CsGy4G020520 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G020520
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Gamma aminobutyrate transaminase 1, mitochondrial
Location	Chr4 : 27391113 .. 27393612 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTCAATCATCTTCTTCAAATGATTATCAAACCAAAGGTAAGAGATCATCACTACCCTTTTCAAGTTTGTTCATCTCCATTTTCTTCTGCTTTTTTTTTTTTGACTCATTAATCATCTGTTTGTTTTGTACAGCCTTTATCTTTCTCATCTATTGGAGTTCTTATGTTTATGGTGTTTTCTAATTGTGGGTTGTTGTGTTTTGTAGTTAGAGATTTTAATTTTATTTTTGGCTCAAGGGTTTTATTATTGGATATTTCATCTTGCTGGGGTGACTTATCTTGTGTTTATTATCTGCCCCCAAAACCAAAACTATGAGTTCCTACTCCCTGAAATAAATTCATTCACAAGGGTCAACTCTAATAAACAGTGAATAATGTAACATTTTTGACCTAGTACAAGCACAAGGGAGGAAGAGTCATAGCATGTGAGAGATAAAAAATAAAAAATAACAAAACAAACCCTTGAAGTTGATCGATCATTTTATGCACTATGACTCTTCCCATGCACTACGGATGAGCACCCAATAGTCTCTTACATGCTATGTCTCTTCCTACCTTGTGCTCGTACTACTCTTTGCTCTCTCACTTGCTCTCGTCGCTAAAGGCATTGGCAAGTGGTATCAGTATATGACATAAACAAAATGTTGTTGTTATTATTGTTCTATGTTTTCAAAATCTGGGGCAAATGGTATTTTAAGAGTGAATTTTGGATCAAAACGCGAGAACTTAAGCCTGCTTTGGGCAGTGGGATGTAAGTGTAACTATGAAAGCAAGTTTTAGAATGTACCTTGTATAGCATACTTGTTTTCCCTGATTTGCAAGTTCTTGGAAAGTTTAATGTTATTATCATTGACATCTAAATCATTTCCAGCTTGGTTCATGTGCAGAAGATGTTGCTGGTTTTAGAACTTGTGAGCGGCTTGTTCAGGTTCGATCCCTTTCTCACCCTTTTTTGGTAGGGAAGCAACAACGCAAAGCAATAATTCGACTACTAATTAAAGAATTCATCAAAGGTAACTTGGTGACAAATGCCTTCCTTTCAAAATCCCCTCCATGTATGTTCATCCATTTCATAGCATTTTTAATTTGATAATATATGCAATATAATCTCCCATATTAGCATTTTTAATTTTTAATTTTAATATATGCAATATTGGCTGTGTTATAATCACTTTATTTTTCAATATTCATGAGTACATGAACCAACTTGGATGTAATTTGACTAATTACACAAGACAACTACCTAAGTTAATATATTACCGTCTTTATAATGCTAAATGTGGCACTGATATGCTAGGCGAAACCGAGGAAAGAGAGTTCTCGTAAAGATTAGCCAACAATTTAGAGAATCTTATTCTCACACGAAACAGTAATGTCATAGAACCTGACTTGAATGTTCAAATATTTGACATATGCAAATATTTCTTTAGTATTTCTAACCTTTGTTTCTTTCAGATTGCTGCCTTTGTTGCAGAACCTGTCATGGGAGCAGGTGGTGTGATATTTCCTAATGCAACTTATTTTGACAAAAGTAAGCGTCACTTTCTTTCTTTATATGCATAATCATGAGTGCTTTTAGAGGTCCAATTCTTTAAAATAAAAGAAAAGAAGAAAGAGTTGAAATTATTCCCTAGATTTTAATGTCATCTGTAGATCCCAAGCTGTGTGCTGAAGAAATATGAAATTATTTTCATTGCAGATGAGATAATACAAAATGATATTACTTAGCTAGCCTCCATACCCTTCACTTCTCTTACTTAGTGCCTTGTAATCTCTTCCATGCCATAGATTATTTGTGCTTTTGGAAGACTCGAGACGATGTTCGGATGTGATAAATACAATATCAAGCCAGACTTGGTTTCAATAGCCGAAGACGTTGGGATAATTTCAAGAACTGAGACAAAAGAAGATATTTTTTGTAATGCTTGTCTTTTGTGCTGAGTTCTGTAGACTCTTTCTTCTGCATATTTAACCCATTAGTGCTGTGCTTGTGAGTCCTAAAGTATCAGATGTCATACACTCTCAAACTAATAAGCTTGCTATCCCTTTTTTAGTACTCACAATTATACATCGAACCTTCAACCTCTAGATAGAAAGGTTATGTTAATTATTATTGTTGAGCTAGATTCACTTTAATTTGATATGTTAGTTATGGCACAGCCGTACTGGACAAAAATATTCTCGAAAGAACAAATTGATTGTCTTTTCATTCAGGTAAATTTGTTTTGGCATTTTTAAATTTTTTCAGACATATTGCTATTTTTTAGAGGAGAAAATCAATGTAAACATGCACGGTGGTGAATGACTATTTGCATTGCTACAAGTTTATGACTAAATGAATCTTCTTTGACATCGACAAGTCCGTTGACAAGTCCATCTACTTACTACCGAAGAGCACCATAAAATTGGTTCTGGATTCGCTTTCAAAGTACTCCTAGTTTACAATTGAGCAGATACCGATGGATAGCATGATGAAGTTTGGCAAATTGAGGTAG

