CsGy5G002800 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G002800
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	serine racemase
Location	Chr5 : 1838606 .. 1839354 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGTGGAGGGTCAAAATAAGAAGAAAGAGTATGCTGCCGATATTTCCTCCATAAAAGAAGCCCGGATACGTATTCGACCTTTCATCCATCAAACCCAAGTTTTTGCATCTGAAACTATCAATGCTGCTTCAGGAAAACAATTTTTCTTCAAATGTGAATGTTTCCAGAAGGGGTGAGTAGCTTAACCAACGTTGAAAGATTATAAGGTTCTGATTCAAATGGTGTGTGGTCTTTTTAATGCTGACATGCACAGTAACATTTAAACTTATTTTCAGTTTCAACGTAGCTGACTCCTGAAATTTATTATGAAATGTGTTATCTTGTTGCTAAGTCAAAAGCCATCTTTTAAAGATATATTAGTTCTAAATCATCTCTCTTAGATTATTATTTAATAGTTAATACGTACAATGTAAATTTGGTCATTTCAAAGTTTGTATGAAAAGCTCTTCTTGACATGTTGCTGTTGGTACTTTTGCTAAGAGTACTCTTTGTGAAGTGAAGTCAAGGATAAGTTGAAAATGTCTATGAGCTATTTTATGTCAGAATCTTAAGCTAGGAGAGACAATTATGGTTTCTAATGGAAATCTAATGGTTTATTATTTGGCTATAATTCAGTGGAGCTTTTAAATTCAGAGGTGCCTGCAATGCTATATATTCACTTGATGAGGGCGAGGCTGCTAAAGGGGTTGTGACACATAGCAGGTCCACTCTGGACTACACAATATACTTCTTTGAAGCTTTTTGA

mRNA sequence

ATGAACGTGGAGGGTCAAAATAAGAAGAAAGAGTATGCTGCCGATATTTCCTCCATAAAAGAAGCCCGGATACGTATTCGACCTTTCATCCATCAAACCCAAGTTTTTGCATCTGAAACTATCAATGCTGCTTCAGGAAAACAATTTTTCTTCAAATGTGAATGTTTCCAGAAGGGTGGAGCTTTTAAATTCAGAGGTGCCTGCAATGCTATATATTCACTTGATGAGGGCGAGGCTGCTAAAGGGGTTGTGACACATAGCAGGTCCACTCTGGACTACACAATATACTTCTTTGAAGCTTTTTGA

Coding sequence (CDS)

ATGAACGTGGAGGGTCAAAATAAGAAGAAAGAGTATGCTGCCGATATTTCCTCCATAAAAGAAGCCCGGATACGTATTCGACCTTTCATCCATCAAACCCAAGTTTTTGCATCTGAAACTATCAATGCTGCTTCAGGAAAACAATTTTTCTTCAAATGTGAATGTTTCCAGAAGGGTGGAGCTTTTAAATTCAGAGGTGCCTGCAATGCTATATATTCACTTGATGAGGGCGAGGCTGCTAAAGGGGTTGTGACACATAGCAGGTCCACTCTGGACTACACAATATACTTCTTTGAAGCTTTTTGA

Protein sequence

MNVEGQNKKKEYAADISSIKEARIRIRPFIHQTQVFASETINAASGKQFFFKCECFQKGGAFKFRGACNAIYSLDEGEAAKGVVTHSRSTLDYTIYFFEAF

Homology

[Close]

BLAST of CsGy5G002800 vs. NCBI nr
Match: XP_011654760.1 (PREDICTED: serine racemase-like [Cucumis sativus] >XP_011654761.1 PREDICTED: serine racemase-like [Cucumis sativus] >KGN50113.1 hypothetical protein Csa_5G154750 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 4.6e-39
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MNVEGQNKKKEYAADISSIKEARIRIRPFIHQTQVFASETINAASGKQFFFKCECFQKGG 60
          MNVE QNKKKEYAADISSIKEARIRIRPFIHQT VF+SETINAASGKQ FFKCECFQKGG
Sbjct: 1  MNVESQNKKKEYAADISSIKEARIRIRPFIHQTPVFSSETINAASGKQLFFKCECFQKGG 60

