CsGy4G018580 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G018580
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionPhotosystem I reaction center subunit IX
LocationChr4 : 24175076 .. 24180688 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAGATCTAAAAACATATCTCTCCGTGGCACCGGTAGTAAGTACTATATGGTTCGGGGCTTTAGCGGGTCTATTAATCGAGATCAATCGTTTATTCCCGGATGCGTTGGTATTCCCATTTTTTTCATTCTAGTTATTGACTTGGGAAGGGGTGAAGAAGATTAGAAAAACAATAAAATATCTCTCAACTTCTCCAACATGCCCTCTCAAGATGGTGCCTCTTTGGTTTCACCTATCTTGGACCGAAGACCGAATACTCGTTTGGGTTTAATGGGCTCTGATACCACATGTTAAATCACCAATTCATCCAAAAGTTTAAGCTAGTGGTTGAAGGCAAATTTAATTATTTATATATCACCAACACAAATATTTGAAAGGGCCCAACAAGTGAAAATCGATTTTTTAATTGGGGAGGAAACGATAGTGGTTGAAGGCAAATTTAATTATTTATATATCACCAACACAAATATTTGAAAGGGCCCAACAAGTGAAAATCGATTTTTTAATTGGGGAGGAAACGACAATGCAGGGGCTTGAACACAGGACCTCCCTGGATCACCTGCCTGATAGCATATTAAACCACCAATTCATCCAAAAGCTTAAGCTGGTGGTTGAAGGCAATTTTAATTATATATCACCAACACTCCCCCTCACTTGTGGGCTTGAAACATTTGAAAGGCCCAACAAGTGGAAATTGATTTAATTGGGGACGACAAGCTCTGATACCATATTAAATCACCAATTCATCCAAAAGCTTAAACTTGTGGTTGAAAGCAAATTTAATTATATATCACCAACAATAAAGATAAAAAGATCTTCCTATTTATTAGGAATCTTTTATCCAAGTTATTAATTTACTCCTAATGAAGATTTGGTTTGAAGATCTTTAAATAGTCAAGTCTTGGACTTCATTCGAAGGGTGCATTTATGAAGAAACATCAACTCTAAGGTATTCTCTCTCGACTTGTGATTTTAAGAAGGTAGATATTTTACCTTCATATTAATGAACTATTGAAGAATCTGGGACCAAGTTAGTATTTCACCTGTTTGTATATACTGCACCTGTGATAAGAAGGATGATGAAGATCATGCACTGAGAAGCAGTACACAACCAACCCAGGGGGAGTGAGTTATCTTCAATAAAGTATCAACCACATATGCAGGGAGCTTGTTTAAATTAAGTTTCAGTTTCAACTTAATTATGTAGTTTTTTTTTTTTTTTGAAGTGTTAATCTTCTAACTATAAACAAACTAGTTACTTTATTGAACCTTAATAATATTTCTTATCTGAGCAGCAAGTTCTCTGGACGTAGGTGGTATTGCCAAACTTGGTTAACAAATTCCTCTGTGTTGTTATTTACTTACGATTGTGTAAGACCCAAACTTTAGGTAGTGTAGATTTTCCAAAGAGTTTAAGAGGTTAGAAAGAAAGAAAATTTTTGGTGCAGTATCAAAGAATAGTACTTTAGGCATTTTCTAAAGGATAGAAAGCATTTTTTAGTGTTTAAGGTTGGCGAGAAAGAAGGATCGAAGAGGTTGGGCGTTCTAGCTAACTTCATAAAAGAGTTTCTCACAACTCACTTGGGCATTTATACTCAAATTGGTCTTGAAAGTTCAGAATTTGAGTCTAGTTTATTGAGGAAGGTTGCTGGGCGTTTCAGATATGAGAAAGTTGGCATTTTGGATACATAAGAGAAGGTGAGAAGGTCAGCTCGCGAGTGAATCTGGTAAGATGCTCTCCTAGAAGGCTACAGAACGCATATTTTGGTGTTTTGCTCTAAAATTTGGAGGGCAGAAAGCTAATGCAATTTAGAGAAACTTTGTGGAATGAAGTTTTATCAAAACAGTTACGAATTTTAAGTTATAACTTTCCTAAGTCGGGTTATGTAGTCTGGGCGAGAAGCTAGGCGAGATGATCTTGGAAGCTAGCTATGCGTTTTGGATATTAATGTGGCATGATTAAGGCAATTGGTTTAATGATTTAGTGAAGTTTCAAAGCCTTGTTAGCATGCGTCTTGAGTTGTAAAAGTAAGAAGGAAGTGTCTTAATAAGGTTTAAGGTGGATTTAAGCAAGGATGAGATGTCAACGTAAATTCATGCAATGGACTCTATAATTAGGTTACCTCAAATTCATTTTTCTCATACTACACCCGTGCATTTTGAATAAGATGGGGCTGCTCGTTTAATTTGAGTGACGGGAGTTTCGGTCGTAGAAAGCAAGGAAGGTCAGAATACGAATGATTTTGAACAACGTGTACTTCTAGAGGGTTGTAGAGTTCATCCATTGAAATTTGAAGCTGAAAGTTTGAGGTAAGAATATTAAGACGTGTTGCAACAAGTTTGTAGAAGAAAGTATTTTTATTTGATCAGTTCTGGATTTTAAGTTATTAAGCTCTAAAGAAGAAGTAGAGTTCTAGCCGAGAATGAGGTTTTGGGCAGTAGAGGTTAGTGGTCGAGCCTAAGAAATTAGCATGGCATGTTGGACATGCGTTTTGGATTCAAAGAGGTTTTTCGAGGCGTTTTGGGGCTGTTTTGATGATTTGAAAAATTTTAAGTAAAGTTTGATGTTTAAAATAAAAGAGAATTAATTGGAGTCGTATCCCATTATTTCATGACAAGAGGAAATGGACAAGCTTATCGCTACCACCAAGTTCAGATAGGAATAGGGTTAGAAGATGTTCAGTTTAAAGAGATGACAATAGGAATAGGGTTAGAAGATGTTCAGGTTTTTCAAGGGTATAGGGTTATGTTGACCATTTAACCGCTACCACCAAGTTCAGATAGGAATAATATGACCAAAGGTGCTATGCTATTCAAGGTTTAATTGGATAGTATGACCGAAGGTGCTCTGCTATCTTGTTTAAGTTTTTTTGGGTATTGAGTATACAAAGGTAAATGAGTATTTGAATGTTAGAAGATGTTCAGTTTAAAGATATTTCATAAAGATTATATGTTATGTTTATAAAATGTTTAAAGTATGTTTGCTTTAAAAGTCTGTTTTATAAAACCATCACTCACTGGACTTTTTAGCTCACCCTTTCAAAACGTTTTCTACTTTCCAGGTAGAGTTCGTGATTCGAGAACTTGACCGTTGTCTTCAGACTGCTGTGCGAAGTTGTTGATAGTTTAGTTATTAAGGGGTCGTTTGGGGGAATGATCAAAGGAATAAAGGAGAAAAATAAATAAGAAAAAGGGGATTAAGTCGAGGAAAGAATTATTATAATCCTTGTTTGGGGAAAGGATTAAGTGAAAGGATTCTAGAGGATTATTATAATCCTTGTTTGGAAGAAGGATTATGTGGGAAGGATTATGACAAAAAATTTGTATTTTCTTTTATTTGTACATTAACCCCAAATGAGAAAAAATACATAATTATTTTTTTCCAGGAATGAAATTATTGTTTTTTTTTTTTCGCGAACCCAATACAAAATGAAAAATGTGCTAATATTTTTTGCATTTGTATAAATTGTTCATACGGTAAAACCCTACAACCAAAAATTATATTCAAATTTATTTTTTTAGATAGGTTGTACCATAATCCAAGCGTTCACCAAAAATTTGTATTGATTTTGTATAAATATTTTTTTACTTGTAAAGTACACCTAATATACTTTCAAAAGTAAAGTTATTTATTTTGTAGTAATCTTTGTAACGTACACCTAATATAATTTGTAACGTACGCCTAATATAATTTTTTTACTTGTATTAATTTTTTTTTTTTTTTTTGCATTTGTCTAAACTTATTTATTTTGTTTGTACTATTTTCTAAAACGACGAAAAATTGTATTAAAATAATGTTTATACTTCATTTCTACTTAACCCCAACACAAAGCAAATATGTGTTAATTTTTAAATTGATTTTGTATAAAAAAATTTGGACCGTACGCATAATACACAATACAAACCAATTGTATTATTTTTTTTTTCATTTATGTAAAGTATGTTTCTTCAAATTGTACAGTAAATAGAATACACAAAGAAATTTGTATTTTAAGTTTGTATCATCAATCTTATACAATAAAAAATTATATTTTATCGATGGTTCTACCAATTTATTTTTCTTTCATTTTTAATATTTTTTCTTTCATTTATTAATTTTTTTTTCTTCATGAGAACGATAAGCAATGTACTAGAGAAGATGATTAATTTGTTTGACACACAGAGAATGAAGAAGAAGAGAGCGGGATTAATTTGTTTGAGAAATAGAAGAAATAAGATGATTAATTTGGAGAGAAGAATAAATAAATGAGGAAAAATAAGAAATAAATGAGGAAAGAGAAGAAAGAGAAGGATTATATTGGAAAATGAAAGGATTAACGGGGAAAAGTAGAGTAATAAATGAAGAAAGAGAAGGAATAAGAGGATTAAGGGCATTACTTTAATCCATGGGTCAAACAAGGAAATGATTTCCTTTCCTTTCCTTTCCTTTTCCCAAACAGTCCTTAAGGGTCAGTTTTAATCTTATCATCTACATGGTTTTGTATTAAGTTTAAGTTGTTTAATTTTTGTTTTGTCAGTAAGTAAAATTTGTAATCAATGGCATTTACCGGTTAAAAGTATAAAAGTGTTTCAAGTTGTTTCCCTTAATTTCCGCAGCATAAGTTTTAATTTACCTAAGTTGTTTAGCATTGTAAAATAGTAGTAGTTAGGGTCAATTGATGTTGTTCAGAAGAAAAATGACATCGGTTGACTTCACGCCACATCTCAGGTCGAGTAAATAGGTGCACGAGGCGGGGTGTGACAGATCGTCTTAACAGCTATTACTATAATCAATAACCTTGCACATAGGTGTGGATAGGATATTTTTTTATCTTCACATTTACTTCAAAACATTTTCAAACTGATCACATGGGTATGGTATGGGTAACTGATCGACTTTAAAATTTTCTTAGCTAAAAAACTTTAGATAAACCAAAATCACATACCTTCAAAGACTGTGGGGCAGGGCATCCATCTAAAAGGATACTATCTAGCATCGAATCTTTATTCCATGTTATTTTCTGCACAAAGCATTGTGTCAAACAAAATATGGTATTAGATTTTTAAACAAAAAGCCATATGAGGCTAAGTATTGGAGAGAAAAAACGTATTTGGATTTAAATGCAAAACTATTTACAATGCAAAATCATTTGTATAACAACATGTTCGGTCGAATGAGAAAATTAATAAAATTCTCTTATTCAAAGTCCTTGGAAAAGCCAAAATCACAGACCTTCAACTTTACGGCTAGGCTTCCATCTGAAAGGGTACTTTGTAGCAATATATTTCCTTTAAATATTTGCTGCATAAAGCATATTGTGTCAAACAAAATATAATTTGAACCTTTTAAACAAGAAGTCATCATATGAGACTTAGTATATATATGTTGCAGAACAACATTAATTTGTATTTGGTTTTGAATGCAATGTACGTAACATGGATATGACAACTTAGACAAATGGACAATACAAGCTGAGCATAAGTATAAGAACATGTTCATGATCTAAAATGAGCAAATTAATAAAAGTCATATATATATTTAAAGACCTTGAAGCAGTCAGAATCACAATTCTTCATTTCTGAGGATTTTCTTTCATGTAGAATGATTAACTTCAACTTCAAATCTCTATGA