mRNA sequence

ATGGGATTCAATCATCTTCTTCAAATGATTATCAAACCAAAGCTTGGTTCATGTGCAGAAGATGTTGCTGGTTTTAGAACTTGTGAGCGGCTTGTTCAGGTTCGATCCCTTTCTCACCCTTTTTTGGTAGGGAAGCAACAACGCAAAGCAATAATTCGACTACTAATTAAAGAATTCATCAAAGGTAACTTGATTGCTGCCTTTGTTGCAGAACCTGTCATGGGAGCAGGTGGTGTGATATTTCCTAATGCAACTTATTTTGACAAAAAGGAGAAAATCAATATACCGATGGATAGCATGATGAAGTTTGGCAAATTGAGGTAG

Coding sequence (CDS)

ATGGGATTCAATCATCTTCTTCAAATGATTATCAAACCAAAGCTTGGTTCATGTGCAGAAGATGTTGCTGGTTTTAGAACTTGTGAGCGGCTTGTTCAGGTTCGATCCCTTTCTCACCCTTTTTTGGTAGGGAAGCAACAACGCAAAGCAATAATTCGACTACTAATTAAAGAATTCATCAAAGGTAACTTGATTGCTGCCTTTGTTGCAGAACCTGTCATGGGAGCAGGTGGTGTGATATTTCCTAATGCAACTTATTTTGACAAAAAGGAGAAAATCAATATACCGATGGATAGCATGATGAAGTTTGGCAAATTGAGGTAG

Protein sequence

MGFNHLLQMIIKPKLGSCAEDVAGFRTCERLVQVRSLSHPFLVGKQQRKAIIRLLIKEFIKGNLIAAFVAEPVMGAGGVIFPNATYFDKKEKINIPMDSMMKFGKLR

Homology

[Close]

BLAST of CsGy4G020520 vs. NCBI nr
Match: XP_022136651.1 (gamma aminobutyrate transaminase 3, chloroplastic-like [Momordica charantia])

HSP 1 Score: 69.7 bits (169), Expect = 6.8e-09
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1  MGFNHLLQMIIKPKLGSCAEDVAGFRT-CERLVQVRSLSHPF 42
          MGFNHLL+ IIKPKLGSCA+DVA FRT CERL+QV+ LS P+
Sbjct: 1  MGFNHLLRSIIKPKLGSCAKDVAAFRTSCERLIQVQLLSQPY 42

HSP 2 Score: 49.3 bits (116), Expect = 9.5e-03
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 65  IAAFVAEPVMGAGGVIFPNATYFDKKEKI 94
           IAAF+AEPVMGAGGVI P ATYFDK + +
Sbjct: 272 IAAFIAEPVMGAGGVILPPATYFDKVQAV 300

[Close]

BLAST of CsGy4G020520 vs. NCBI nr
Match: XP_022940077.1 (gamma aminobutyrate transaminase 3, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 67.0 bits (162), Expect = 4.4e-08
Identity = 29/42 (69.05%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1  MGFNHLLQMIIKPKLGSCAEDVAGFR-TCERLVQVRSLSHPF 42
          MGFNHLL+ IIKPK+GSCA+D +  R +CERL+QV+SLSHP+
Sbjct: 1  MGFNHLLRTIIKPKVGSCAKDASAHRNSCERLIQVQSLSHPY 42

HSP 2 Score: 49.3 bits (116), Expect = 9.5e-03
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 65  IAAFVAEPVMGAGGVIFPNATYFDKKEKI 94
           IAAF+AEPVMGAGGVI P ATYFDK + +
Sbjct: 272 IAAFIAEPVMGAGGVILPPATYFDKVQAV 300

