CsGy4G018620 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G018620
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	23 kDa jasmonate-induced protein
Location	Chr4 : 24198820 .. 24199851 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGTGTTTGGCAATCCGATCACTGATGAAACTCTAAAAGGCATGCCTGAATATGAAGGAAAGACAATAAGACGTCCAGATAGAGCACATGTACTCGCACTTGGATAAAGATAAAAATGCTCCAGAGATTATGTGGAAGGATTGAAAAAACAATGGGGAACTGGAGTCTCCACTCTTCGCTTAATTTACAATGCTACTGGCGATCCCATAGATTTTGTTACCGATCATAGTTGGCATGGTCATATTGGACCTGGTCCTTATCCAACTCGGATTGAAAATGGTCAATGGGGTGGCTTCCTTCATGTCAAAACTTCCGGAACAGCCACAGGTTCTTCTGCTGCTGTCGTATATCGTGGTGTAAATAATAATGGCCAACATTGCGATTGGATGGCAGCATGGTCCAACCCTTGGAATCGATCGACTTCCGACAATACGGTCAGCAAAATTGATAGTTTTTCTTTTCCATTTCATTTGCTTTCCTAACTTTTTAAACTTTTATTTTAGTTTTTGAATCTGTAGAAATGAAATTTAAATTATTAAAAAAATGAGATAGCAGTAAAGTGAACAAAACAACAATTTCATTTGCTTCCTAAACCCTTTTTTGTAGATATATATATTTTGAAGTTCATGTATTGTTGTGTTTTGTAGGCATATACTGAGATACGAGAAGAAGGACATTATACGACGAAGGACAATTGGAATTACATCTCTAATTTATTATATGAATCGGGTGTTTCTGATTCAGACAGCAGGAATGGGTGTGTATCAGATGTAATCACAGGAAGTGATAACAGTCCCATATTTGAAGGAATATTTACTCTTGCAAATGCTTAATGCTTCTCTTCATGTGCACCTTTGAAAATTTATGTTTGATCATATACTTACAAATAAGTTCCGTACTCATAAATAATTAATGGAGAAAAATGCAGTTAATATATAATCTTGGTGAGCATGTTCATAAATAAAGTGCTCTTATCATTTCAGCTCCACCTCCATTATTCCCTTATCTGTCATCAACTACTCTGCAAAATC

mRNA sequence

AATGTGTTTGGCAATCCGATCACTGATGAAACTCTAAAAGGCATGCCTGAATATGAAGGAAAGACAATAAGACGTCCAGATAGAGCACATGTACTCGCACTTGGATAAAGATAAAAATGCTCCAGAGATTATGTGGAAGGATTGAAAAAACAATGGGGAACTGGAGTCTCCACTCTTCGCTTAATTTACAATGCTACTGGCGATCCCATAGATTTTGTTACCGATCATAGTTGGCATGGTCATATTGGACCTGGTCCTTATCCAACTCGGATTGAAAATGGTCAATGGGGTGGCTTCCTTCATGTCAAAACTTCCGGAACAGCCACAGGTTCTTCTGCTGCTGTCGTATATCGTGGTGTAAATAATAATGGCCAACATTGCGATTGGATGGCAGCATGGTCCAACCCTTGGAATCGATCGACTTCCGACAATACGGCATATACTGAGATACGAGAAGAAGGACATTATACGACGAAGGACAATTGGAATTACATCTCTAATTTATTATATGAATCGGGTGTTTCTGATTCAGACAGCAGGAATGGGTGTGTATCAGATGTAATCACAGGAAGTGATAACAGTCCCATATTTGAAGGAATATTTACTCTTGCAAATGCTTAATGCTTCTCTTCATGTGCACCTTTGAAAATTTATGTTTGATCATATACTTACAAATAAGTTCCGTACTCATAAATAATTAATGGAGAAAAATGCAGTTAATATATAATCTTGGTGAGCATGTTCATAAATAAAGTGCTCTTATCATTTCAGCTCCACCTCCATTATTCCCTTATCTGTCATCAACTACTCTGCAAAATC

Coding sequence (CDS)

ATGGCAGCATGGTCCAACCCTTGGAATCGATCGACTTCCGACAATACGGCATATACTGAGATACGAGAAGAAGGACATTATACGACGAAGGACAATTGGAATTACATCTCTAATTTATTATATGAATCGGGTGTTTCTGATTCAGACAGCAGGAATGGGTGTGTATCAGATGTAATCACAGGAAGTGATAACAGTCCCATATTTGAAGGAATATTTACTCTTGCAAATGCTTAA

