CsGy4G020780 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G020780
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Pentatricopeptide repeat-containing protein
Location	Chr4 : 27557123 .. 27558358 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCGTTCTTCTCTACGCCTTTCTCAACTCTTTTTGTTAAACTCCATTTTCTCTTCATCGTCTCCTTCGATTCCTCTTCATCTTCCTTCATCTTCCTCCTCTTTCTCCACTTCCCCTAAACAACCCTCTGTTTTCCCCCATAAACTCAGCCACAGAGATTGGTTATCTCCCAATGAAGTCATCAATATCATCCAACAAATCCAACATCCTTCCTCTGTCCTTGCATTCCTCCACCAATGGTCAAATCGCAAGGACTACAAACCCAACAAAGAAATCTACACTCTCGTTGTCTCCAGACTTGCCGAGGGGCGGTTGTTTGATGATATTGAAAAGGTGATGTTGAGAATCAAAGCCGAAAGGAATTTCCGCCTGTCCGATGAGTTTTTCTACCATGTTATTAAGATTTATGGTAATGTTGCTGGTCGTTTAAATAAAGCTATTGATACCCTTTTCGATATGCCCAATTATAACTGCTGGCCCAGTGTTAAAACCTTTAATTTTGTGCTTAATTTGCTTGTTTCGGCCAAGATGTTTGATGTTGTTCATGAGGTCTATATGGGTGCTCCTAAGTTGGGGATTGAGATTGATGCTTGTTGTCTTAATATACTCGTTAAAGGGTTGTGCCAGAGTGGGAATCTTGATGCTGCACTCAAGGTGCTCGATGAATTTCCTCAACAGAGGTGTAGGCCAAATGTCAGAACATTTTCAACCCTTCTGCATGGGTTGTGTGAGAATGGGGAACTAGGGAGAGCATTGGAGCTCTTCTGTAAAATGGAAAATGAAGGTGTTTGCCCCGACACTATAACGTTTAACATATTGATTTCGGGGCTTAGAAAGAAGAAGAGAATTGAAGAGGCAATAGAACTTTTGGGGAGAATGAAGCTTAAAGGTTGCTACCCCAATGCGGGGACTTATCAAGAGGTTTTGTATGGCCTGCTCGATACGGGTAAGTTTATCGAGGCAAGGGATTGTATGCATCGGATGATATCGGAGGGTATGGACCCAAGTTTCGTTTCATATAAGAAGTTGTTGTCTGGGCTATGTAAGAAGAAACTAACTGAGGATGTGGATTGGGTTCTGAAACAGATGGTTATGCAAGGTTTCGTCCCAAAAGTGGGGATGTGGAAAGTGATTTTACGTTGTATGTTGTCAGGAAATGAAGAATGCATTGATATCACTGATGAAGTATTTGAGAAATTTGTGTTGCTTGCAAAGGAAGATGGGGCGGCGTAA

mRNA sequence

ATGATCCGTTCTTCTCTACGCCTTTCTCAACTCTTTTTGTTAAACTCCATTTTCTCTTCATCGTCTCCTTCGATTCCTCTTCATCTTCCTTCATCTTCCTCCTCTTTCTCCACTTCCCCTAAACAACCCTCTGTTTTCCCCCATAAACTCAGCCACAGAGATTGGTTATCTCCCAATGAAGTCATCAATATCATCCAACAAATCCAACATCCTTCCTCTGTCCTTGCATTCCTCCACCAATGGTCAAATCGCAAGGACTACAAACCCAACAAAGAAATCTACACTCTCGTTGTCTCCAGACTTGCCGAGGGGCGGTTGTTTGATGATATTGAAAAGGTGATGTTGAGAATCAAAGCCGAAAGGAATTTCCGCCTGTCCGATGAGTTTTTCTACCATGTTATTAAGATTTATGGTAATGTTGCTGGTCGTTTAAATAAAGCTATTGATACCCTTTTCGATATGCCCAATTATAACTGCTGGCCCAGTGTTAAAACCTTTAATTTTGTGCTTAATTTGCTTGTTTCGGCCAAGATGTTTGATGTTGTTCATGAGGTCTATATGGGTGCTCCTAAGTTGGGGATTGAGATTGATGCTTGTTGTCTTAATATACTCGTTAAAGGGTTGTGCCAGAGTGGGAATCTTGATGCTGCACTCAAGGTGCTCGATGAATTTCCTCAACAGAGGTGTAGGCCAAATGTCAGAACATTTTCAACCCTTCTGCATGGGTTGTGTGAGAATGGGGAACTAGGGAGAGCATTGGAGCTCTTCTGTAAAATGGAAAATGAAGGTGTTTGCCCCGACACTATAACGTTTAACATATTGATTTCGGGGCTTAGAAAGAAGAAGAGAATTGAAGAGGCAATAGAACTTTTGGGGAGAATGAAGCTTAAAGGTTGCTACCCCAATGCGGGGACTTATCAAGAGGTTTTGTATGGCCTGCTCGATACGGGTAAGTTTATCGAGGCAAGGGATTGTATGCATCGGATGATATCGGAGGGTATGGACCCAAGTTTCGTTTCATATAAGAAGTTGTTGTCTGGGCTATGTAAGAAGAAACTAACTGAGGATGTGGATTGGGTTCTGAAACAGATGGTTATGCAAGGTTTCGTCCCAAAAGTGGGGATGTGGAAAGTGATTTTACGTTGTATGTTGTCAGGAAATGAAGAATGCATTGATATCACTGATGAAGTATTTGAGAAATTTGTGTTGCTTGCAAAGGAAGATGGGGCGGCGTAA

Coding sequence (CDS)