[Close]

BLAST of CsGy4G020520 vs. NCBI nr
Match: XP_023523695.1 (gamma aminobutyrate transaminase 3, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.5 bits (153), Expect = 4.9e-07
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 1  MGFNHLLQMIIKPKLGSCAEDVAGFR-TCERLVQVRSLSHPF 42
          MGFNHLL+ IIKPK+GS A+D +  R +CERL+QV+SLSHP+
Sbjct: 1  MGFNHLLRTIIKPKVGSSAKDASALRNSCERLIQVQSLSHPY 42

HSP 2 Score: 49.3 bits (116), Expect = 9.5e-03
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 65  IAAFVAEPVMGAGGVIFPNATYFDKKEKI 94
           IAAF+AEPVMGAGGVI P ATYFDK + +
Sbjct: 272 IAAFIAEPVMGAGGVILPPATYFDKVQAV 300

[Close]

BLAST of CsGy4G020520 vs. NCBI nr
Match: XP_008464679.1 (PREDICTED: LOW QUALITY PROTEIN: gamma aminobutyrate transaminase 2-like [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 6.0e-05
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 1  MGFNHLLQMIIKPKLGSCAEDVAGFRTC-ERLVQVRSLSHPF 42
          MGFN LL++I  PKLGSCA+DVA FRT  ERL+QV+ LS  +
Sbjct: 1  MGFNQLLRVITNPKLGSCAKDVAAFRTSGERLIQVQLLSQQY 42

[Close]

BLAST of CsGy4G020520 vs. NCBI nr
Match: XP_022936192.1 (gamma aminobutyrate transaminase 2-like [Cucurbita moschata] >XP_023536072.1 gamma aminobutyrate transaminase 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 55.8 bits (133), Expect = 1.0e-04
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 1  MGFNHLLQMIIKPKLGSCAEDVAGFRT-CERLVQVRSLSHPF 42
          MGFNHLL+ IIK KLGS A+DVA FRT  ERL Q++ L+ P+
Sbjct: 1  MGFNHLLRTIIKHKLGSSAKDVAAFRTSSERLAQIQLLTQPY 42

[Close]

BLAST of CsGy4G020520 vs. TAIR10
Match: AT3G22200.2 (Pyridoxal phosphate (PLP)-dependent transferases superfamily protein)

HSP 1 Score: 45.4 bits (106), Expect = 2.5e-05
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 54  LLIKEFIKGNLIAAFVAEPVMGAGGVIFPNATYFDKKEKI 94
           L+IKE      I AF+AEPVMGAGGVI P ATYF+K + +
Sbjct: 259 LIIKE--GPETIGAFIAEPVMGAGGVIPPPATYFEKVQAV 296

[Close]

BLAST of CsGy4G020520 vs. Swiss-Prot
Match: sp|Q84P54|GATP1_SOLLC (Gamma aminobutyrate transaminase 1, mitochondrial OS=Solanum lycopersicum OX=4081 GN=GABA-TP1 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 65  IAAFVAEPVMGAGGVIFPNATYFDKKEKI 94
           IAAF+AEPVMGAGGVI P ATYFDK + +
Sbjct: 273 IAAFIAEPVMGAGGVIPPPATYFDKIQAV 301

[Close]

BLAST of CsGy4G020520 vs. Swiss-Prot
Match: sp|Q84P52|GATP3_SOLLC (Gamma aminobutyrate transaminase 3, chloroplastic OS=Solanum lycopersicum OX=4081 GN=GABA-TP3 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.0e-04
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 65  IAAFVAEPVMGAGGVIFPNATYFDKKEKI 94
           IAAF+AEPVMGAGGVI P ATYF+K + I
Sbjct: 273 IAAFIAEPVMGAGGVIPPPATYFEKVQAI 301

[Close]

BLAST of CsGy4G020520 vs. Swiss-Prot
Match: sp|Q94CE5|GATP_ARATH (Gamma-aminobutyrate transaminase POP2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=POP2 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.5e-04
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 54  LLIKEFIKGNLIAAFVAEPVMGAGGVIFPNATYFDKKEKI 94
           L+IKE      I AF+AEPVMGAGGVI P ATYF+K + +
Sbjct: 250 LIIKE--GPETIGAFIAEPVMGAGGVIPPPATYFEKVQAV 287

[Close]

BLAST of CsGy4G020520 vs. Swiss-Prot
Match: sp|Q01K11|GATP1_ORYSI (Gamma-aminobutyrate transaminase 1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=OsI_17385 PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.7e-04
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 65  IAAFVAEPVMGAGGVIFPNATYFDKKEKI 94
           IAAF+AEPVMGAGGVI P  TYF+K + I
Sbjct: 272 IAAFIAEPVMGAGGVIPPPKTYFEKVQAI 300