Protein sequence

MAAWSNPWNRSTSDNTAYTEIREEGHYTTKDNWNYISNLLYESGVSDSDSRNGCVSDVITGSDNSPIFEGIFTLANA

Homology

[Close]

BLAST of CsGy4G018620 vs. NCBI nr
Match: AIS71930.1 (23 kDa jasmonate-induced protein [Citrullus lanatus])

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-26
Identity = 60/77 (77.92%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1   MAAWSNPWNRSTSDNTAYTEIREEGHYTTKDNWNYISNLLYESGVSDSDSRNGCVSDVIT 60
           M AWSNPWNRS+SDNTAYTEIREEGHYT  D+WNYISNLLY+SG+S SD  N CVS+V T
Sbjct: 137 MLAWSNPWNRSSSDNTAYTEIREEGHYTKNDHWNYISNLLYDSGLSSSDKWNKCVSNVTT 196

Query: 61  GSDNSPIFEGIFTLANA 78
           GSD SPIFEGI TL +A
Sbjct: 197 GSDTSPIFEGILTLQDA 213

[Close]

BLAST of CsGy4G018620 vs. NCBI nr
Match: XP_022157068.1 (23 kDa jasmonate-induced protein-like [Momordica charantia] >XP_022157069.1 23 kDa jasmonate-induced protein-like [Momordica charantia])

HSP 1 Score: 109.0 bits (271), Expect = 7.3e-21
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1   MAAWSNPWNRSTSDNTAYTEIREEGHYTTKDNWNYISNLLYESGVSDSDSRNGCVSDVIT 60
           MAAWSNPWN ++S NTAYTEIR+EGHY  +DNWNYIS+LLY+SG++ +D  NGC S VIT
Sbjct: 137 MAAWSNPWNPASSSNTAYTEIRDEGHYEKEDNWNYISDLLYDSGITKTDIWNGCKSSVIT 196

Query: 61  GSDNSPIFEGIFTLANA 78
           G+  SP +E  FTL  A
Sbjct: 197 GNGTSPEYEATFTLDGA 213

[Close]

BLAST of CsGy4G018620 vs. NCBI nr
Match: XP_022157071.1 (23 kDa jasmonate-induced protein-like [Momordica charantia] >XP_022157072.1 23 kDa jasmonate-induced protein-like [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-20
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 1   MAAWSNPWNRSTSDNTAYTEIREEGHYTTKDNWNYISNLLYESGVSDSDSRNGCVSDVIT 60
           MAAWSNPWNR+   NTA+TEIREEGHY T+DNW+YISNL+YESG+S     NGC S VIT
Sbjct: 137 MAAWSNPWNRTFWSNTAFTEIREEGHYDTQDNWDYISNLVYESGLSKIYEWNGCKSSVIT 196

Query: 61  GSDNSPIFEGIFTLA 76
           G+  SP FE IFTL+
Sbjct: 197 GNSTSPEFETIFTLS 211

[Close]

BLAST of CsGy4G018620 vs. NCBI nr
Match: XP_008443732.1 (PREDICTED: 23 kDa jasmonate-induced protein-like [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1   MAAWSNPWNRSTSDNTAYTEIREEGHYTTKDNWNYISNLLYESGVSDSDSRNGCVSDVIT 60
           M AWSNP+ R  +DNTAYTEIRE+GHY   D+W YI +LL  S +  SD  N C S V T
Sbjct: 137 MVAWSNPYYRLFADNTAYTEIREKGHYEAHDHWEYIFDLLNNSSLIHSDEWNKCQSKVST 196

Query: 61  GSDNSPIFEGIFTLAN 77
           G+D +PIFEGI TL+N
Sbjct: 197 GNDTNPIFEGILTLSN 212

[Close]

BLAST of CsGy4G018620 vs. NCBI nr
Match: XP_010920410.1 (PREDICTED: 23 kDa jasmonate-induced protein [Elaeis guineensis] >XP_010920412.1 PREDICTED: 23 kDa jasmonate-induced protein [Elaeis guineensis])