ATGATCCGTTCTTCTCTACGCCTTTCTCAACTCTTTTTGTTAAACTCCATTTTCTCTTCATCGTCTCCTTCGATTCCTCTTCATCTTCCTTCATCTTCCTCCTCTTTCTCCACTTCCCCTAAACAACCCTCTGTTTTCCCCCATAAACTCAGCCACAGAGATTGGTTATCTCCCAATGAAGTCATCAATATCATCCAACAAATCCAACATCCTTCCTCTGTCCTTGCATTCCTCCACCAATGGTCAAATCGCAAGGACTACAAACCCAACAAAGAAATCTACACTCTCGTTGTCTCCAGACTTGCCGAGGGGCGGTTGTTTGATGATATTGAAAAGGTGATGTTGAGAATCAAAGCCGAAAGGAATTTCCGCCTGTCCGATGAGTTTTTCTACCATGTTATTAAGATTTATGGTAATGTTGCTGGTCGTTTAAATAAAGCTATTGATACCCTTTTCGATATGCCCAATTATAACTGCTGGCCCAGTGTTAAAACCTTTAATTTTGTGCTTAATTTGCTTGTTTCGGCCAAGATGTTTGATGTTGTTCATGAGGTCTATATGGGTGCTCCTAAGTTGGGGATTGAGATTGATGCTTGTTGTCTTAATATACTCGTTAAAGGGTTGTGCCAGAGTGGGAATCTTGATGCTGCACTCAAGGTGCTCGATGAATTTCCTCAACAGAGGTGTAGGCCAAATGTCAGAACATTTTCAACCCTTCTGCATGGGTTGTGTGAGAATGGGGAACTAGGGAGAGCATTGGAGCTCTTCTGTAAAATGGAAAATGAAGGTGTTTGCCCCGACACTATAACGTTTAACATATTGATTTCGGGGCTTAGAAAGAAGAAGAGAATTGAAGAGGCAATAGAACTTTTGGGGAGAATGAAGCTTAAAGGTTGCTACCCCAATGCGGGGACTTATCAAGAGGTTTTGTATGGCCTGCTCGATACGGGTAAGTTTATCGAGGCAAGGGATTGTATGCATCGGATGATATCGGAGGGTATGGACCCAAGTTTCGTTTCATATAAGAAGTTGTTGTCTGGGCTATGTAAGAAGAAACTAACTGAGGATGTGGATTGGGTTCTGAAACAGATGGTTATGCAAGGTTTCGTCCCAAAAGTGGGGATGTGGAAAGTGATTTTACGTTGTATGTTGTCAGGAAATGAAGAATGCATTGATATCACTGATGAAGTATTTGAGAAATTTGTGTTGCTTGCAAAGGAAGATGGGGCGGCGTAA

Protein sequence

MIRSSLRLSQLFLLNSIFSSSSPSIPLHLPSSSSSFSTSPKQPSVFPHKLSHRDWLSPNEVINIIQQIQHPSSVLAFLHQWSNRKDYKPNKEIYTLVVSRLAEGRLFDDIEKVMLRIKAERNFRLSDEFFYHVIKIYGNVAGRLNKAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFDVVHEVYMGAPKLGIEIDACCLNILVKGLCQSGNLDAALKVLDEFPQQRCRPNVRTFSTLLHGLCENGELGRALELFCKMENEGVCPDTITFNILISGLRKKKRIEEAIELLGRMKLKGCYPNAGTYQEVLYGLLDTGKFIEARDCMHRMISEGMDPSFVSYKKLLSGLCKKKLTEDVDWVLKQMVMQGFVPKVGMWKVILRCMLSGNEECIDITDEVFEKFVLLAKEDGAA

Homology

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BLAST of CsGy4G020780 vs. NCBI nr
Match: XP_004146072.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g14580, mitochondrial [Cucumis sativus] >KGN55005.1 hypothetical protein Csa_4G621180 [Cucumis sativus])

HSP 1 Score: 476.5 bits (1225), Expect = 9.3e-131
Identity = 411/411 (100.00%), Postives = 411/411 (100.00%), Query Frame = 0


Query: 1   MIRSSLRLSQLFLLNSIFSSSSPSIPLHLPSSSSSFSTSPKQPSVFPHKLSHRDWLSPNE 60
           MIRSSLRLSQLFLLNSIFSSSSPSIPLHLPSSSSSFSTSPKQPSVFPHKLSHRDWLSPNE
Sbjct: 1   MIRSSLRLSQLFLLNSIFSSSSPSIPLHLPSSSSSFSTSPKQPSVFPHKLSHRDWLSPNE 60

Query: 61  VINIIQQIQHPSSVLAFLHQWSNRKDYKPNKEIYTLVVSRLAEGRLFDDIEKVMLRIKAE 120
           VINIIQQIQHPSSVLAFLHQWSNRKDYKPNKEIYTLVVSRLAEGRLFDDIEKVMLRIKAE
Sbjct: 61  VINIIQQIQHPSSVLAFLHQWSNRKDYKPNKEIYTLVVSRLAEGRLFDDIEKVMLRIKAE 120

Query: 121 RNFRLSDEFFYHVIKIYGNVAGRLNKAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFD 180
           RNFRLSDEFFYHVIKIYGNVAGRLNKAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFD
Sbjct: 121 RNFRLSDEFFYHVIKIYGNVAGRLNKAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFD 180

Query: 181 VVHEVYMGAPKLGIEIDACCLNILVKGLCQSGNLDAALKVLDEFPQQRCRPNVRTXXXXX 240
           VVHEVYMGAPKLGIEIDACCLNILVKGLCQSGNLDAALKVLDEFPQQRCRPNVRTXXXXX
Sbjct: 181 VVHEVYMGAPKLGIEIDACCLNILVKGLCQSGNLDAALKVLDEFPQQRCRPNVRTXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXRCMLSGNEECIDITDEVFEKFVLLAKEDGAA 412
           XXXXXXXXXXXXXXXXXXXXRCMLSGNEECIDITDEVFEKFVLLAKEDGAA
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXRCMLSGNEECIDITDEVFEKFVLLAKEDGAA 411

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BLAST of CsGy4G020780 vs. NCBI nr
Match: XP_008463670.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g14580, mitochondrial [Cucumis melo])

HSP 1 Score: 456.4 bits (1173), Expect = 9.9e-125
Identity = 228/235 (97.02%), Postives = 231/235 (98.30%), Query Frame = 0


