CsGy4G019850 (gene) Cucumber (Gy14) v2

NameCsGy4G019850
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUnknown Protein
LocationChr4 : 26673307 .. 26674301 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCTCTTCCTCAAGTAAAGGAGAAAATTTTCTTATGGAAAATTAAGGTCATCTCGAAAGGAAAGATTTGTGTGTGGAAGATTATTAATAACTCAATTCCAACCCATGCCAATATTCAGAATAGAGGAATCGATACTAAAACTTGTTATTTGTTTCACAGGAACTCAAAAGAGTGTTATAGCCATGCTATGTGGTTGTGTAAGTTCTCTAAAAAAGTGTAGCATTAATGCTTTCGGATCTTTTTTTTATTCCTTTGGTGCTTGCCGGGAATAAAGGTCTACTTTGGATCTTTGGACATGGACCCTAAACTTGTTGAGGGTTGAGGATATCTTTTGAAGATTGTTATTATTTCGTACAAATATTATCTTCTTAATTCGAGAGCTCGTGACAAGAATTAACAAATATTCAATCTCATTAACAATTACTTTCCTTCCTCCTTAAGTGGTATCAATGTGTTTTCTAATTCAGTGATATTCGAGAACTCGAACCATGTGAGTCAGGAGAGGCAGTCTCCTCATCCGAGTGAATTTTGGAAGCTCCATGTTGACGCCTTTTGATGCAACAAAAGAAGAATTGATGATTTAAGATGGGTTGTTTGTGACTCAAGAATCTCCTGTATGCGTTGGATATAGGCGATTTTAATATGGATGACCCATCAGAGCTTTGGAAGGAAAGGCTATCAGTTTTGGTCTATGTTCTCTTCTCTAACTTAGGAAAAGAGTCAATGTAACCCTTGGTTGTAGAATCTGATTATACAGAGATCTTTAGTGCTCTAAGTGAGTCATTTATTGATATCTCATCTACGAAAAAGAATGATTTTTGCTTTTGTGTTATGTTTTAGATTTTACTCTTTTGTTATGTGTACTCGTCATAGTAACTTGATTGTTCACATTCTAACGTGTTGCAACTAAGTTTCTTTTCTTCCGTTCTCAAGAGACTAGTTTGTTTTCCTCAGACCTTAGCTGAGTGTCCTATGCCCTCAAAGAGATGA

mRNA sequence

ATGGATCCTCTTCCTCAAGTAAAGGAGAAAATTTTCTTATGGAAAATTAAGGTCATCTCGAAAGGAAAGATTTGTGTGTGGAAGATTATTAATAACTCAATTCCAACCCATGCCAATATTCAGAATAGAGGAATCGATACTAAAACTTGTTATTTGTTTCACAGGAACTCAAAAGAGTGTTATAGCCATGCTATGTGGTTGTAATCTGATTATACAGAGATCTTTAGTGCTCTAAATTTTACTCTTTTGTTATGTGTACTCGTCATAACCTTAGCTGAGTGTCCTATGCCCTCAAAGAGATGA

Coding sequence (CDS)

ATGGATCCTCTTCCTCAAGTAAAGGAGAAAATTTTCTTATGGAAAATTAAGGTCATCTCGAAAGGAAAGATTTGTGTGTGGAAGATTATTAATAACTCAATTCCAACCCATGCCAATATTCAGAATAGAGGAATCGATACTAAAACTTGTTATTTGTTTCACAGGAACTCAAAAGAGTGTTATAGCCATGCTATGTGGTTGTAA

Protein sequence

MDPLPQVKEKIFLWKIKVISKGKICVWKIINNSIPTHANIQNRGIDTKTCYLFHRNSKECYSHAMWL
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026960RVT-Znf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G019850.1CsGy4G019850.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 8..65
e-value: 1.5E-9
score: 38.3