mRNA sequence

ATGCGAGATCTAAAAACATATCTCTCCGTGGCACCGGTAGTAAGTACTATATGGTTCGGGGCTTTAGCGGGTCTATTAATCGAGATCAATCGTTTATTCCCGGATGCGTTGTCCTTGGAAAAGCCAAAATCACAGACCTTCAACTTTACGGCTAGGCTTCCATCTGAAAGGACCTTGAAGCAGTCAGAATCACAATTCTTCATTTCTGAGGATTTTCTTTCATGTAGAATGATTAACTTCAACTTCAAATCTCTATGA

Coding sequence (CDS)

ATGCGAGATCTAAAAACATATCTCTCCGTGGCACCGGTAGTAAGTACTATATGGTTCGGGGCTTTAGCGGGTCTATTAATCGAGATCAATCGTTTATTCCCGGATGCGTTGTCCTTGGAAAAGCCAAAATCACAGACCTTCAACTTTACGGCTAGGCTTCCATCTGAAAGGACCTTGAAGCAGTCAGAATCACAATTCTTCATTTCTGAGGATTTTCTTTCATGTAGAATGATTAACTTCAACTTCAAATCTCTATGA

Protein sequence

MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDALSLEKPKSQTFNFTARLPSERTLKQSESQFFISEDFLSCRMINFNFKSL
Homology
[Close]
BLAST of CsGy4G018580 vs. NCBI nr
Match: AHM88783.1 (photosystem I subunit IX, partial (chloroplast) [Lagenaria siceraria] >AHM88898.1 photosystem I subunit IX, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 76.3 bits (186), Expect = 5.8e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL 38
          MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL
Sbjct: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL 37

[Close]
BLAST of CsGy4G018580 vs. NCBI nr
Match: AHM91199.1 (photosystem I subunit IX, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 76.3 bits (186), Expect = 5.8e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL 38
          MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL
Sbjct: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL 37

[Close]
BLAST of CsGy4G018580 vs. NCBI nr
Match: AHM91256.1 (photosystem I subunit IX, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 76.3 bits (186), Expect = 5.8e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL 38
          MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL
Sbjct: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL 37