Query: 1   MIRSSLRLSQLFLLNSIFSSSSPSIPLHLPSSSSSFSTSPKQPSVFPHKLSHRDWLSPNE 60
           MIRSSLRLSQL LLNSIFSSSSPSIPLHLPSSSSSFSTSPKQPSVF HKLSHRDWLSPNE
Sbjct: 1   MIRSSLRLSQLSLLNSIFSSSSPSIPLHLPSSSSSFSTSPKQPSVFSHKLSHRDWLSPNE 60

Query: 61  VINIIQQIQHPSSVLAFLHQWSNRKDYKPNKEIYTLVVSRLAEGRLFDDIEKVMLRIKAE 120
           VI IIQQIQHPSSVLAFLHQWSNRKDYKPNKEIYTL+VSRLAEGRLFDDIEKVMLRIKAE
Sbjct: 61  VIKIIQQIQHPSSVLAFLHQWSNRKDYKPNKEIYTLIVSRLAEGRLFDDIEKVMLRIKAE 120

Query: 121 RNFRLSDEFFYHVIKIYGNVAGRLNKAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFD 180
           RNFRLSDEFFYHVIKIYGNVAGRL+KAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFD
Sbjct: 121 RNFRLSDEFFYHVIKIYGNVAGRLSKAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFD 180

Query: 181 VVHEVYMGAPKLGIEIDACCLNILVKGLCQSGNLDAALKVLDEFPQQRCRPNVRT 236
           VVHEVYMGAPKLGIEIDACCLNILVKGLCQSGNLDAA K+LDEFPQQRCRPNVRT
Sbjct: 181 VVHEVYMGAPKLGIEIDACCLNILVKGLCQSGNLDAAFKLLDEFPQQRCRPNVRT 235

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BLAST of CsGy4G020780 vs. NCBI nr
Match: XP_022935997.1 (pentatricopeptide repeat-containing protein At3g14580, mitochondrial [Cucurbita moschata])

HSP 1 Score: 357.5 bits (916), Expect = 6.3e-95
Identity = 169/186 (90.86%), Postives = 179/186 (96.24%), Query Frame = 0


Query: 50  LSHRDWLSPNEVINIIQQIQHPSSVLAFLHQWSNRKDYKPNKEIYTLVVSRLAEGRLFDD 109
           LSHRDWLSPNEVI IIQQI+ P +VLAF+HQWSNRKDYKPNKEIYTLVVSRLAEG LFDD
Sbjct: 21  LSHRDWLSPNEVIKIIQQIRDPPAVLAFIHQWSNRKDYKPNKEIYTLVVSRLAEGCLFDD 80

Query: 110 IEKVMLRIKAERNFRLSDEFFYHVIKIYGNVAGRLNKAIDTLFDMPNYNCWPSVKTFNFV 169
           IE VMLRIK+ERNFRLSDEFFYHVIKIYGNVAGR+ KAI+TLFDMPNYNCWPSVKTFNFV
Sbjct: 81  IETVMLRIKSERNFRLSDEFFYHVIKIYGNVAGRIGKAIETLFDMPNYNCWPSVKTFNFV 140

Query: 170 LNLLVSAKMFDVVHEVYMGAPKLGIEIDACCLNILVKGLCQSGNLDAALKVLDEFPQQRC 229
           LNLLVSAKMFDVVHEVYMGAPKLGIEIDACCLNIL+KGLC+SGNL+AALKV DEFPQQ+C
Sbjct: 141 LNLLVSAKMFDVVHEVYMGAPKLGIEIDACCLNILIKGLCESGNLNAALKVFDEFPQQKC 200

Query: 230 RPNVRT 236
           RPNVRT
Sbjct: 201 RPNVRT 206

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BLAST of CsGy4G020780 vs. NCBI nr
Match: XP_022133930.1 (pentatricopeptide repeat-containing protein At3g14580, mitochondrial [Momordica charantia])

HSP 1 Score: 332.0 bits (850), Expect = 2.8e-87
Identity = 169/229 (73.80%), Postives = 191/229 (83.41%), Query Frame = 0


Query: 7   RLSQLFLLNSIFSSSSPSIPLHLPSSSSSFSTSPKQPSVFPHKLSHRDWLSPNEVINIIQ 66
           R  ++ LL+SIFS +  SIPL L                   +LS RDWLSPNEVI IIQ
Sbjct: 35  RRPRISLLSSIFSPTR-SIPLRL---XXXXXXXXXXXXXXXDRLSLRDWLSPNEVITIIQ 94

Query: 67  QIQHPSSVLAFLHQWSNRKDYKPNKEIYTLVVSRLAEGRLFDDIEKVMLRIKAERNFRLS 126
           +I  P SVL FLH+WSNRKDYKPN+ IY L+VS+LAEGRLFD I+ +MLRIKA++N RLS
Sbjct: 95  RITDPPSVLEFLHRWSNRKDYKPNEAIYILIVSKLAEGRLFDAIDNLMLRIKAQKNCRLS 154

Query: 127 DEFFYHVIKIYGNVAGRLNKAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFDVVHEVY 186
           D FF+HVIKIYGNVAGR++KAI+TLFDMPNYNCWPSVKTFN+VLNLLVSAK+FDVVHEVY
Sbjct: 155 DAFFFHVIKIYGNVAGRISKAIETLFDMPNYNCWPSVKTFNYVLNLLVSAKLFDVVHEVY 214

Query: 187 MGAPKLGIEIDACCLNILVKGLCQSGNLDAALKVLDEFPQQRCRPNVRT 236
           MGAPKLGIEIDACCLNILVKGLC+SGN+DAALKVLDEFPQQRCRPNVRT
Sbjct: 215 MGAPKLGIEIDACCLNILVKGLCESGNVDAALKVLDEFPQQRCRPNVRT 259

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BLAST of CsGy4G020780 vs. NCBI nr
Match: XP_023536209.1 (pentatricopeptide repeat-containing protein At3g14580, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 332.0 bits (850), Expect = 2.8e-87
Identity = 158/173 (91.33%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 50  LSHRDWLSPNEVINIIQQIQHPSSVLAFLHQWSNRKDYKPNKEIYTLVVSRLAEGRLFDD 109
           LSHRDWLSPNEVI IIQQI+ P +VLAF+HQWSNRKDYKPNKEIYTLVVSRLAEG LFDD
Sbjct: 21  LSHRDWLSPNEVIKIIQQIRDPPAVLAFIHQWSNRKDYKPNKEIYTLVVSRLAEGCLFDD 80