Query: 61 AFKFRGACNAIYSLDEGEAAKGVVTHS 88
          AFKFRGACNAIYSLDEGEAAKGVVTHS
Sbjct: 61 AFKFRGACNAIYSLDEGEAAKGVVTHS 87

[Close]

BLAST of CsGy5G002800 vs. NCBI nr
Match: XP_008437249.1 (PREDICTED: serine racemase [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 4.3e-37
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MNVEGQNKKKEYAADISSIKEARIRIRPFIHQTQVFASETINAASGKQFFFKCECFQKGG 60
          MN E QNKKKEYAADISSIKEARIRIRPFIH+T VF+SETINAASGK+ FFKCECFQKGG
Sbjct: 1  MNAESQNKKKEYAADISSIKEARIRIRPFIHETPVFSSETINAASGKRLFFKCECFQKGG 60

Query: 61 AFKFRGACNAIYSLDEGEAAKGVVTHS 88
          AFK RGACNAIYSLDEGEAAKGVVTHS
Sbjct: 61 AFKIRGACNAIYSLDEGEAAKGVVTHS 87

[Close]

BLAST of CsGy5G002800 vs. NCBI nr
Match: XP_022155519.1 (serine racemase [Momordica charantia])

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-34
Identity = 75/87 (86.21%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1  MNVEGQNKKKEYAADISSIKEARIRIRPFIHQTQVFASETINAASGKQFFFKCECFQKGG 60
          MNVE  +KKKEYAADISSIKEAR+RI PFIHQT V  SE+INAASGKQ FFKCECFQKGG
Sbjct: 1  MNVESHDKKKEYAADISSIKEARLRIEPFIHQTPVLTSESINAASGKQLFFKCECFQKGG 60

Query: 61 AFKFRGACNAIYSLDEGEAAKGVVTHS 88
          AFKFRGACNAIYSLD+ EAAKGVVTHS
Sbjct: 61 AFKFRGACNAIYSLDDDEAAKGVVTHS 87

[Close]

BLAST of CsGy5G002800 vs. NCBI nr
Match: XP_022957814.1 (serine racemase [Cucurbita moschata] >XP_022957815.1 serine racemase [Cucurbita moschata] >XP_022957816.1 serine racemase [Cucurbita moschata])

HSP 1 Score: 149.1 bits (375), Expect = 8.3e-33
Identity = 71/87 (81.61%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MNVEGQNKKKEYAADISSIKEARIRIRPFIHQTQVFASETINAASGKQFFFKCECFQKGG 60
          MNVE  N+KKEYAAD+SSI+EARIRI+PF HQT V  SE+INAASGKQ FFKCECFQKGG
Sbjct: 1  MNVESPNEKKEYAADLSSIQEARIRIQPFAHQTPVLTSESINAASGKQLFFKCECFQKGG 60

Query: 61 AFKFRGACNAIYSLDEGEAAKGVVTHS 88
           FKFRGACNAIYSLD+ +AAKGVVTHS
Sbjct: 61 TFKFRGACNAIYSLDDEQAAKGVVTHS 87

[Close]

BLAST of CsGy5G002800 vs. NCBI nr
Match: XP_023532555.1 (serine racemase [Cucurbita pepo subsp. pepo] >XP_023532556.1 serine racemase [Cucurbita pepo subsp. pepo] >XP_023532557.1 serine racemase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.1 bits (375), Expect = 8.3e-33
Identity = 71/87 (81.61%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1  MNVEGQNKKKEYAADISSIKEARIRIRPFIHQTQVFASETINAASGKQFFFKCECFQKGG 60
          MNVE  N+KK+YAAD+SSI+EARIRI+PF HQT V  SE+INAASGKQ FFKCECFQKGG
Sbjct: 1  MNVESPNEKKKYAADLSSIEEARIRIQPFAHQTPVLTSESINAASGKQLFFKCECFQKGG 60

Query: 61 AFKFRGACNAIYSLDEGEAAKGVVTHS 88
          AFKFRGACNAIYSLD+ +AAKGVVTHS
Sbjct: 61 AFKFRGACNAIYSLDDEQAAKGVVTHS 87

[Close]

