CsGy4G021980 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G021980
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr4 : 28545861 .. 28546061 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCATTATAAATTCCTTGAACCAATTTTAAGGGGCATTAAATTAACTCATAACCAAAACACCAAAACCACCGGAAACTCACCCAAAATCAATCGGAGAGTGGCGGCGGCGAGCAAATACGGCGTAGGGAGGCGTCGGGTGATGGAGACGAGCGACCGGAAAGAAATTCGGAGGAGTGGTCCTCTTGAGGAATAA

mRNA sequence

ATGGCTTCCCATTATAAATTCCTTGAACCAATTTTAAGGGGCATTAAATTAACTCATAACCAAAACACCAAAACCACCGGAAACTCACCCAAAATCAATCGGAGAGTGGCGGCGGCGAGCAAATACGGCGTAGGGAGGCGTCGGGTGATGGAGACGAGCGACCGGAAAGAAATTCGGAGGAGTGGTCCTCTTGAGGAATAA

Coding sequence (CDS)

ATGGCTTCCCATTATAAATTCCTTGAACCAATTTTAAGGGGCATTAAATTAACTCATAACCAAAACACCAAAACCACCGGAAACTCACCCAAAATCAATCGGAGAGTGGCGGCGGCGAGCAAATACGGCGTAGGGAGGCGTCGGGTGATGGAGACGAGCGACCGGAAAGAAATTCGGAGGAGTGGTCCTCTTGAGGAATAA

Protein sequence

MASHYKFLEPILRGIKLTHNQNTKTTGNSPKINRRVAAASKYGVGRRRVMETSDRKEIRRSGPLEE

Homology

[Close]

BLAST of CsGy4G021980 vs. NCBI nr
Match: KGN55146.1 (hypothetical protein Csa_4G638350 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.4e-25
Identity = 65/67 (97.01%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MASHYKFLEPILRGIKLTHNQNTKTTGNSPKINRRVAAASKYGVGRRRVMETSDRKEI-R 60
          MASHYKFLEPILRGIKLT NQNTKTTGNSPKINRRVAAASKYGVGRRRVMETSDRKEI R
Sbjct: 1  MASHYKFLEPILRGIKLTRNQNTKTTGNSPKINRRVAAASKYGVGRRRVMETSDRKEIRR 60

Query: 61 RSGPLEE 67
          RSGPLEE
Sbjct: 61 RSGPLEE 67

[Close]

BLAST of CsGy4G021980 vs. TrEMBL
Match: tr|A0A0A0L4R8|A0A0A0L4R8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G638350 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.5e-26
Identity = 65/67 (97.01%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MASHYKFLEPILRGIKLTHNQNTKTTGNSPKINRRVAAASKYGVGRRRVMETSDRKEI-R 60
          MASHYKFLEPILRGIKLT NQNTKTTGNSPKINRRVAAASKYGVGRRRVMETSDRKEI R
Sbjct: 1  MASHYKFLEPILRGIKLTRNQNTKTTGNSPKINRRVAAASKYGVGRRRVMETSDRKEIRR 60

Query: 61 RSGPLEE 67
          RSGPLEE
Sbjct: 61 RSGPLEE 67

The following BLAST results are available for this feature:

BLAST of CsGy4G021980 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55146.1	1.4e-25	97.01	hypothetical protein Csa_4G638350 [Cucumis sativus]	[more]

BLAST of CsGy4G021980 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G021980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G021980 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L4R8\|A0A0A0L4R8_CUCSA	9.5e-26	97.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G638350 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G021980.1	CsGy4G021980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..66

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G021980	Csa4G638350	Cucumber (Chinese Long) v2	cgybcuB166
CsGy4G021980	CSPI04G23650	Wild cucumber (PI 183967)	cgybcpiB169
CsGy4G021980	CsaV3_4G033880	Cucumber (Chinese Long) v3	cgybcucB171

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G021980	Watermelon (97103) v2	cgybwmbB265
CsGy4G021980	Wax gourd	cgybwgoB398
CsGy4G021980	Cucurbita maxima (Rimu)	cgybcmaB466
CsGy4G021980	Cucurbita maxima (Rimu)	cgybcmaB515
CsGy4G021980	Cucurbita moschata (Rifu)	cgybcmoB434
CsGy4G021980	Cucurbita moschata (Rifu)	cgybcmoB484
CsGy4G021980	Cucurbita moschata (Rifu)	cgybcmoB510
CsGy4G021980	Cucurbita pepo (Zucchini)	cgybcpeB540
CsGy4G021980	Cucurbita pepo (Zucchini)	cgybcpeB563
CsGy4G021980	Bottle gourd (USVL1VR-Ls)	cgyblsiB271
CsGy4G021980	Melon (DHL92) v3.5.1	cgybmeB270
CsGy4G021980	Melon (DHL92) v3.6.1	cgybmedB267
CsGy4G021980	Watermelon (Charleston Gray)	cgybwcgB259
CsGy4G021980	Watermelon (97103) v1	cgybwmB326
CsGy4G021980	Silver-seed gourd	carcgybB0323