Query: 110 IEKVMLRIKAERNFRLSDEFFYHVIKIYGNVAGRLNKAIDTLFDMPNYNCWPSVKTFNFV 169
           IE VMLRIK+ERNFRLSDEFFYHVIKIYGNVAGR+ KAI+TLFDMPNYNCWPSVKTFNFV
Sbjct: 81  IETVMLRIKSERNFRLSDEFFYHVIKIYGNVAGRIGKAIETLFDMPNYNCWPSVKTFNFV 140

Query: 170 LNLLVSAKMFDVVHEVYMGAPKLGIEIDACCLNILVKGLCQSGNLDAALKVLD 223
           LNLLVSAKMFDVVHEVYMGAPKLGIEIDACCLNIL+KGLC+SGNLDAALKV D
Sbjct: 141 LNLLVSAKMFDVVHEVYMGAPKLGIEIDACCLNILIKGLCESGNLDAALKVFD 193

[Close]

BLAST of CsGy4G020780 vs. TAIR10
Match: AT3G14580.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 250.0 bits (637), Expect = 2.6e-66
Identity = 113/217 (52.07%), Postives = 168/217 (77.42%), Query Frame = 0


Query: 19  SSSSPSIPLHLPSSSSSFSTSPKQPSVFPH--KLSHRDWLSPNEVINIIQQIQHPSSVLA 78
           S SS  + +   SSS  +++S ++ S      +L H+DWL+PNEV+ I   ++ PS +L 
Sbjct: 21  SLSSSGVRILSSSSSDRYTSSSQRYSGDDRLARLRHKDWLAPNEVLKIFDNVKDPSFLLP 80

Query: 79  FLHQWSNRKDYKPNKEIYTLVVSRLAEGRLFDDIEKVMLRIKAERNFRLSDEFFYHVIKI 138
               +S RKDY+P + +Y L++++  + +++D+IE+VM  IK E+  R S+EFFY++++I
Sbjct: 81  AYQHYSKRKDYQPTESLYALMINKFGQAKMYDEIEEVMRTIKLEKRCRFSEEFFYNLMRI 140

Query: 139 YGNVAGRLNKAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFDVVHEVYMGAPKLGIEI 198
           YGN+AGR+N+AI+ LF MP++ CWPS K+FNF+LNLLVSAK+FD +H++++ APKLG+EI
Sbjct: 141 YGNLAGRINRAIEILFGMPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEI 200

Query: 199 DACCLNILVKGLCQSGNLDAALKVLDEFPQQRCRPNV 234
           DACCLNIL+KGLC+SGNL+AAL++LDEFPQQ+ RPNV
Sbjct: 201 DACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNV 237

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BLAST of CsGy4G020780 vs. TAIR10
Match: AT5G16420.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 82.8 bits (203), Expect = 5.4e-16
Identity = 47/171 (27.49%), Postives = 94/171 (54.97%), Query Frame = 0


Query: 56  LSPNEVINIIQQIQHPSSVL-AFLHQWSNRKDYKPNKEIYTLVVSRLAEGRLFDDIEKVM 115
           L P  ++++I Q Q+    L  FL+   +   +  N + Y  ++ +L+  R FD +E +M
Sbjct: 47  LFPKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLM 106

Query: 116 LRIK-AERNFRLSDEFFYHVIKIYGNVAGRLNKAIDTLFDMPNYNCWPSVKTFNFVLNLL 175
             ++ +    +  +  F  +++ YG +AGR   ++     +P++    SV++ N +LN+L
Sbjct: 107 ADLRNSYPPIKCGENLFIDLLRNYG-LAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVL 166

Query: 176 VSAKMFDVVHEVYMGAPK-LGIEIDACCLNILVKGLCQSGNLDAALKVLDE 224
           +  + FD+VH ++  + +  GI  +    N+LVK LC+  ++++A KVLDE
Sbjct: 167 IQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDE 216

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BLAST of CsGy4G020780 vs. TAIR10
Match: AT2G38420.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 80.5 bits (197), Expect = 2.7e-15
Identity = 39/135 (28.89%), Postives = 73/135 (54.07%), Query Frame = 0


Query: 88  KPNKEIYTLVVSRLAEGRLFDDIEKVMLRIKAERNFRLSDEFFYHVIKIYGNVAGRLNKA 147
           +P  + Y  V+  LA+    ++I  V+  ++    F   +  F  VI  YG  +GR+ +A
Sbjct: 69  EPTPQAYRFVIKTLAKSSQLENISSVLYHLEVSEKFDTPESIFRDVIAAYG-FSGRIEEA 128

Query: 148 IDTLFDMPNYNCWPSVKTFNFVLNLLVSAKM-FDVVHEVYMGAPKLGIEIDACCLNILVK 207
           I+  F +PN+ C PS  T N +L +LV  +   ++V E+ + A ++G+ ++     IL+ 
Sbjct: 129 IEVFFKIPNFRCVPSAYTLNALLLVLVRKRQSLELVPEILVKACRMGVRLEESTFGILID 188

Query: 208 GLCQSGNLDAALKVL 222
            LC+ G +D A +++
Sbjct: 189 ALCRIGEVDCATELV 202

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BLAST of CsGy4G020780 vs. TAIR10
Match: AT1G53330.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 77.8 bits (190), Expect = 1.7e-14
Identity = 41/136 (30.15%), Postives = 78/136 (57.35%), Query Frame = 0


Query: 94  YTLVVSRLAEGRLFDDIEKVMLRIKAERNFRLSDEFFYHVIKIYGNVAGRL-NKAIDTLF 153
           Y +++++L   ++FD++++V+L +K +     ++  F +VI  +G   G+L ++A+    
Sbjct: 50  YDIIITKLGGSKMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGR--GKLPSRALHMFD 109