BLAST of CsGy5G002800 vs. TAIR10
Match: AT4G11640.1 (serine racemase)

HSP 1 Score: 117.9 bits (294), Expect = 3.7e-27
Identity = 54/79 (68.35%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 9  KKEYAADISSIKEARIRIRPFIHQTQVFASETINAASGKQFFFKCECFQKGGAFKFRGAC 68
          +++YAADI SIKEA  RI+P+IH+T V  SE++N+ SG+  FFKCEC QKGGAFKFRGAC
Sbjct: 5  REKYAADILSIKEAHDRIKPYIHRTPVLTSESLNSISGRSLFFKCECLQKGGAFKFRGAC 64

Query: 69 NAIYSLDEGEAAKGVVTHS 88
          NA+ SLD  +AAKGVVTHS
Sbjct: 65 NAVLSLDAEQAAKGVVTHS 83

[Close]

BLAST of CsGy5G002800 vs. Swiss-Prot
Match: sp|Q2PGG3|SRR_ARATH (Serine racemase OS=Arabidopsis thaliana OX=3702 GN=SR PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.7e-26
Identity = 54/79 (68.35%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 9  KKEYAADISSIKEARIRIRPFIHQTQVFASETINAASGKQFFFKCECFQKGGAFKFRGAC 68
          +++YAADI SIKEA  RI+P+IH+T V  SE++N+ SG+  FFKCEC QKGGAFKFRGAC
Sbjct: 5  REKYAADILSIKEAHDRIKPYIHRTPVLTSESLNSISGRSLFFKCECLQKGGAFKFRGAC 64

Query: 69 NAIYSLDEGEAAKGVVTHS 88
          NA+ SLD  +AAKGVVTHS
Sbjct: 65 NAVLSLDAEQAAKGVVTHS 83

[Close]

BLAST of CsGy5G002800 vs. Swiss-Prot
Match: sp|A2XWA9|SRR_ORYSI (Serine racemase OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16936 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-23
Identity = 50/76 (65.79%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 12 YAADISSIKEARIRIRPFIHQTQVFASETINAASGKQFFFKCECFQKGGAFKFRGACNAI 71
          YAADI SI+EA+ RI P++H+T V +S +I+A  GKQ FFKCECFQK GAFK RGA N+I
Sbjct: 17 YAADIHSIREAQARIAPYVHKTPVLSSTSIDAIVGKQLFFKCECFQKAGAFKIRGASNSI 76

Query: 72 YSLDEGEAAKGVVTHS 88
          ++LD+ EA+KGVVTHS
Sbjct: 77 FALDDDEASKGVVTHS 92

[Close]

BLAST of CsGy5G002800 vs. Swiss-Prot
Match: sp|Q7XSN8|SRR_ORYSJ (Serine racemase OS=Oryza sativa subsp. japonica OX=39947 GN=SERR PE=1 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-23
Identity = 50/76 (65.79%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 12 YAADISSIKEARIRIRPFIHQTQVFASETINAASGKQFFFKCECFQKGGAFKFRGACNAI 71
          YAADI SI+EA+ RI P++H+T V +S +I+A  GKQ FFKCECFQK GAFK RGA N+I
Sbjct: 17 YAADIHSIREAQARIAPYVHKTPVLSSTSIDAIVGKQLFFKCECFQKAGAFKIRGASNSI 76

Query: 72 YSLDEGEAAKGVVTHS 88
          ++LD+ EA+KGVVTHS
Sbjct: 77 FALDDDEASKGVVTHS 92

[Close]

BLAST of CsGy5G002800 vs. Swiss-Prot
Match: sp|Q54HH2|SRR_DICDI (Probable serine racemase OS=Dictyostelium discoideum OX=44689 GN=srr PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-18
Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 16 ISSIKEARIRIRPFIHQTQVFASETINAASGKQFFFKCECFQKGGAFKFRGACNAIYSLD 75
          +  IKEA  RI  +IH+T V  + TIN  +GK+ +FKCE  QK G+FK RGACNAI+SLD
Sbjct: 9  LKDIKEAHKRIEKYIHKTPVLTNSTINELAGKELYFKCENLQKTGSFKMRGACNAIFSLD 68