[Close]

BLAST of CsGy4G020520 vs. Swiss-Prot
Match: sp|Q7XN11|GATP1_ORYSJ (Gamma-aminobutyrate transaminase 1, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=OSL2 PE=1 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 7.7e-04
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 65  IAAFVAEPVMGAGGVIFPNATYFDKKEKI 94
           IAAF+AEPVMGAGGVI P  TYF+K + I
Sbjct: 272 IAAFIAEPVMGAGGVIPPPKTYFEKVQAI 300

[Close]

BLAST of CsGy4G020520 vs. TrEMBL
Match: tr|A0A1S3CM58|A0A1S3CM58_CUCME (LOW QUALITY PROTEIN: gamma aminobutyrate transaminase 2-like OS=Cucumis melo OX=3656 GN=LOC103502504 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.9e-05
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 1  MGFNHLLQMIIKPKLGSCAEDVAGFRTC-ERLVQVRSLSHPF 42
          MGFN LL++I  PKLGSCA+DVA FRT  ERL+QV+ LS  +
Sbjct: 1  MGFNQLLRVITNPKLGSCAKDVAAFRTSGERLIQVQLLSQQY 42

[Close]

BLAST of CsGy4G020520 vs. TrEMBL
Match: tr|A0A0A0KZU3|A0A0A0KZU3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G618430 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.0e-04
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 1  MGFNHLLQMIIKPKLGSCAEDVAGFRTC-ERLVQVRSLSHPF 42
          MGFN LL++I  PKLGSCA+DVA  RT  ERL+QV+ LS  +
Sbjct: 1  MGFNQLLRVITNPKLGSCAKDVAALRTSGERLIQVQLLSQQY 42

[Close]

BLAST of CsGy4G020520 vs. TrEMBL
Match: tr|A0A1D6DZK7|A0A1D6DZK7_MAIZE (Adenosylmethionine aminotransferase1 OS=Zea mays OX=4577 GN=103645944 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.7e-04
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 58  EFIKGNLIAAFVAEPVMGAGGVIFPNATYFDKKEKI 94
           EF+   LIAAF+AEPVMGAGGVI P  TYFDK + I
Sbjct: 268 EFLSPKLIAAFIAEPVMGAGGVIPPPKTYFDKVQAI 303

[Close]

BLAST of CsGy4G020520 vs. TrEMBL
Match: tr|A0A1D6DZK6|A0A1D6DZK6_MAIZE (Adenosylmethionine aminotransferase1 OS=Zea mays OX=4577 GN=103645944 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.7e-04
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 58  EFIKGNLIAAFVAEPVMGAGGVIFPNATYFDKKEKI 94
           EF+   LIAAF+AEPVMGAGGVI P  TYFDK + I
Sbjct: 246 EFLSPKLIAAFIAEPVMGAGGVIPPPKTYFDKVQAI 281

[Close]

BLAST of CsGy4G020520 vs. TrEMBL
Match: tr|A0A1D6DZK8|A0A1D6DZK8_MAIZE (Adenosylmethionine aminotransferase1 OS=Zea mays OX=4577 GN=103645944 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.7e-04
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 58  EFIKGNLIAAFVAEPVMGAGGVIFPNATYFDKKEKI 94
           EF+   LIAAF+AEPVMGAGGVI P  TYFDK + I
Sbjct: 226 EFLSPKLIAAFIAEPVMGAGGVIPPPKTYFDKVQAI 261

The following BLAST results are available for this feature:

BLAST of CsGy4G020520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136651.1	6.8e-09	76.19	gamma aminobutyrate transaminase 3, chloroplastic-like [Momordica charantia]	[more]
XP_022940077.1	4.4e-08	69.05	gamma aminobutyrate transaminase 3, chloroplastic-like [Cucurbita moschata]	[more]
XP_023523695.1	4.9e-07	66.67	gamma aminobutyrate transaminase 3, chloroplastic-like isoform X1 [Cucurbita pep...	[more]
XP_008464679.1	6.0e-05	64.29	PREDICTED: LOW QUALITY PROTEIN: gamma aminobutyrate transaminase 2-like [Cucumis...	[more]
XP_022936192.1	1.0e-04	64.29	gamma aminobutyrate transaminase 2-like [Cucurbita moschata] >XP_023536072.1 gam...	[more]

BLAST of CsGy4G020520 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22200.2	2.5e-05	60.00	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	[more]