Query: 154 DMPNYNCWPSVKTFNFVLNLLVSAKMFDVVHEVYMGAPKLGIEIDACCLNILVKGLCQSG 213
           +MP Y C  +VK+ N +L+ L+     + + E      + G + DAC  NIL+ G  QSG
Sbjct: 110 EMPQYRCQRTVKSLNSLLSALLKCGELEKMKERLSSIDEFG-KPDACTYNILIHGCSQSG 169

Query: 214 NLDAALKVLDEFPQQR 229
             D ALK+ DE  +++
Sbjct: 170 CFDDALKLFDEMVKKK 182

[Close]

BLAST of CsGy4G020780 vs. TAIR10
Match: AT1G80150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 75.9 bits (185), Expect = 6.6e-14
Identity = 52/147 (35.37%), Postives = 71/147 (48.30%), Query Frame = 0


Query: 90  NKEIYTLVVSRLAEGRLFDDIEKVMLRIKAERNFRLSDEFFYHVIKIYGNVAGRLNKAID 149
           N+  +   VSRLA     D IE ++   K     R  + F   +I +YG  AG   +A+D
Sbjct: 70  NRFAFEDTVSRLAGAGRLDFIEDLLEHQKTLPQGR-REGFIVRIIMLYGK-AGMTKQALD 129

Query: 150 TLFDMPNYNCWPSVKTFNFVLNLLVSAKMFDVVHEVYMGAP-KLGIEIDACCLNILVKGL 209
           T F+M  Y C  SVK+FN  L +L        + E    AP K GI+IDA   NI +K  
Sbjct: 130 TFFNMDLYGCKRSVKSFNAALQVLSFNPDLHTIWEFLHDAPSKYGIDIDAVSFNIAIKSF 189

Query: 210 CQSGNLDAALKVLDEFPQQRCRPNVRT 236
           C+ G LD A   + E  +    P+V T
Sbjct: 190 CELGILDGAYMAMREMEKSGLTPDVVT 214

[Close]

BLAST of CsGy4G020780 vs. Swiss-Prot
Match: sp|Q9LUD6|PP230_ARATH (Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g14580 PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 4.6e-65
Identity = 113/217 (52.07%), Postives = 168/217 (77.42%), Query Frame = 0


Query: 19  SSSSPSIPLHLPSSSSSFSTSPKQPSVFPH--KLSHRDWLSPNEVINIIQQIQHPSSVLA 78
           S SS  + +   SSS  +++S ++ S      +L H+DWL+PNEV+ I   ++ PS +L 
Sbjct: 21  SLSSSGVRILSSSSSDRYTSSSQRYSGDDRLARLRHKDWLAPNEVLKIFDNVKDPSFLLP 80

Query: 79  FLHQWSNRKDYKPNKEIYTLVVSRLAEGRLFDDIEKVMLRIKAERNFRLSDEFFYHVIKI 138
               +S RKDY+P + +Y L++++  + +++D+IE+VM  IK E+  R S+EFFY++++I
Sbjct: 81  AYQHYSKRKDYQPTESLYALMINKFGQAKMYDEIEEVMRTIKLEKRCRFSEEFFYNLMRI 140

Query: 139 YGNVAGRLNKAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFDVVHEVYMGAPKLGIEI 198
           YGN+AGR+N+AI+ LF MP++ CWPS K+FNF+LNLLVSAK+FD +H++++ APKLG+EI
Sbjct: 141 YGNLAGRINRAIEILFGMPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEI 200

Query: 199 DACCLNILVKGLCQSGNLDAALKVLDEFPQQRCRPNV 234
           DACCLNIL+KGLC+SGNL+AAL++LDEFPQQ+ RPNV
Sbjct: 201 DACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNV 237

[Close]

BLAST of CsGy4G020780 vs. Swiss-Prot
Match: sp|Q9FFE3|PP388_ARATH (Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g16420 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 9.8e-15
Identity = 47/171 (27.49%), Postives = 94/171 (54.97%), Query Frame = 0


Query: 56  LSPNEVINIIQQIQHPSSVL-AFLHQWSNRKDYKPNKEIYTLVVSRLAEGRLFDDIEKVM 115
           L P  ++++I Q Q+    L  FL+   +   +  N + Y  ++ +L+  R FD +E +M
Sbjct: 47  LFPKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLM 106

Query: 116 LRIK-AERNFRLSDEFFYHVIKIYGNVAGRLNKAIDTLFDMPNYNCWPSVKTFNFVLNLL 175
             ++ +    +  +  F  +++ YG +AGR   ++     +P++    SV++ N +LN+L
Sbjct: 107 ADLRNSYPPIKCGENLFIDLLRNYG-LAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVL 166

Query: 176 VSAKMFDVVHEVYMGAPK-LGIEIDACCLNILVKGLCQSGNLDAALKVLDE 224
           +  + FD+VH ++  + +  GI  +    N+LVK LC+  ++++A KVLDE
Sbjct: 167 IQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDE 216

[Close]

BLAST of CsGy4G020780 vs. Swiss-Prot
Match: sp|Q8L6Y7|PP193_ARATH (Pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g38420 PE=2 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 4.8e-14
Identity = 39/135 (28.89%), Postives = 73/135 (54.07%), Query Frame = 0


Query: 88  KPNKEIYTLVVSRLAEGRLFDDIEKVMLRIKAERNFRLSDEFFYHVIKIYGNVAGRLNKA 147
           +P  + Y  V+  LA+    ++I  V+  ++    F   +  F  VI  YG  +GR+ +A
Sbjct: 69  EPTPQAYRFVIKTLAKSSQLENISSVLYHLEVSEKFDTPESIFRDVIAAYG-FSGRIEEA 128

Query: 148 IDTLFDMPNYNCWPSVKTFNFVLNLLVSAKM-FDVVHEVYMGAPKLGIEIDACCLNILVK 207
           I+  F +PN+ C PS  T N +L +LV  +   ++V E+ + A ++G+ ++     IL+ 
Sbjct: 129 IEVFFKIPNFRCVPSAYTLNALLLVLVRKRQSLELVPEILVKACRMGVRLEESTFGILID 188

Query: 208 GLCQSGNLDAALKVL 222
            LC+ G +D A +++
Sbjct: 189 ALCRIGEVDCATELV 202

[Close]