Query: 76 EGEAAKGVVTHS 88
          E E +KGVVTHS
Sbjct: 69 EEELSKGVVTHS 80

[Close]

BLAST of CsGy5G002800 vs. Swiss-Prot
Match: sp|A0JNI4|SRR_BOVIN (Serine racemase OS=Bos taurus OX=9913 GN=SRR PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.4e-12
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 11 EYAADISSIKEARIRIRPFIHQTQVFASETINAASGKQFFFKCECFQKGGAFKFRGACNA 70
          +Y    + +++A I IR FIH T V  S  +N  +G+  FFKCE FQK G+FK RGA NA
Sbjct: 4  QYCISFADVEKAHINIRDFIHLTPVLTSSILNQITGRNLFFKCELFQKTGSFKIRGALNA 63

Query: 71 IYSLDEG---EAAKGVVTHS 88
          I  L      E  + VV HS
Sbjct: 64 IRGLISAHPEEKPRAVVAHS 83

[Close]

BLAST of CsGy5G002800 vs. TrEMBL
Match: tr|A0A0A0KKK3|A0A0A0KKK3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154750 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.0e-39
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MNVEGQNKKKEYAADISSIKEARIRIRPFIHQTQVFASETINAASGKQFFFKCECFQKGG 60
          MNVE QNKKKEYAADISSIKEARIRIRPFIHQT VF+SETINAASGKQ FFKCECFQKGG
Sbjct: 1  MNVESQNKKKEYAADISSIKEARIRIRPFIHQTPVFSSETINAASGKQLFFKCECFQKGG 60

Query: 61 AFKFRGACNAIYSLDEGEAAKGVVTHS 88
          AFKFRGACNAIYSLDEGEAAKGVVTHS
Sbjct: 61 AFKFRGACNAIYSLDEGEAAKGVVTHS 87

[Close]

BLAST of CsGy5G002800 vs. TrEMBL
Match: tr|A0A1S3AU40|A0A1S3AU40_CUCME (serine racemase OS=Cucumis melo OX=3656 GN=LOC103482734 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.8e-37
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MNVEGQNKKKEYAADISSIKEARIRIRPFIHQTQVFASETINAASGKQFFFKCECFQKGG 60
          MN E QNKKKEYAADISSIKEARIRIRPFIH+T VF+SETINAASGK+ FFKCECFQKGG
Sbjct: 1  MNAESQNKKKEYAADISSIKEARIRIRPFIHETPVFSSETINAASGKRLFFKCECFQKGG 60

Query: 61 AFKFRGACNAIYSLDEGEAAKGVVTHS 88
          AFK RGACNAIYSLDEGEAAKGVVTHS
Sbjct: 61 AFKIRGACNAIYSLDEGEAAKGVVTHS 87

[Close]

BLAST of CsGy5G002800 vs. TrEMBL
Match: tr|A0A2P6P735|A0A2P6P735_ROSCH (Putative ammonia-lyase, Serine racemase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0198231 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-28
Identity = 62/87 (71.26%), Postives = 75/87 (86.21%), Query Frame = 0


Query: 1   MNVEGQNKKKEYAADISSIKEARIRIRPFIHQTQVFASETINAASGKQFFFKCECFQKGG 60
           M  E Q ++ +YAADISSIKEA+ RI+PFIH+T V +SET+N  SG+Q FFKCECFQKGG
Sbjct: 30  MEAESQMREIKYAADISSIKEAQARIKPFIHETPVLSSETLNLLSGRQLFFKCECFQKGG 89

Query: 61  AFKFRGACNAIYSLDEGEAAKGVVTHS 88
           AFKFRGACNA++SLD+ +AAKGVVTHS
Sbjct: 90  AFKFRGACNAVFSLDDDQAAKGVVTHS 116

[Close]

BLAST of CsGy5G002800 vs. TrEMBL
Match: tr|A0A251P646|A0A251P646_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G097600 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 4.1e-28
Identity = 60/87 (68.97%), Postives = 75/87 (86.21%), Query Frame = 0