[Close]
BLAST of CsGy4G018580 vs. NCBI nr
Match: YP_004841803.1 (photosystem I subunit IX [Cucumis melo subsp. melo] >YP_009004064.1 photosystem I subunit IX [Cucumis hystrix] >YP_009317406.1 PSI protein J (chloroplast) [Coccinia grandis] >YP_009326009.1 photosystem I subunit IX (chloroplast) [Citrullus lanatus] >YP_009346504.1 photosystem I subunit IX (chloroplast) [Cucumis x hytivus] >YP_009348051.1 photosystem I subunit IX (plastid) [Citrullus mucosospermus] >YP_009420814.1 photosystem I subunit IX (chloroplast) [Citrullus colocynthis] >YP_009431577.1 photosystem I subunit IX (chloroplast) [Citrullus amarus] >YP_009431662.1 photosystem I subunit IX (chloroplast) [Citrullus rehmii] >YP_009447470.1 photosystem I subunit IX (chloroplast) [Cucurbita maxima] >YP_009447555.1 photosystem I subunit IX (chloroplast) [Cucurbita moschata] >YP_009456166.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >YP_009505100.1 photosystem I subunit IX (chloroplast) [Cucurbita pepo] >Q2QD69.1 RecName: Full=Photosystem I reaction center subunit IX; AltName: Full=PSI-J >AAZ94671.1 PSI reaction center subunit IX (chloroplast) [Cucumis sativus] >ABI97437.1 photosystem I subunit IX (chloroplast) [Cucumis sativus] >ABI98765.1 photosystem I subunit IX (chloroplast) [Cucumis sativus] >AEM76912.1 photosystem I subunit IX (chloroplast) [Cucumis melo subsp. melo] >AHJ61406.1 photosystem I subunit IX (plastid) [Cucumis hystrix] >AHM88724.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM88841.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM88956.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM89014.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM89073.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM89132.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM89191.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM89250.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM89310.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM89369.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM89428.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM89487.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM89547.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM89606.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM89665.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM89724.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM89783.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM89842.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM89901.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM89960.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM90019.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM90078.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM90137.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM90196.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM90255.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM90314.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM90373.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM90432.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM90491.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM90550.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM90609.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM90668.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM90727.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM90786.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM90845.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM90904.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM90963.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM91022.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM91081.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM91139.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AHM91314.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >ALF03321.1 PSI protein J (chloroplast) [Cucumis sativus var. hardwickii] >ANF28397.1 PSI protein J (chloroplast) [Cucumis sativus var. hardwickii] >AOW71114.1 photosystem I subunit IX (chloroplast) [Cucumis x hytivus] >AOX48781.1 PSI protein J (chloroplast) [Coccinia grandis] >AOX48866.1 PSI protein J (chloroplast) [Coccinia grandis] >APD52500.1 photosystem I subunit IX (chloroplast) [Citrullus lanatus] >APW82481.1 photosystem I subunit IX (plastid) [Citrullus lanatus subsp. vulgaris] >APW82566.1 photosystem I subunit IX (plastid) [Citrullus lanatus subsp. vulgaris] >APW82651.1 photosystem I subunit IX (plastid) [Citrullus lanatus subsp. vulgaris] >APW82736.1 photosystem I subunit IX (plastid) [Citrullus mucosospermus] >APW82821.1 photosystem I subunit IX (plastid) [Citrullus mucosospermus] >APW82906.1 photosystem I subunit IX (plastid) [Citrullus lanatus subsp. vulgaris] >APW82991.1 photosystem I subunit IX (plastid) [Citrullus lanatus subsp. vulgaris] >APW83076.1 photosystem I subunit IX (plastid) [Citrullus lanatus subsp. vulgaris] >APW83161.1 photosystem I subunit IX (plastid) [Citrullus lanatus subsp. vulgaris] >APW83246.1 photosystem I subunit IX (plastid) [Citrullus lanatus subsp. vulgaris] >APW83331.1 photosystem I subunit IX (plastid) [Citrullus mucosospermus] >ARQ16098.1 photosystem I subunit IX (chloroplast) [Cucumis sativus] >ARQ16181.1 photosystem I subunit IX (chloroplast) [Cucumis sativus] >ARQ16264.1 photosystem I subunit IX (chloroplast) [Cucumis sativus] >ARQ16347.1 photosystem I subunit IX (chloroplast) [Cucumis sativus] >ASP44502.1 photosystem I subunit IX (chloroplast) [Citrullus colocynthis] >ASY96205.1 photosystem I subunit IX (chloroplast) [Citrullus amarus] >ASY96288.1 photosystem I subunit IX (chloroplast) [Citrullus rehmii] >ASY96375.1 photosystem I subunit IX (chloroplast) [Cucumis melo subsp. agrestis] >ASY96462.1 photosystem I subunit IX (chloroplast) [Cucumis melo subsp. agrestis] >ASY96549.1 photosystem I subunit IX (chloroplast) [Cucumis melo subsp. agrestis] >ASY96635.1 photosystem I subunit IX (chloroplast) [Cucumis melo var. conomon] >ASY96723.1 photosystem I subunit IX (chloroplast) [Cucumis melo var. makuwa] >ASY96810.1 photosystem I subunit IX (chloroplast) [Cucumis melo var. momordica] >ASY96897.1 photosystem I subunit IX (chloroplast) [Cucumis melo var. dudaim] >ASY96984.1 photosystem I subunit IX (chloroplast) [Cucumis melo var. cantalupo] >ASY97071.1 photosystem I subunit IX (chloroplast) [Cucumis melo var. cantalupo] >ASY97158.1 photosystem I subunit IX (chloroplast) [Cucumis melo var. inodorus] >ASY97245.1 photosystem I subunit IX (chloroplast) [Cucumis melo var. cantalupo] >ASY97332.1 photosystem I subunit IX (chloroplast) [Cucumis melo var. flexuosus] >ASY97419.1 photosystem I subunit IX (chloroplast) [Cucumis melo var. flexuosus] >ASY97506.1 photosystem I subunit IX (chloroplast) [Cucumis sativus var. hardwickii] >ATY69913.1 photosystem I subunit IX (chloroplast) [Cucurbita maxima] >ATY69995.1 photosystem I subunit IX (chloroplast) [Cucurbita moschata] >AUJ21932.1 photosystem I subunit IX (chloroplast) [Lagenaria siceraria] >AVE15351.1 PsaJ (chloroplast) [Cucumis sativus var. sativus] >AWX90391.1 photosystem I subunit IX (chloroplast) [Cucurbita pepo] >AXR94539.1 photosystem I subunit IX (chloroplast) [Hodgsonia macrocarpa] >AXR94625.1 photosystem I subunit IX (chloroplast) [Hodgsonia macrocarpa] >AXR94709.1 photosystem I subunit IX (chloroplast) [Hodgsonia macrocarpa] >AXR94794.1 photosystem I subunit IX (chloroplast) [Hodgsonia macrocarpa])

