Ls)	cgyblsiB344
CsGy5G003410	Bottle gourd (USVL1VR-Ls)	cgyblsiB352
CsGy5G003410	Melon (DHL92) v3.5.1	cgybmeB298
CsGy5G003410	Melon (DHL92) v3.5.1	cgybmeB348
CsGy5G003410	Melon (DHL92) v3.5.1	cgybmeB352
CsGy5G003410	Melon (DHL92) v3.5.1	cgybmeB353
CsGy5G003410	Melon (DHL92) v3.6.1	cgybmedB298
CsGy5G003410	Melon (DHL92) v3.6.1	cgybmedB352
CsGy5G003410	Melon (DHL92) v3.6.1	cgybmedB353
CsGy5G003410	Melon (DHL92) v3.6.1	cgybmedB354
CsGy5G003410	Watermelon (Charleston Gray)	cgybwcgB326
CsGy5G003410	Watermelon (Charleston Gray)	cgybwcgB332
CsGy5G003410	Watermelon (Charleston Gray)	cgybwcgB360
CsGy5G003410	Watermelon (97103) v1	cgybwmB381
CsGy5G003410	Watermelon (97103) v1	cgybwmB378
CsGy5G003410	Wild cucumber (PI 183967)	cgybcpiB209
CsGy5G003410	Wild cucumber (PI 183967)	cgybcpiB212
CsGy5G003410	Wild cucumber (PI 183967)	cgybcpiB213
CsGy5G003410	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G003410	Silver-seed gourd	carcgybB0496
CsGy5G003410	Silver-seed gourd	carcgybB0618
CsGy5G003410	Silver-seed gourd	carcgybB0856
CsGy5G003410	Silver-seed gourd	carcgybB0927
CsGy5G003410	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G003410	Cucumber (Chinese Long) v3	cgybcucB210
CsGy5G003410	Cucumber (Chinese Long) v3	cgybcucB216
CsGy5G003410	Cucumber (Chinese Long) v3	cgybcucB217
CsGy5G003410	Watermelon (97103) v2	cgybwmbB319
CsGy5G003410	Watermelon (97103) v2	cgybwmbB339
CsGy5G003410	Watermelon (97103) v2	cgybwmbB362
CsGy5G003410	Watermelon (97103) v2	cgybwmbB367
CsGy5G003410	Wax gourd	cgybwgoB414
CsGy5G003410	Wax gourd	cgybwgoB460