Query: 1  MNVEGQNKKKEYAADISSIKEARIRIRPFIHQTQVFASETINAASGKQFFFKCECFQKGG 60
          M  E Q ++ +YAADISSI+EA+ RI+PFIHQT V +SE++NA +G+Q FFKCECFQKGG
Sbjct: 1  MEAESQMREVKYAADISSIREAQARIKPFIHQTPVLSSESLNALAGRQLFFKCECFQKGG 60

Query: 61 AFKFRGACNAIYSLDEGEAAKGVVTHS 88
          AFKFRGACNA++SLD+ +A KGVVTHS
Sbjct: 61 AFKFRGACNAVFSLDDDQAVKGVVTHS 87

[Close]

BLAST of CsGy5G002800 vs. TrEMBL
Match: tr|A0A251P639|A0A251P639_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G097600 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 4.1e-28
Identity = 60/87 (68.97%), Postives = 75/87 (86.21%), Query Frame = 0


Query: 1  MNVEGQNKKKEYAADISSIKEARIRIRPFIHQTQVFASETINAASGKQFFFKCECFQKGG 60
          M  E Q ++ +YAADISSI+EA+ RI+PFIHQT V +SE++NA +G+Q FFKCECFQKGG
Sbjct: 1  MEAESQMREVKYAADISSIREAQARIKPFIHQTPVLSSESLNALAGRQLFFKCECFQKGG 60

Query: 61 AFKFRGACNAIYSLDEGEAAKGVVTHS 88
          AFKFRGACNA++SLD+ +A KGVVTHS
Sbjct: 61 AFKFRGACNAVFSLDDDQAVKGVVTHS 87

The following BLAST results are available for this feature:

BLAST of CsGy5G002800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654760.1	4.6e-39	95.40	PREDICTED: serine racemase-like [Cucumis sativus] >XP_011654761.1 PREDICTED: ser...	[more]
XP_008437249.1	4.3e-37	90.80	PREDICTED: serine racemase [Cucumis melo]	[more]
XP_022155519.1	1.2e-34	86.21	serine racemase [Momordica charantia]	[more]
XP_022957814.1	8.3e-33	81.61	serine racemase [Cucurbita moschata] >XP_022957815.1 serine racemase [Cucurbita ...	[more]
XP_023532555.1	8.3e-33	81.61	serine racemase [Cucurbita pepo subsp. pepo] >XP_023532556.1 serine racemase [Cu...	[more]

BLAST of CsGy5G002800 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G11640.1	3.7e-27	68.35	serine racemase	[more]

BLAST of CsGy5G002800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2PGG3\|SRR_ARATH	6.7e-26	68.35	Serine racemase OS=Arabidopsis thaliana OX=3702 GN=SR PE=1 SV=1	[more]
sp\|A2XWA9\|SRR_ORYSI	3.1e-23	65.79	Serine racemase OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16936 PE=3 SV=1	[more]
sp\|Q7XSN8\|SRR_ORYSJ	3.1e-23	65.79	Serine racemase OS=Oryza sativa subsp. japonica OX=39947 GN=SERR PE=1 SV=2	[more]
sp\|Q54HH2\|SRR_DICDI	3.9e-18	59.72	Probable serine racemase OS=Dictyostelium discoideum OX=44689 GN=srr PE=3 SV=1	[more]
sp\|A0JNI4\|SRR_BOVIN	9.4e-12	45.00	Serine racemase OS=Bos taurus OX=9913 GN=SRR PE=2 SV=1	[more]

BLAST of CsGy5G002800 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KKK3\|A0A0A0KKK3_CUCSA	3.0e-39	95.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154750 PE=4 SV=1	[more]
tr\|A0A1S3AU40\|A0A1S3AU40_CUCME	2.8e-37	90.80	serine racemase OS=Cucumis melo OX=3656 GN=LOC103482734 PE=4 SV=1	[more]
tr\|A0A2P6P735\|A0A2P6P735_ROSCH	1.1e-28	71.26	Putative ammonia-lyase, Serine racemase OS=Rosa chinensis OX=74649 GN=RchiOBHm_C...	[more]
tr\|A0A251P646\|A0A251P646_PRUPE	4.1e-28	68.97	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G097600 PE=4 SV=1	[more]
tr\|A0A251P639\|A0A251P639_PRUPE	4.1e-28	68.97	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G097600 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006520	cellular amino acid metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0030170	pyridoxal phosphate binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036052	Trypto_synt_PLP_dependent
IPR000634	Ser/Thr_deHydtase_PyrdxlP-BS
IPR001926	PLP-dep