BLAST of CsGy4G020780 vs. Swiss-Prot
Match: sp|Q9MAG8|PPR79_ARATH (Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana OX=3702 GN=At1g53330 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-13
Identity = 41/136 (30.15%), Postives = 78/136 (57.35%), Query Frame = 0


Query: 94  YTLVVSRLAEGRLFDDIEKVMLRIKAERNFRLSDEFFYHVIKIYGNVAGRL-NKAIDTLF 153
           Y +++++L   ++FD++++V+L +K +     ++  F +VI  +G   G+L ++A+    
Sbjct: 50  YDIIITKLGGSKMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGR--GKLPSRALHMFD 109

Query: 154 DMPNYNCWPSVKTFNFVLNLLVSAKMFDVVHEVYMGAPKLGIEIDACCLNILVKGLCQSG 213
           +MP Y C  +VK+ N +L+ L+     + + E      + G + DAC  NIL+ G  QSG
Sbjct: 110 EMPQYRCQRTVKSLNSLLSALLKCGELEKMKERLSSIDEFG-KPDACTYNILIHGCSQSG 169

Query: 214 NLDAALKVLDEFPQQR 229
             D ALK+ DE  +++
Sbjct: 170 CFDDALKLFDEMVKKK 182

[Close]

BLAST of CsGy4G020780 vs. Swiss-Prot
Match: sp|Q8GW57|PP134_ARATH (Pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g80150 PE=2 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-12
Identity = 52/147 (35.37%), Postives = 71/147 (48.30%), Query Frame = 0


Query: 90  NKEIYTLVVSRLAEGRLFDDIEKVMLRIKAERNFRLSDEFFYHVIKIYGNVAGRLNKAID 149
           N+  +   VSRLA     D IE ++   K     R  + F   +I +YG  AG   +A+D
Sbjct: 70  NRFAFEDTVSRLAGAGRLDFIEDLLEHQKTLPQGR-REGFIVRIIMLYGK-AGMTKQALD 129

Query: 150 TLFDMPNYNCWPSVKTFNFVLNLLVSAKMFDVVHEVYMGAP-KLGIEIDACCLNILVKGL 209
           T F+M  Y C  SVK+FN  L +L        + E    AP K GI+IDA   NI +K  
Sbjct: 130 TFFNMDLYGCKRSVKSFNAALQVLSFNPDLHTIWEFLHDAPSKYGIDIDAVSFNIAIKSF 189

Query: 210 CQSGNLDAALKVLDEFPQQRCRPNVRT 236
           C+ G LD A   + E  +    P+V T
Sbjct: 190 CELGILDGAYMAMREMEKSGLTPDVVT 214

[Close]

BLAST of CsGy4G020780 vs. TrEMBL
Match: tr|A0A0A0KZE4|A0A0A0KZE4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G621180 PE=4 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 6.1e-131
Identity = 411/411 (100.00%), Postives = 411/411 (100.00%), Query Frame = 0


Query: 1   MIRSSLRLSQLFLLNSIFSSSSPSIPLHLPSSSSSFSTSPKQPSVFPHKLSHRDWLSPNE 60
           MIRSSLRLSQLFLLNSIFSSSSPSIPLHLPSSSSSFSTSPKQPSVFPHKLSHRDWLSPNE
Sbjct: 1   MIRSSLRLSQLFLLNSIFSSSSPSIPLHLPSSSSSFSTSPKQPSVFPHKLSHRDWLSPNE 60

Query: 61  VINIIQQIQHPSSVLAFLHQWSNRKDYKPNKEIYTLVVSRLAEGRLFDDIEKVMLRIKAE 120
           VINIIQQIQHPSSVLAFLHQWSNRKDYKPNKEIYTLVVSRLAEGRLFDDIEKVMLRIKAE
Sbjct: 61  VINIIQQIQHPSSVLAFLHQWSNRKDYKPNKEIYTLVVSRLAEGRLFDDIEKVMLRIKAE 120

Query: 121 RNFRLSDEFFYHVIKIYGNVAGRLNKAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFD 180
           RNFRLSDEFFYHVIKIYGNVAGRLNKAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFD
Sbjct: 121 RNFRLSDEFFYHVIKIYGNVAGRLNKAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFD 180

Query: 181 VVHEVYMGAPKLGIEIDACCLNILVKGLCQSGNLDAALKVLDEFPQQRCRPNVRTXXXXX 240
           VVHEVYMGAPKLGIEIDACCLNILVKGLCQSGNLDAALKVLDEFPQQRCRPNVRTXXXXX
Sbjct: 181 VVHEVYMGAPKLGIEIDACCLNILVKGLCQSGNLDAALKVLDEFPQQRCRPNVRTXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXRCMLSGNEECIDITDEVFEKFVLLAKEDGAA 412
           XXXXXXXXXXXXXXXXXXXXRCMLSGNEECIDITDEVFEKFVLLAKEDGAA
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXRCMLSGNEECIDITDEVFEKFVLLAKEDGAA 411

[Close]

BLAST of CsGy4G020780 vs. TrEMBL
Match: tr|A0A1S3CJT2|A0A1S3CJT2_CUCME (pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103501764 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 6.6e-125
Identity = 228/235 (97.02%), Postives = 231/235 (98.30%), Query Frame = 0


Query: 1   MIRSSLRLSQLFLLNSIFSSSSPSIPLHLPSSSSSFSTSPKQPSVFPHKLSHRDWLSPNE 60
           MIRSSLRLSQL LLNSIFSSSSPSIPLHLPSSSSSFSTSPKQPSVF HKLSHRDWLSPNE
Sbjct: 1   MIRSSLRLSQLSLLNSIFSSSSPSIPLHLPSSSSSFSTSPKQPSVFSHKLSHRDWLSPNE 60

Query: 61  VINIIQQIQHPSSVLAFLHQWSNRKDYKPNKEIYTLVVSRLAEGRLFDDIEKVMLRIKAE 120
           VI IIQQIQHPSSVLAFLHQWSNRKDYKPNKEIYTL+VSRLAEGRLFDDIEKVMLRIKAE
Sbjct: 61  VIKIIQQIQHPSSVLAFLHQWSNRKDYKPNKEIYTLIVSRLAEGRLFDDIEKVMLRIKAE 120