HSP 1 Score: 76.3 bits (186), Expect = 5.8e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL 38
          MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL
Sbjct: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL 37

[Close]
BLAST of CsGy4G018580 vs. NCBI nr
Match: YP_007026572.1 (photosystem I subunit IX [Festuca ovina] >YP_009003848.1 photosystem I subunit IX [Deschampsia antarctica] >YP_009156309.1 photosystem I subunit IX (plastid) [Helictochloa hookeri] >AFV62752.1 photosystem I subunit IX (plastid) [Festuca ovina] >AHI43063.1 photosystem I subunit IX (plastid) [Deschampsia antarctica] >AJV89216.1 photosystem I subunit IX (plastid) [Helictochloa hookeri])

HSP 1 Score: 75.9 bits (185), Expect = 7.5e-11
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDALS 39
          MRD+KTYLSVAPV+ST+WFGALAGLLIEINRLFPDALS
Sbjct: 1  MRDIKTYLSVAPVISTLWFGALAGLLIEINRLFPDALS 38

[Close]
BLAST of CsGy4G018580 vs. TAIR10
Match: ATCG00630.1 (PSAJ)

HSP 1 Score: 73.6 bits (179), Expect = 6.8e-14
Identity = 34/38 (89.47%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDALS 39
          MRDLKTYLSVAPV+ST+WFG+LAGLLIEINRLFPDAL+
Sbjct: 1  MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALT 38

[Close]
BLAST of CsGy4G018580 vs. Swiss-Prot
Match: sp|Q2QD69|PSAJ_CUCSA (Photosystem I reaction center subunit IX OS=Cucumis sativus OX=3659 GN=psaJ PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL 38
          MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL
Sbjct: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL 37

[Close]
BLAST of CsGy4G018580 vs. Swiss-Prot
Match: sp|A1EA28|PSAJ_AGRST (Photosystem I reaction center subunit IX OS=Agrostis stolonifera OX=63632 GN=psaJ PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.2e-13
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDALS 39
          MRD+KTYLSVAPV+ST+WFGALAGLLIEINRLFPDALS
Sbjct: 1  MRDIKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALS 38

[Close]
BLAST of CsGy4G018580 vs. Swiss-Prot
Match: sp|A1E9L0|PSAJ_HORVU (Photosystem I reaction center subunit IX OS=Hordeum vulgare OX=4513 GN=psaJ PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.2e-13
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDALS 39
          MRD+KTYLSVAPV+ST+WFGALAGLLIEINRLFPDALS
Sbjct: 1  MRDIKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALS 38

