CsGy4G017530 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G017530
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionVascular plant one zinc finger protein isoform 4
LocationChr4 : 22654471 .. 22655500 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTCACTAGCCTTCCTTATTCACAAATTCTCTACATATAATCAGTCTAATCCAGCTTCTAAGGTAAAGGATAAATGGAAAAGTATTGCCAATTAAAAACAATGCACAAAGCTTCTTAACCATTTAACAAAGTTCTATTAATTGCACTTGAGACATAATCTTGTAGTGTTTTCTATTTTATGTCATTTGCTGGAAACTGGCTGGTTTCTCTTGGGATCCATGTCTACAAGCCCAACTTCTTAAAACATGTGACTTTTTCTATTGGATTAGTTGTTGTTTGCCTCTTATTTGTGATGACAGTATCTGCATAACAGTTGTGAGAATTGAGGCTTATCAATTAATCCAGCCTGATTTTTTTATTTTTTTTGTCATTATGGTATATGTGCTTCTATTGTTGTTGTTTGTGATTTTCTGATATTACATTTCTTGATGAGGAGACAATCAGGGAAGAACTCTACTTCGACAAGCCTAGATGGGCCTTTTAAGAGTGACAATCGAAAGCAAAGGTCATTACCCGATTATAATGGCCGTGGTTGGCATGAATCAAGGAAGCTAGTGATGGAGTTTGGTGGTCAGAAGAAGTCTTACATGGATCCACAAGCATCAATCGGTGTTTTAGCCATCTGCATTATTTCCATATCATAGAAACACAACCTTTGGGTTGACTACATTTTATCCATATTCCATGAACTAGAAAAGTAATTTGCACAACAATTGGTGGATTGATGAATTCAGTGGCTCGTTATGTTGTTTTACCACATGAAAATGGTCATTGTAGTTTTACTATTCGATTGAGTAACATATTAGTGGGGAAAGGAATTGTAAGCTTTAATATTTAATATTACAATATATCTACATTAGGTGTACATATAACCATCTTCCACCAGTAGTTTCTAATAATCCATAGCACTAAATAATTTTTAGTTTTTCTTTTATACTTTCAATGGAATAAAATTATAAGGCACATTATTCCACTGTTTCTTTGTGATTTCTTCTTTCTCTTCAACAAGTGTTCGTATGATAGTAC

mRNA sequence

ATGTGTTCACTAGCCTTCCTTATTCACAAATTCTCTACATATAATCAGTCTAATCCAGCTTCTAAGGTAAAGGATAAATGGAAAAGGAAGAACTCTACTTCGACAAGCCTAGATGGGCCTTTTAAGAGTGACAATCGAAAGCAAAGGTCATTACCCGATTATAATGGCCGTGGTTGGCATGAATCAAGGAAGCTAGTGATGGAGTTTGGTGGTCAGAAGAAGTCTTACATGGATCCACAAGCATCAATCGGTGTTTTAGCCATCTGCATTATTTCCATATCATAGAAACACAACCTTTGGGTTGACTACATTTTATCCATATTCCATGAACTAGAAAAGTAATTTGCACAACAATTGGTGGATTGATGAATTCAGTGGCTCGTTATGTTGTTTTACCACATGAAAATGGTCATTGTAGTTTTACTATTCGATTGAGTAACATATTAGTGGGGAAAGGAATTGTAAGCTTTAATATTTAATATTACAATATATCTACATTAGGTGTACATATAACCATCTTCCACCAGTAGTTTCTAATAATCCATAGCACTAAATAATTTTTAGTTTTTCTTTTATACTTTCAATGGAATAAAATTATAAGGCACATTATTCCACTGTTTCTTTGTGATTTCTTCTTTCTCTTCAACAAGTGTTCGTATGATAGTAC

Coding sequence (CDS)

ATGTGTTCACTAGCCTTCCTTATTCACAAATTCTCTACATATAATCAGTCTAATCCAGCTTCTAAGGTAAAGGATAAATGGAAAAGGAAGAACTCTACTTCGACAAGCCTAGATGGGCCTTTTAAGAGTGACAATCGAAAGCAAAGGTCATTACCCGATTATAATGGCCGTGGTTGGCATGAATCAAGGAAGCTAGTGATGGAGTTTGGTGGTCAGAAGAAGTCTTACATGGATCCACAAGCATCAATCGGTGTTTTAGCCATCTGCATTATTTCCATATCATAG