Query: 121 RNFRLSDEFFYHVIKIYGNVAGRLNKAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFD 180
           RNFRLSDEFFYHVIKIYGNVAGRL+KAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFD
Sbjct: 121 RNFRLSDEFFYHVIKIYGNVAGRLSKAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFD 180

Query: 181 VVHEVYMGAPKLGIEIDACCLNILVKGLCQSGNLDAALKVLDEFPQQRCRPNVRT 236
           VVHEVYMGAPKLGIEIDACCLNILVKGLCQSGNLDAA K+LDEFPQQRCRPNVRT
Sbjct: 181 VVHEVYMGAPKLGIEIDACCLNILVKGLCQSGNLDAAFKLLDEFPQQRCRPNVRT 235

[Close]

BLAST of CsGy4G020780 vs. TrEMBL
Match: tr|A0A2P4H474|A0A2P4H474_QUESU (Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_55848 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 3.8e-72
Identity = 143/223 (64.13%), Postives = 176/223 (78.92%), Query Frame = 0


Query: 15  NSIFSS-SSPSIPLHLPSSSSSFSTSPKQPSVFPHKLSHRDWLSPNEVINIIQQIQHPSS 74
           N+IF S S+ S  +  P   +     P Q S   +KL H+DWL+P EV+ I   I++P+S
Sbjct: 14  NAIFHSLSTQSTTIQTPYRKTPI---PPQDSDTLNKLDHKDWLAPCEVLKITSAIKNPTS 73

Query: 75  VLAFLHQWSNRKDYKPNKEIYTLVVSRLAEGRLFDDIEKVMLRIKAERN-FRLSDEFFYH 134
           ++ FL Q+S RKDYKPN+ +YTLV+++LA+  +FD I+ VM RI AER+  RLSDEFFY+
Sbjct: 74  LITFLDQYSKRKDYKPNEALYTLVINKLAQANMFDAIDYVMQRINAERHCCRLSDEFFYN 133

Query: 135 VIKIYGNVAGRLNKAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFDVVHEVYMGAPKL 194
           VIKIYGNVA R +KAIDTLFDMP YNCWPSVKTFNFVLN+LVSAK+FDVVH+VYM AP+L
Sbjct: 134 VIKIYGNVACRTSKAIDTLFDMPKYNCWPSVKTFNFVLNMLVSAKLFDVVHDVYMRAPQL 193

Query: 195 GIEIDACCLNILVKGLCQSGNLDAALKVLDEFPQQRCRPNVRT 236
           GIEIDACCLNIL+KGLC+ G L+AA  VLDEFP+QR RPNVRT
Sbjct: 194 GIEIDACCLNILIKGLCECGKLEAAFYVLDEFPKQRLRPNVRT 233

[Close]

BLAST of CsGy4G020780 vs. TrEMBL
Match: tr|A0A2I4F0D2|A0A2I4F0D2_9ROSI (pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Juglans regia OX=51240 GN=LOC108994380 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 6.4e-72
Identity = 145/247 (58.70%), Postives = 189/247 (76.52%), Query Frame = 0


Query: 3   RSSLRLSQLFLLNSIFSS--SSPSIPLHLPS-------SSSSFST-----SPKQPSVFPH 62
           RS   L+     ++IF+S    P+I +  PS       SSSSFS+      P Q S   +
Sbjct: 4   RSLFSLNTTKARHAIFASLLPRPTIIIRTPSSSTVLLPSSSSFSSISSCPVPPQDSHTLN 63

Query: 63  KLSHRDWLSPNEVINIIQQIQHPSSVLAFLHQWSNRKDYKPNKEIYTLVVSRLAEGRLFD 122
           +L+ +DWL+ NEV+  I+ ++ PSSV+ FL +++ RKDYKPN+ +YTLVV +LA+G++FD
Sbjct: 64  RLNQKDWLATNEVLKFIEALEDPSSVITFLDRYAKRKDYKPNEALYTLVVDKLAQGKMFD 123

Query: 123 DIEKVMLRIKAERN-FRLSDEFFYHVIKIYGNVAGRLNKAIDTLFDMPNYNCWPSVKTFN 182
            IE VM RIKA ++  RLS++FFY+VI++YGNVAGR++KAI TLFDMPNYNCWP+V+TFN
Sbjct: 124 AIEDVMHRIKAPKHRCRLSEDFFYNVIRVYGNVAGRVSKAIGTLFDMPNYNCWPAVRTFN 183

Query: 183 FVLNLLVSAKMFDVVHEVYMGAPKLGIEIDACCLNILVKGLCQSGNLDAALKVLDEFPQQ 235
           F LNLLVSAK FD+VHEVYMGAPKLG+EIDACCLNIL+KGLC+ G L+ A  VLDEFP+Q
Sbjct: 184 FALNLLVSAKQFDLVHEVYMGAPKLGVEIDACCLNILIKGLCECGKLEDAFYVLDEFPKQ 243

[Close]

BLAST of CsGy4G020780 vs. TrEMBL
Match: tr|A0A1Q3CEZ4|A0A1Q3CEZ4_CEPFO (PPR_1 domain-containing protein/PPR_2 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_22153 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.1e-68
Identity = 117/188 (62.23%), Postives = 158/188 (84.04%), Query Frame = 0


Query: 48  HKLSHRDWLSPNEVINIIQQIQHPSSVLAFLHQWSNRKDYKPNKEIYTLVVSRLAEGRLF 107
           HKL H+DWLSPN+++ I + ++ P+S++   +Q+ NRKDY+P + ++TLV+++LA    F
Sbjct: 5   HKLDHKDWLSPNDILKIFENLKDPNSIIPVFNQYYNRKDYRPTELLFTLVINKLAHANNF 64