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006520	cellular amino acid metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0030170	pyridoxal phosphate binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G002800.1	CsGy5G002800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001926	Pyridoxal-phosphate dependent enzyme	PFAM	PF00291	PALP	coord: 27..88 e-value: 1.0E-11 score: 44.7
None	No IPR available	GENE3D	G3DSA:3.40.50.1100		coord: 19..61 e-value: 5.2E-21 score: 76.8
None	No IPR available	GENE3D	G3DSA:3.40.50.1100		coord: 62..88 e-value: 5.2E-21 score: 76.8
None	No IPR available	PANTHER	PTHR43050	FAMILY NOT NAMED	coord: 6..88
IPR000634	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	PROSITE	PS00165	DEHYDRATASE_SER_THR	coord: 54..67
IPR036052	Tryptophan synthase beta subunit-like PLP-dependent enzyme	SUPERFAMILY	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes	coord: 16..87

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G002800	Cla011461	Watermelon (97103) v1	cgybwmB381
CsGy5G002800	ClCG01G002850	Watermelon (Charleston Gray)	cgybwcgB332
CsGy5G002800	Lsi09G002730	Bottle gourd (USVL1VR-Ls)	cgyblsiB294
CsGy5G002800	Cp4.1LG05g03450	Cucurbita pepo (Zucchini)	cgybcpeB691
CsGy5G002800	MELO3C005662.2	Melon (DHL92) v3.6.1	cgybmedB298
CsGy5G002800	CsaV3_5G002940	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G002800	Cla97C01G002930	Watermelon (97103) v2	cgybwmbB319
CsGy5G002800	Bhi12G000232	Wax gourd	cgybwgoB427

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G002800	Cucumber (Gy14) v2	cgybcgybB146
CsGy5G002800	Cucumber (Gy14) v2	cgybcgybB091
CsGy5G002800	Cucurbita maxima (Rimu)	cgybcmaB608
CsGy5G002800	Cucurbita maxima (Rimu)	cgybcmaB635
CsGy5G002800	Cucurbita moschata (Rifu)	cgybcmoB583
CsGy5G002800	Cucurbita moschata (Rifu)	cgybcmoB606
CsGy5G002800	Cucurbita moschata (Rifu)	cgybcmoB613
CsGy5G002800	Cucurbita moschata (Rifu)	cgybcmoB681
CsGy5G002800	Cucurbita pepo (Zucchini)	cgybcpeB584
CsGy5G002800	Cucurbita pepo (Zucchini)	cgybcpeB597
CsGy5G002800	Cucumber (Chinese Long) v2	cgybcuB213
CsGy5G002800	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G002800	Cucumber (Chinese Long) v2	cgybcuB236
CsGy5G002800	Bottle gourd (USVL1VR-Ls)	cgyblsiB304
CsGy5G002800	Melon (DHL92) v3.5.1	cgybmeB298
CsGy5G002800	Melon (DHL92) v3.5.1	cgybmeB329
CsGy5G002800	Melon (DHL92) v3.5.1	cgybmeB353
CsGy5G002800	Melon (DHL92) v3.6.1	cgybmedB331
CsGy5G002800	Watermelon (Charleston Gray)	cgybwcgB360
CsGy5G002800	Watermelon (Charleston Gray)	cgybwcgB364
CsGy5G002800	Watermelon (97103) v1	cgybwmB378
CsGy5G002800	Wild cucumber (PI 183967)	cgybcpiB213
CsGy5G002800	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G002800	Wild cucumber (PI 183967)	cgybcpiB243
CsGy5G002800	Silver-seed gourd	carcgybB0912
CsGy5G002800	Silver-seed gourd	carcgybB0927
CsGy5G002800	Cucumber (Chinese Long) v3	cgybcucB216
CsGy5G002800	Cucumber (Chinese Long) v3	cgybcucB243
CsGy5G002800	Watermelon (97103) v2	cgybwmbB371
CsGy5G002800	Wax gourd	cgybwgoB456