[Close]
BLAST of CsGy4G018580 vs. Swiss-Prot
Match: sp|A8Y9A6|PSAJ_LOLPR (Photosystem I reaction center subunit IX OS=Lolium perenne OX=4522 GN=psaJ PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.2e-13
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDALS 39
          MRD+KTYLSVAPV+ST+WFGALAGLLIEINRLFPDALS
Sbjct: 1  MRDIKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALS 38

[Close]
BLAST of CsGy4G018580 vs. Swiss-Prot
Match: sp|P62596|PSAJ_MAIZE (Photosystem I reaction center subunit IX OS=Zea mays OX=4577 GN=psaJ PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.2e-13
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDALS 39
          MRD+KTYLSVAPV+ST+WFGALAGLLIEINRLFPDALS
Sbjct: 1  MRDIKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALS 38

[Close]
BLAST of CsGy4G018580 vs. TrEMBL
Match: tr|X2EY87|X2EY87_LAGSI (Photosystem I subunit IX (Fragment) OS=Lagenaria siceraria OX=3668 GN=psaJ PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL 38
          MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL
Sbjct: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL 37

[Close]
BLAST of CsGy4G018580 vs. TrEMBL
Match: tr|X2F5Y9|X2F5Y9_LAGSI (Photosystem I reaction center subunit IX OS=Lagenaria siceraria OX=3668 GN=psaJ PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL 38
          MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL
Sbjct: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL 37

[Close]
BLAST of CsGy4G018580 vs. TrEMBL
Match: tr|A0A286NG30|A0A286NG30_CUCME (Photosystem I reaction center subunit IX OS=Cucumis melo var. flexuosus OX=1120798 GN=psaJ PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL 38
          MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL
Sbjct: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL 37

[Close]
BLAST of CsGy4G018580 vs. TrEMBL
Match: tr|A0A249RY44|A0A249RY44_CUCME (Photosystem I reaction center subunit IX OS=Cucumis melo subsp. agrestis OX=217619 GN=psaJ PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL 38
          MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL
Sbjct: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL 37

[Close]
BLAST of CsGy4G018580 vs. TrEMBL
Match: tr|A0A1P8LDI6|A0A1P8LDI6_CITLA (Photosystem I reaction center subunit IX OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=psaJ PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL 38
          MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL
Sbjct: 1  MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDAL 37