Query: 108 DDIEKVMLRIKAERNFRLSDEFFYHVIKIYGNVAGRLNKAIDTLFDMPNYNCWPSVKTFN 167
           D I+ +M  IK ++  RLSD+FFY+VIKIYG++AGR+N+AI+TL+DMP+YNCWPSVKTFN
Sbjct: 65  DAIDSLMQTIKLQKCCRLSDDFFYNVIKIYGHLAGRINRAIETLYDMPSYNCWPSVKTFN 124

Query: 168 FVLNLLVSAKMFDVVHEVYMGAPKLGIEIDACCLNILVKGLCQSGNLDAALKVLDEFPQQ 227
           FVLNLLV +K FDVV++VY+ AP LG+EID CCLNIL+KGLC+SGNL AA  VLDEFP+Q
Sbjct: 125 FVLNLLVCSKFFDVVYKVYLQAPVLGVEIDTCCLNILIKGLCESGNLSAAFYVLDEFPKQ 184

Query: 228 RCRPNVRT 236
           RC+PNVRT
Sbjct: 185 RCKPNVRT 192

The following BLAST results are available for this feature:

BLAST of CsGy4G020780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146072.1	9.3e-131	100.00	PREDICTED: pentatricopeptide repeat-containing protein At3g14580, mitochondrial ...	[more]
XP_008463670.1	9.9e-125	97.02	PREDICTED: pentatricopeptide repeat-containing protein At3g14580, mitochondrial ...	[more]
XP_022935997.1	6.3e-95	90.86	pentatricopeptide repeat-containing protein At3g14580, mitochondrial [Cucurbita ...	[more]
XP_022133930.1	2.8e-87	73.80	pentatricopeptide repeat-containing protein At3g14580, mitochondrial [Momordica ...	[more]
XP_023536209.1	2.8e-87	91.33	pentatricopeptide repeat-containing protein At3g14580, mitochondrial [Cucurbita ...	[more]

BLAST of CsGy4G020780 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G14580.1	2.6e-66	52.07	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G16420.1	5.4e-16	27.49	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT2G38420.1	2.7e-15	28.89	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G53330.1	1.7e-14	30.15	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G80150.1	6.6e-14	35.37	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CsGy4G020780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LUD6\|PP230_ARATH	4.6e-65	52.07	Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidop...	[more]
sp\|Q9FFE3\|PP388_ARATH	9.8e-15	27.49	Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidop...	[more]
sp\|Q8L6Y7\|PP193_ARATH	4.8e-14	28.89	Pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Arabidop...	[more]
sp\|Q9MAG8\|PPR79_ARATH	3.1e-13	30.15	Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis th...	[more]
sp\|Q8GW57\|PP134_ARATH	1.2e-12	35.37	Pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Arabidop...	[more]

BLAST of CsGy4G020780 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZE4\|A0A0A0KZE4_CUCSA	6.1e-131	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G621180 PE=4 SV=1	[more]
tr\|A0A1S3CJT2\|A0A1S3CJT2_CUCME	6.6e-125	97.02	pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Cucumis ...	[more]
tr\|A0A2P4H474\|A0A2P4H474_QUESU	3.8e-72	64.13	Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=5...	[more]
tr\|A0A2I4F0D2\|A0A2I4F0D2_9ROSI	6.4e-72	58.70	pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Juglans ...	[more]
tr\|A0A1Q3CEZ4\|A0A1Q3CEZ4_CEPFO	1.1e-68	62.23	PPR_1 domain-containing protein/PPR_2 domain-containing protein (Fragment) OS=Ce...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G020780.1	CsGy4G020780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 266..313 e-value: 1.0E-11 score: 44.7
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 339..369 e-value: 0.0041 score: 17.2
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 269..303 e-value: 1.3E-9 score: 35.6 coord: 305..337 e-value: 0.0029 score: 15.6 coord: 339..371 e-value: 7.6E-4 score: 17.5 coord: 235..268 e-value: 2.2E-9 score: 34.9 coord: 200..233 e-value: 9.8E-7 score: 26.6
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 193..223 e-value: 4.3E-8 score: 32.6 coord: 228..260 e-value: 7.7E-12 score: 44.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 126..161 score: 6.38
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 302..336 score: 9.284
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 337..371 score: 10.063
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 197..231 score: 10.797
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 267..301 score: 12.463
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 90..125 score: 5.667
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 232..266 score: 12.66
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 162..196 score: 6.785
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 41..247 e-value: 2.0E-24 score: 87.9 coord: 248..355 e-value: 6.2E-28 score: 99.3
None	No IPR available	PANTHER	PTHR24015:SF1641	SUBFAMILY NOT NAMED	coord: 59..387
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 59..387

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G020780	Cla023287	Watermelon (97103) v1	cgybwmB326
CsGy4G020780	Csa4G621180	Cucumber (Chinese Long) v2	cgybcuB166
CsGy4G020780	MELO3C025593	Melon (DHL92) v3.5.1	cgybmeB275
CsGy4G020780	ClCG11G016990	Watermelon (Charleston Gray)	cgybwcgB259
CsGy4G020780	CSPI04G22250	Wild cucumber (PI 183967)	cgybcpiB169
CsGy4G020780	Lsi04G019510	Bottle gourd (USVL1VR-Ls)	cgyblsiB263
CsGy4G020780	Cp4.1LG06g05410	Cucurbita pepo (Zucchini)	cgybcpeB566
CsGy4G020780	MELO3C025593.2	Melon (DHL92) v3.6.1	cgybmedB273
CsGy4G020780	CsaV3_4G032620	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G020780	Cla97C11G222990	Watermelon (97103) v2	cgybwmbB265
CsGy4G020780	Bhi09G002933	Wax gourd	cgybwgoB398

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G020780	Watermelon (97103) v2	cgybwmbB269
CsGy4G020780	Cucurbita maxima (Rimu)	cgybcmaB470
CsGy4G020780	Cucurbita maxima (Rimu)	cgybcmaB515
CsGy4G020780	Cucurbita moschata (Rifu)	cgybcmoB437
CsGy4G020780	Cucurbita moschata (Rifu)	cgybcmoB484
CsGy4G020780	Cucurbita pepo (Zucchini)	cgybcpeB540
CsGy4G020780	Silver-seed gourd	carcgybB0323
CsGy4G020780	Silver-seed gourd	carcgybB0634