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 44/77 (57.14%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 1   MAAWSNPWNRSTSDNTAYTEIREEGHYTTKDNWNYISNLLYESGVSDSDSRNGCVSDVIT 60
           M  WSNPWNR  +DNT YTEIRE  HY   ++WNYI + +  SG++ SD+ NGCVS V T
Sbjct: 138 MFGWSNPWNRWGNDNTVYTEIREYRHYEDNNHWNYIQDKVEGSGLTHSDTWNGCVSTVAT 197

Query: 61  GSDNSPIFEGIFTLANA 78
           GS  SPI + I TL NA
Sbjct: 198 GSSTSPILQAILTLENA 214

[Close]

BLAST of CsGy4G018620 vs. Swiss-Prot
Match: sp|P32024|JI23_HORVU (23 kDa jasmonate-induced protein OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.2e-04
Identity = 28/71 (39.44%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 3   AWSNPWNRSTSDNTAYTEIREEGHYTTKDNWNYISNL-LYESGVSDSDSRNGCVSDVITG 62
           +W+ P+      N  YTEIREEGHY +  +W+YI N+ L  S V+  DS  G VS    G
Sbjct: 139 SWTVPY---IGGNGVYTEIREEGHYPSVGSWDYIYNVKLKNSSVTSIDSNYGYVSKADIG 198

Query: 63  SDNSPIFEGIF 73
              +    G+F
Sbjct: 199 EGTTMNARGVF 206

[Close]

BLAST of CsGy4G018620 vs. TrEMBL
Match: tr|A0A097BU21|A0A097BU21_CITLA (23 kDa jasmonate-induced protein OS=Citrullus lanatus OX=3654 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-26
Identity = 60/77 (77.92%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1   MAAWSNPWNRSTSDNTAYTEIREEGHYTTKDNWNYISNLLYESGVSDSDSRNGCVSDVIT 60
           M AWSNPWNRS+SDNTAYTEIREEGHYT  D+WNYISNLLY+SG+S SD  N CVS+V T
Sbjct: 137 MLAWSNPWNRSSSDNTAYTEIREEGHYTKNDHWNYISNLLYDSGLSSSDKWNKCVSNVTT 196

Query: 61  GSDNSPIFEGIFTLANA 78
           GSD SPIFEGI TL +A
Sbjct: 197 GSDTSPIFEGILTLQDA 213

[Close]

BLAST of CsGy4G018620 vs. TrEMBL
Match: tr|A0A1S3B9I3|A0A1S3B9I3_CUCME (23 kDa jasmonate-induced protein-like OS=Cucumis melo OX=3656 GN=LOC103487248 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.0e-16
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1   MAAWSNPWNRSTSDNTAYTEIREEGHYTTKDNWNYISNLLYESGVSDSDSRNGCVSDVIT 60
           M AWSNP+ R  +DNTAYTEIRE+GHY   D+W YI +LL  S +  SD  N C S V T
Sbjct: 137 MVAWSNPYYRLFADNTAYTEIREKGHYEAHDHWEYIFDLLNNSSLIHSDEWNKCQSKVST 196

Query: 61  GSDNSPIFEGIFTLAN 77
           G+D +PIFEGI TL+N
Sbjct: 197 GNDTNPIFEGILTLSN 212

[Close]

BLAST of CsGy4G018620 vs. TrEMBL
Match: tr|A0A0A0M0F4|A0A0A0M0F4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G642550 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.3e-12
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1   MAAWSNPWNRSTSDNTAYTEIREEGHY-TTKDNWNYISNLLYESGVSDSDSRNGCVSDVI 60
           M AWSNP++R  +DN AYTEIRE+GHY    D W YI +LL  + +S  D  NGC+S+V 
Sbjct: 137 MVAWSNPYHRLFADNKAYTEIREQGHYEAPHDYWEYIFSLL--NDLSHRDKWNGCLSNVS 196

Query: 61  TGSDNSPIFEGIFTL 75
           TGSD +P+  GIFTL
Sbjct: 197 TGSDTNPLCVGIFTL 209

[Close]

BLAST of CsGy4G018620 vs. TrEMBL
Match: tr|A0A1Q3BEY1|A0A1Q3BEY1_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_09902 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.8e-07
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 1   MAAWSNPWNRSTSDNTAYTEIREEGHYTTKDNWNYISNLLYESGVSDSDSRNGCVSDVIT 60
           M AW NP   S+  N AYTEIRE  HY     W+YIS L+ +S  ++ D+  GC+S V  
Sbjct: 135 MFAWYNP---SSGPNLAYTEIREADHYANNKYWDYISGLVRKSNPTNKDTWKGCLSMVSI 194

Query: 61  GSDNSPIFEGIFTLANA 78
              ++ +FEG+ T A+A
Sbjct: 195 ARADAALFEGLLTQADA 208

[Close]

BLAST of CsGy4G018620 vs. TrEMBL
Match: tr|A0A2R6RBH3|A0A2R6RBH3_ACTCH (Jasmonate-induced protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc09428 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.7e-06
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 1   MAAWSNPWNRSTSDNTAYTEIREEGHYTTKDNWNYISNLLYESGVSDSDSRNGCVSDVIT 60
           + +W NP+N+S+ ++TAYTEI    +++   NWN IS+ L+ S +  S    GC      
Sbjct: 135 LLSWCNPYNKSSYNSTAYTEIHASDYFSGV-NWNQISDKLHASTLVHSSEWRGCKVSASM 194

Query: 61  GSDNSPIFEGIFTLANA 78
           G  +S +FEGI TL+NA
Sbjct: 195 GRMDSAVFEGIITLSNA 210

The following BLAST results are available for this feature:

BLAST of CsGy4G018620 vs. NCBI nr


Match Name	E-value	Identity	Description
AIS71930.1	2.6e-26	77.92	23 kDa jasmonate-induced protein [Citrullus lanatus]	[more]
XP_022157068.1	7.3e-21	64.94	23 kDa jasmonate-induced protein-like [Momordica charantia] >XP_022157069.1 23 k...	[more]
XP_022157071.1	1.2e-20	69.33	23 kDa jasmonate-induced protein-like [Momordica charantia] >XP_022157072.1 23 k...	[more]
XP_008443732.1	1.2e-15	59.21	PREDICTED: 23 kDa jasmonate-induced protein-like [Cucumis melo]	[more]
XP_010920410.1	1.2e-15	57.14	PREDICTED: 23 kDa jasmonate-induced protein [Elaeis guineensis] >XP_010920412.1 ...	[more]

BLAST of CsGy4G018620 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G018620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P32024\|JI23_HORVU	3.2e-04	39.44	23 kDa jasmonate-induced protein OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]

BLAST of CsGy4G018620 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A097BU21\|A0A097BU21_CITLA	1.7e-26	77.92	23 kDa jasmonate-induced protein OS=Citrullus lanatus OX=3654 PE=2 SV=1	[more]
tr\|A0A1S3B9I3\|A0A1S3B9I3_CUCME	8.0e-16	59.21	23 kDa jasmonate-induced protein-like OS=Cucumis melo OX=3656 GN=LOC103487248 PE...	[more]
tr\|A0A0A0M0F4\|A0A0A0M0F4_CUCSA	5.3e-12	56.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G642550 PE=4 SV=1	[more]
tr\|A0A1Q3BEY1\|A0A1Q3BEY1_CEPFO	8.8e-07	42.86	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_09902 PE=4...	[more]
tr\|A0A2R6RBH3\|A0A2R6RBH3_ACTCH	5.7e-06	40.26	Jasmonate-induced protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CE...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G018620.1	CsGy4G018620.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G018620	Cucurbita maxima (Rimu)	cgybcmaB530
CsGy4G018620	Cucurbita maxima (Rimu)	cgybcmaB570
CsGy4G018620	Cucurbita moschata (Rifu)	cgybcmoB511
CsGy4G018620	Cucurbita moschata (Rifu)	cgybcmoB544
CsGy4G018620	Cucurbita pepo (Zucchini)	cgybcpeB465
CsGy4G018620	Cucurbita pepo (Zucchini)	cgybcpeB525
CsGy4G018620	Cucumber (Chinese Long) v2	cgybcuB167
CsGy4G018620	Bottle gourd (USVL1VR-Ls)	cgyblsiB238
CsGy4G018620	Watermelon (Charleston Gray)	cgybwcgB283
CsGy4G018620	Watermelon (97103) v1	cgybwmB316
CsGy4G018620	Wild cucumber (PI 183967)	cgybcpiB170
CsGy4G018620	Silver-seed gourd	carcgybB0482
CsGy4G018620	Silver-seed gourd	carcgybB0521
CsGy4G018620	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G018620	Watermelon (97103) v2	cgybwmbB283
CsGy4G018620	Watermelon (97103) v2	cgybwmbB288
CsGy4G018620	Wax gourd	cgybwgoB375