BLAST of CsGy4G020520 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84P54\|GATP1_SOLLC	1.2e-04	75.86	Gamma aminobutyrate transaminase 1, mitochondrial OS=Solanum lycopersicum OX=408...	[more]
sp\|Q84P52\|GATP3_SOLLC	2.0e-04	75.86	Gamma aminobutyrate transaminase 3, chloroplastic OS=Solanum lycopersicum OX=408...	[more]
sp\|Q94CE5\|GATP_ARATH	4.5e-04	60.00	Gamma-aminobutyrate transaminase POP2, mitochondrial OS=Arabidopsis thaliana OX=...	[more]
sp\|Q01K11\|GATP1_ORYSI	7.7e-04	72.41	Gamma-aminobutyrate transaminase 1, mitochondrial OS=Oryza sativa subsp. indica ...	[more]
sp\|Q7XN11\|GATP1_ORYSJ	7.7e-04	72.41	Gamma-aminobutyrate transaminase 1, mitochondrial OS=Oryza sativa subsp. japonic...	[more]

BLAST of CsGy4G020520 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CM58\|A0A1S3CM58_CUCME	3.9e-05	64.29	LOW QUALITY PROTEIN: gamma aminobutyrate transaminase 2-like OS=Cucumis melo OX=...	[more]
tr\|A0A0A0KZU3\|A0A0A0KZU3_CUCSA	2.0e-04	61.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G618430 PE=3 SV=1	[more]
tr\|A0A1D6DZK7\|A0A1D6DZK7_MAIZE	9.7e-04	69.44	Adenosylmethionine aminotransferase1 OS=Zea mays OX=4577 GN=103645944 PE=3 SV=1	[more]
tr\|A0A1D6DZK6\|A0A1D6DZK6_MAIZE	9.7e-04	69.44	Adenosylmethionine aminotransferase1 OS=Zea mays OX=4577 GN=103645944 PE=3 SV=1	[more]
tr\|A0A1D6DZK8\|A0A1D6DZK8_MAIZE	9.7e-04	69.44	Adenosylmethionine aminotransferase1 OS=Zea mays OX=4577 GN=103645944 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0030170	pyridoxal phosphate binding
GO:0008483	transaminase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR015424	PyrdxlP-dep_Trfase
IPR015421	PyrdxlP-dep_Trfase_major
IPR005814	Aminotrans_3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0008483	transaminase activity
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G020520.1	CsGy4G020520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005814	Aminotransferase class-III	PFAM	PF00202	Aminotran_3	coord: 48..93 e-value: 1.9E-5 score: 23.5
IPR015421	Pyridoxal phosphate-dependent transferase, major domain	GENE3D	G3DSA:3.40.640.10		coord: 61..92 e-value: 3.1E-6 score: 27.9
IPR015424	Pyridoxal phosphate-dependent transferase	SUPERFAMILY	SSF53383	PLP-dependent transferases	coord: 52..89

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G020520	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G020520	Cucumber (Chinese Long) v3	cgybcucB176
CsGy4G020520	Watermelon (97103) v2	cgybwmbB265
CsGy4G020520	Wax gourd	cgybwgoB398
CsGy4G020520	Cucumber (Gy14) v2	cgybcgybB121
CsGy4G020520	Cucurbita maxima (Rimu)	cgybcmaB470
CsGy4G020520	Cucurbita maxima (Rimu)	cgybcmaB505
CsGy4G020520	Cucurbita moschata (Rifu)	cgybcmoB437
CsGy4G020520	Cucurbita moschata (Rifu)	cgybcmoB477
CsGy4G020520	Cucurbita pepo (Zucchini)	cgybcpeB540
CsGy4G020520	Cucurbita pepo (Zucchini)	cgybcpeB547
CsGy4G020520	Cucurbita pepo (Zucchini)	cgybcpeB566
CsGy4G020520	Cucumber (Chinese Long) v2	cgybcuB166
CsGy4G020520	Cucumber (Chinese Long) v2	cgybcuB175
CsGy4G020520	Bottle gourd (USVL1VR-Ls)	cgyblsiB263
CsGy4G020520	Melon (DHL92) v3.6.1	cgybmedB255
CsGy4G020520	Watermelon (Charleston Gray)	cgybwcgB259
CsGy4G020520	Watermelon (97103) v1	cgybwmB326
CsGy4G020520	Wild cucumber (PI 183967)	cgybcpiB169
CsGy4G020520	Wild cucumber (PI 183967)	cgybcpiB177
CsGy4G020520	Silver-seed gourd	carcgybB0636