Protein sequence

MCSLAFLIHKFSTYNQSNPASKVKDKWKRKNSTSTSLDGPFKSDNRKQRSLPDYNGRGWHESRKLVMEFGGQKKSYMDPQASIGVLAICIISIS
Homology
[Close]
BLAST of CsGy4G017530 vs. NCBI nr
Match: KGN54627.1 (hypothetical protein Csa_4G410800 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-20
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 43 SDNRKQRSLPDYNGRGWHESRKLVMEFGGQKKSYMDPQASIGVLAICIISIS 95
          SDNRKQRSLPDYNGRGWHESRKLVMEFGGQKKSYMDPQASIGVLAICIISIS
Sbjct: 2  SDNRKQRSLPDYNGRGWHESRKLVMEFGGQKKSYMDPQASIGVLAICIISIS 53

[Close]
BLAST of CsGy4G017530 vs. NCBI nr
Match: XP_008455940.1 (PREDICTED: transcription factor VOZ1-like [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 41  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKS-YMDPQAS 83
           F+S NRKQRSLPDY+GRGWHESRKLVM EFGGQKKS YMDPQ S
Sbjct: 347 FESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPS 390

[Close]
BLAST of CsGy4G017530 vs. NCBI nr
Match: KGN63211.1 (hypothetical protein Csa_2G415530 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 41  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKS-YMDPQAS 83
           F+S NRKQRSLPDY+GRGWHESRKLVM EFGGQKKS YMDPQ S
Sbjct: 323 FESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPS 366

[Close]
BLAST of CsGy4G017530 vs. NCBI nr
Match: XP_011649982.1 (PREDICTED: transcription factor VOZ1-like [Cucumis sativus] >XP_011649983.1 PREDICTED: transcription factor VOZ1-like [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 41  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKS-YMDPQAS 83
           F+S NRKQRSLPDY+GRGWHESRKLVM EFGGQKKS YMDPQ S
Sbjct: 347 FESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPS 390

[Close]
BLAST of CsGy4G017530 vs. NCBI nr
Match: XP_022140419.1 (transcription factor VOZ1-like [Momordica charantia])

HSP 1 Score: 74.3 bits (181), Expect = 2.4e-10
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 41  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKS-YMDPQAS 83
           F+S NRKQRSLPDY GRGWHESRKLVM EFGGQKKS YMDPQ S
Sbjct: 343 FESGNRKQRSLPDYKGRGWHESRKLVMKEFGGQKKSYYMDPQPS 386

[Close]
BLAST of CsGy4G017530 vs. TAIR10
Match: AT1G28520.1 (vascular plant one zinc finger protein)

HSP 1 Score: 68.9 bits (167), Expect = 1.8e-12
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 41  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKS-YMDPQ 81
           F+S NRKQRSLPDYNGRGWHESRK +M EFGG K+S YMDPQ
Sbjct: 325 FESGNRKQRSLPDYNGRGWHESRKQIMVEFGGLKRSYYMDPQ 366

[Close]
BLAST of CsGy4G017530 vs. TAIR10
Match: AT2G42400.1 (vascular plant one zinc finger protein 2)

HSP 1 Score: 60.5 bits (145), Expect = 6.6e-10
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 41  FKSDNRKQRSLPDYNGRGWHESRK-LVMEFGGQKKS-YMDPQ 81
           + S NRKQRSLPDY+GRGWHESRK L+ E  GQK+S YMDPQ
Sbjct: 338 YDSGNRKQRSLPDYSGRGWHESRKQLMKEQEGQKRSYYMDPQ 379

[Close]
BLAST of CsGy4G017530 vs. Swiss-Prot
Match: sp|Q9SGQ0|VOZ1_ARATH (Transcription factor VOZ1 OS=Arabidopsis thaliana OX=3702 GN=VOZ1 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.3e-11
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 41  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKS-YMDPQ 81
           F+S NRKQRSLPDYNGRGWHESRK +M EFGG K+S YMDPQ
Sbjct: 325 FESGNRKQRSLPDYNGRGWHESRKQIMVEFGGLKRSYYMDPQ 366

[Close]
BLAST of CsGy4G017530 vs. Swiss-Prot
Match: sp|Q9SLB9|VOZ2_ARATH (Transcription factor VOZ2 OS=Arabidopsis thaliana OX=3702 GN=VOZ2 PE=1 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 41  FKSDNRKQRSLPDYNGRGWHESRK-LVMEFGGQKKS-YMDPQ 81
           + S NRKQRSLPDY+GRGWHESRK L+ E  GQK+S YMDPQ
Sbjct: 338 YDSGNRKQRSLPDYSGRGWHESRKQLMKEQEGQKRSYYMDPQ 379

[Close]
BLAST of CsGy4G017530 vs. TrEMBL
Match: tr|A0A0A0L207|A0A0A0L207_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G410800 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 43 SDNRKQRSLPDYNGRGWHESRKLVMEFGGQKKSYMDPQASIGVLAICIISIS 95
          SDNRKQRSLPDYNGRGWHESRKLVMEFGGQKKSYMDPQASIGVLAICIISIS
Sbjct: 2  SDNRKQRSLPDYNGRGWHESRKLVMEFGGQKKSYMDPQASIGVLAICIISIS 53