The following BLAST results are available for this feature:
BLAST of CsGy4G018580 vs. NCBI nr
Match NameE-valueIdentityDescription
AHM88783.15.8e-11100.00photosystem I subunit IX, partial (chloroplast) [Lagenaria siceraria] >AHM88898.... [more]
AHM91199.15.8e-11100.00photosystem I subunit IX, partial (chloroplast) [Lagenaria siceraria][more]
AHM91256.15.8e-11100.00photosystem I subunit IX, partial (chloroplast) [Lagenaria siceraria][more]
YP_004841803.15.8e-11100.00photosystem I subunit IX [Cucumis melo subsp. melo] >YP_009004064.1 photosystem ... [more]
YP_007026572.17.5e-1192.11photosystem I subunit IX [Festuca ovina] >YP_009003848.1 photosystem I subunit I... [more]
BLAST of CsGy4G018580 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00630.16.8e-1489.47PSAJ[more]
BLAST of CsGy4G018580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q2QD69|PSAJ_CUCSA1.9e-13100.00Photosystem I reaction center subunit IX OS=Cucumis sativus OX=3659 GN=psaJ PE=3... [more]
sp|A1EA28|PSAJ_AGRST4.2e-1392.11Photosystem I reaction center subunit IX OS=Agrostis stolonifera OX=63632 GN=psa... [more]
sp|A1E9L0|PSAJ_HORVU4.2e-1392.11Photosystem I reaction center subunit IX OS=Hordeum vulgare OX=4513 GN=psaJ PE=1... [more]
sp|A8Y9A6|PSAJ_LOLPR4.2e-1392.11Photosystem I reaction center subunit IX OS=Lolium perenne OX=4522 GN=psaJ PE=3 ... [more]
sp|P62596|PSAJ_MAIZE4.2e-1392.11Photosystem I reaction center subunit IX OS=Zea mays OX=4577 GN=psaJ PE=3 SV=1[more]
BLAST of CsGy4G018580 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|X2EY87|X2EY87_LAGSI3.8e-11100.00Photosystem I subunit IX (Fragment) OS=Lagenaria siceraria OX=3668 GN=psaJ PE=3 ... [more]
tr|X2F5Y9|X2F5Y9_LAGSI3.8e-11100.00Photosystem I reaction center subunit IX OS=Lagenaria siceraria OX=3668 GN=psaJ ... [more]
tr|A0A286NG30|A0A286NG30_CUCME3.8e-11100.00Photosystem I reaction center subunit IX OS=Cucumis melo var. flexuosus OX=11207... [more]
tr|A0A249RY44|A0A249RY44_CUCME3.8e-11100.00Photosystem I reaction center subunit IX OS=Cucumis melo subsp. agrestis OX=2176... [more]
tr|A0A1P8LDI6|A0A1P8LDI6_CITLA3.8e-11100.00Photosystem I reaction center subunit IX OS=Citrullus lanatus subsp. vulgaris OX... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: Cellular Component
TermDefinition
GO:0009522photosystem I
Vocabulary: INTERPRO
TermDefinition
IPR036062PSI_PsaJ_sf
IPR002615PSI_PsaJ
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0006412 translation
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G018580.1CsGy4G018580.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.20.5.510coord: 1..40
e-value: 5.2E-23
score: 82.9
NoneNo IPR availablePANTHERPTHR36082:SF2PHOTOSYSTEM I REACTION CENTER SUBUNIT IXcoord: 1..39
IPR002615Photosystem I PsaJ, reaction centre subunit IXPFAMPF01701PSI_PsaJcoord: 1..37
e-value: 1.9E-20
score: 73.0
IPR002615Photosystem I PsaJ, reaction centre subunit IXPANTHERPTHR36082FAMILY NOT NAMEDcoord: 1..39
IPR002615Photosystem I PsaJ, reaction centre subunit IXPRODOMPD004198coord: 1..37
e-value: 4.0E-14
score: 184.0
IPR002615Photosystem I PsaJ, reaction centre subunit IXHAMAPMF_00522PSI_PsaJcoord: 1..41
score: 15.074
IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilySUPERFAMILYSSF81544Subunit IX of photosystem I reaction centre, PsaJcoord: 1..38

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G018580Cucurbita maxima (Rimu)cgybcmaB530
CsGy4G018580Cucurbita maxima (Rimu)cgybcmaB570
CsGy4G018580Cucurbita moschata (Rifu)cgybcmoB511
CsGy4G018580Cucurbita moschata (Rifu)cgybcmoB544
CsGy4G018580Cucurbita pepo (Zucchini)cgybcpeB465
CsGy4G018580Cucurbita pepo (Zucchini)cgybcpeB525
CsGy4G018580Cucumber (Chinese Long) v2cgybcuB167
CsGy4G018580Bottle gourd (USVL1VR-Ls)cgyblsiB238
CsGy4G018580Melon (DHL92) v3.5.1cgybmeB281
CsGy4G018580Watermelon (Charleston Gray)cgybwcgB283
CsGy4G018580Watermelon (97103) v1cgybwmB316
CsGy4G018580Wild cucumber (PI 183967)cgybcpiB170
CsGy4G018580Silver-seed gourdcarcgybB0482
CsGy4G018580Silver-seed gourdcarcgybB0521
CsGy4G018580Cucumber (Chinese Long) v3cgybcucB171
CsGy4G018580Watermelon (97103) v2cgybwmbB283
CsGy4G018580Watermelon (97103) v2cgybwmbB288
CsGy4G018580Wax gourdcgybwgoB375