CsGy4G020910 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G020910
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Unknown Protein
Location	Chr4 : 27649341 .. 27650631 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGATGGAGTCTGGGTGGTTGGATTGAACGCTGAAGGGGCATTTGATTGGGTGGACGAGAAGTTGCCCTGTCGTAGCTTAAGTGGTCTTGTGTTGGCCACGTTTATTTTACATGGCGATGTATGCCTATCATTCTTCCATATTGAATACACTCTATTTTTATTTTTATTTGGTTAAACTCATTTTTATCGATGATTTTATTTATGGATTAATTCTAATGGGTCTCAATCACTCTATTTTTTTTATTGCATTTACTTCAAATTACGAATATATCACATTCACTTTTATCATTATTATTAACAAACGGTAACATGGTAACAGTAAATATGATAGATTCGTAATGTTAACGAGGTGTGATGACATGTCAAAGTTGTAAACATAGCTAGGTTGGCCTTATTTGTTTCTCCAAACTCGGAGTGTTGAAAGTTGCTATGGATAGCCTTTCACTCTTTGCAGTTATTATTAAATCAAAGCAATATTGAAAATATAGTCTACAAAATTTGCCAAAGAAGAAAAGAGAGGGAGAAGGGTTGGAAAGCTTGAAGTAAAAATGTGAAAGAGAGAGATAAATAAGTAAATACAAATAGGTGTATATTGAGATTTTTACATTGAAAAAATTAAGGAAGTCATATGAAATATTCATGATTCTGAAATAAAACAGCATATAATCAAATAATATTTTCATTAATAATTTTGTGGAGAATTAACAAAGCATAGATCAATTACTACGGGAATAATCAAACCAAAAAGAACTCGTAGAATAAAATACTTCTATTTTAAAAATAAAATAGTTTAGAACTAAATTTATTATAGATTTTTTACTTCAAAAAATAGACTAATATTGGTGTTTTCGAGATAAAGTCATCAAAGACAACCAACTATTTATCTAACAAAATTTTAAATTTTCATATTAATTTGTATCTAATTAATTTTAAATTAGGTGTGGTTTAAACCAATGATTAAAGGGTTTTTTCTTTTCTTTTTCTTTGGGTAATATTACAAGTTCAAAACTTAATATATATATATAAGTTTAAAAATATATTAGATAAGTAATTATGTAATTTTAAGGAAGTTGGTAATGTTGAGCTTAATGCTAGTTCAATGGATTTGAGTGAAGAACAAAGCGATTTTGGAATCAACACTGCAACGGGGAGGTCCTATGGGGAGTCTGTGTAATTCCGATGACGTTGATGAGAATGATGATGCCGAGATGGTGCTTCATGAATTGTTTGGAAATGGAATAAGTGGGAAAGAAAATGTGAATCAAAATGGAAGTGATCAGAATTAA

mRNA sequence

ATGATTGATGGAGTCTGGGTGGTTGGATTGAACGCTGAAGGGGCATTTGATTGGGTGGACGAGAAGTTGCCCTGTCGTAGCTTAAGTGGTCTTGTGTTGGCCACGTTTATTTTACATGGCGATAACAAAGCGATTTTGGAATCAACACTGCAACGGGGAGGTCCTATGGGGAGTCTGTGTAATTCCGATGACGTTGATGAGAATGATGATGCCGAGATGGTGCTTCATGAATTGTTTGGAAATGGAATAAGTGGGAAAGAAAATGTGAATCAAAATGGAAGTGATCAGAATTAA

Coding sequence (CDS)

ATGATTGATGGAGTCTGGGTGGTTGGATTGAACGCTGAAGGGGCATTTGATTGGGTGGACGAGAAGTTGCCCTGTCGTAGCTTAAGTGGTCTTGTGTTGGCCACGTTTATTTTACATGGCGATAACAAAGCGATTTTGGAATCAACACTGCAACGGGGAGGTCCTATGGGGAGTCTGTGTAATTCCGATGACGTTGATGAGAATGATGATGCCGAGATGGTGCTTCATGAATTGTTTGGAAATGGAATAAGTGGGAAAGAAAATGTGAATCAAAATGGAAGTGATCAGAATTAA

Protein sequence

MIDGVWVVGLNAEGAFDWVDEKLPCRSLSGLVLATFILHGDNKAILESTLQRGGPMGSLCNSDDVDENDDAEMVLHELFGNGISGKENVNQNGSDQN

Homology

[Close]

BLAST of CsGy4G020910 vs. NCBI nr
Match: XP_008442937.1 (PREDICTED: uncharacterized protein LOC103486691 [Cucumis melo])

HSP 1 Score: 53.5 bits (127), Expect = 4.6e-04
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 53  GGPMGSLCNSDDVDENDDAEMVLHELFGNGISGKENVNQ 92
           GGPMGS+  +D V+ NDDAEM+LH L+ NGISG+ENVNQ
Sbjct: 315 GGPMGSV-YTDGVEVNDDAEMMLHGLYENGISGEENVNQ 352

[Close]

BLAST of CsGy4G020910 vs. TrEMBL
Match: tr|A0A1S3B6W2|A0A1S3B6W2_CUCME (uncharacterized protein LOC103486691 OS=Cucumis melo OX=3656 GN=LOC103486691 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.0e-04
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 53  GGPMGSLCNSDDVDENDDAEMVLHELFGNGISGKENVNQ 92
           GGPMGS+  +D V+ NDDAEM+LH L+ NGISG+ENVNQ
Sbjct: 315 GGPMGSV-YTDGVEVNDDAEMMLHGLYENGISGEENVNQ 352

The following BLAST results are available for this feature:

BLAST of CsGy4G020910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442937.1	4.6e-04	69.23	PREDICTED: uncharacterized protein LOC103486691 [Cucumis melo]	[more]

BLAST of CsGy4G020910 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G020910 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G020910 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B6W2\|A0A1S3B6W2_CUCME	3.0e-04	69.23	uncharacterized protein LOC103486691 OS=Cucumis melo OX=3656 GN=LOC103486691 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000987	core promoter proximal region sequence-specific DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000982	transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G020910.1	CsGy4G020910.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G020910	Silver-seed gourd	carcgybB0323
CsGy4G020910	Silver-seed gourd	carcgybB0634
CsGy4G020910	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G020910	Watermelon (97103) v2	cgybwmbB265
CsGy4G020910	Watermelon (97103) v2	cgybwmbB269
CsGy4G020910	Wax gourd	cgybwgoB398
CsGy4G020910	Cucurbita maxima (Rimu)	cgybcmaB470
CsGy4G020910	Cucurbita maxima (Rimu)	cgybcmaB515
CsGy4G020910	Cucurbita moschata (Rifu)	cgybcmoB437
CsGy4G020910	Cucurbita moschata (Rifu)	cgybcmoB484
CsGy4G020910	Cucurbita pepo (Zucchini)	cgybcpeB540
CsGy4G020910	Cucurbita pepo (Zucchini)	cgybcpeB566
CsGy4G020910	Cucumber (Chinese Long) v2	cgybcuB166
CsGy4G020910	Bottle gourd (USVL1VR-Ls)	cgyblsiB263
CsGy4G020910	Melon (DHL92) v3.5.1	cgybmeB265
CsGy4G020910	Melon (DHL92) v3.6.1	cgybmedB263
CsGy4G020910	Watermelon (Charleston Gray)	cgybwcgB259
CsGy4G020910	Watermelon (97103) v1	cgybwmB326
CsGy4G020910	Wild cucumber (PI 183967)	cgybcpiB169