[Close]
BLAST of CsGy4G017530 vs. TrEMBL
Match: tr|A0A1S3C2S3|A0A1S3C2S3_CUCME (transcription factor VOZ1-like OS=Cucumis melo OX=3656 GN=LOC103496002 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 41  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKS-YMDPQAS 83
           F+S NRKQRSLPDY+GRGWHESRKLVM EFGGQKKS YMDPQ S
Sbjct: 347 FESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPS 390

[Close]
BLAST of CsGy4G017530 vs. TrEMBL
Match: tr|A0A0A0LT50|A0A0A0LT50_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G415530 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 41  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKS-YMDPQAS 83
           F+S NRKQRSLPDY+GRGWHESRKLVM EFGGQKKS YMDPQ S
Sbjct: 323 FESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPS 366

[Close]
BLAST of CsGy4G017530 vs. TrEMBL
Match: tr|W9QVA9|W9QVA9_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010548 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.7e-10
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 41  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKS-YMDPQAS 83
           F+S NRKQRSLPDYNGRGWHESRK +M EFGGQK+S YMDPQ S
Sbjct: 321 FESGNRKQRSLPDYNGRGWHESRKQIMKEFGGQKRSYYMDPQPS 364

[Close]
BLAST of CsGy4G017530 vs. TrEMBL
Match: tr|M5WU25|M5WU25_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G127200 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-09
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 41  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKS-YMDPQAS 83
           F+S NRKQRSLPDYNGRGWHESRK VM EFGG K+S YMDPQ S
Sbjct: 323 FESGNRKQRSLPDYNGRGWHESRKQVMKEFGGHKRSYYMDPQPS 366

The following BLAST results are available for this feature:
BLAST of CsGy4G017530 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54627.12.0e-20100.00hypothetical protein Csa_4G410800 [Cucumis sativus][more]
XP_008455940.11.9e-1086.36PREDICTED: transcription factor VOZ1-like [Cucumis melo][more]
KGN63211.11.9e-1086.36hypothetical protein Csa_2G415530 [Cucumis sativus][more]
XP_011649982.11.9e-1086.36PREDICTED: transcription factor VOZ1-like [Cucumis sativus] >XP_011649983.1 PRED... [more]
XP_022140419.12.4e-1086.36transcription factor VOZ1-like [Momordica charantia][more]
BLAST of CsGy4G017530 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G28520.11.8e-1280.95vascular plant one zinc finger protein[more]
AT2G42400.16.6e-1073.81vascular plant one zinc finger protein 2[more]
BLAST of CsGy4G017530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SGQ0|VOZ1_ARATH3.3e-1180.95Transcription factor VOZ1 OS=Arabidopsis thaliana OX=3702 GN=VOZ1 PE=1 SV=1[more]
sp|Q9SLB9|VOZ2_ARATH1.2e-0873.81Transcription factor VOZ2 OS=Arabidopsis thaliana OX=3702 GN=VOZ2 PE=1 SV=2[more]
BLAST of CsGy4G017530 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L207|A0A0A0L207_CUCSA1.3e-20100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G410800 PE=4 SV=1[more]
tr|A0A1S3C2S3|A0A1S3C2S3_CUCME1.2e-1086.36transcription factor VOZ1-like OS=Cucumis melo OX=3656 GN=LOC103496002 PE=4 SV=1[more]
tr|A0A0A0LT50|A0A0A0LT50_CUCSA1.2e-1086.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G415530 PE=4 SV=1[more]
tr|W9QVA9|W9QVA9_9ROSA4.7e-1081.82Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010548 PE=4 SV=1[more]
tr|M5WU25|M5WU25_PRUPE1.4e-0981.82Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G127200 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0048578positive regulation of long-day photoperiodism, flowering
Vocabulary: INTERPRO
TermDefinition
IPR039277VOZ1/VOZ2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0048578 positive regulation of long-day photoperiodism, flowering
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G017530.1CsGy4G017530.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..57
IPR039277Transcription factor VOZ1/VOZ2PANTHERPTHR33873FAMILY NOT NAMEDcoord: 41..82

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy4G017530Csa4G410800Cucumber (Chinese Long) v2cgybcuB167
CsGy4G017530CSPI04G18440Wild cucumber (PI 183967)cgybcpiB170
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G017530Cucumber (Chinese Long) v3cgybcucB171
CsGy4G017530Wax gourdcgybwgoB395
CsGy4G017530Melon (DHL92) v3.5.1cgybmeB253
CsGy4G017530Melon (DHL92) v3.6.1cgybmedB251