CsGy4G017490 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G017490
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	F-box protein At5g39250
Location	Chr4 : 22549175 .. 22551195 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCATAAACTTCTCATGCCACGAGGCCCTTCACTTGAACTTGTAGATGATGAAGGTGTGTTTTGTTGTGGAGTGATTGGCAATGTTGGTGGTGTTGATGAAGAAGCAATGTCACTAGGTTCATCATGATCATCGAAAAAAACTAAAAATTTGTAGTCTTCTGGTTCATCATTCCAATTCCATGATGCTTCTTCATCAAACATAACATCTCTACTTACCATCGTCTTCTTTGTCGCAGGATTATACAACTTGTAGCCTTTTGAGCTTGCATCATAGCCAACAAAAATATGTTTCTCACTTTTATCATCAAGCTTACTACGCTTTTGATCTGGTATATGCGCATAAGCCATACATCCAAATACTCTCAAATGAGCAATGGATCGTTTTCTTCCGGTCCATGCTTGTTGAGGAGTTGTGTTCCACAAGCTTCTAGTAGGGGAATAATTTGACAATGGATGGTTTTCTTCCTATCAATACTTTTCGTCCCTCATTCCTGTTGGAAGCGTACGATGAACACCCCAAATAGATAATTACCAAATAGAATATTTAAGAGGAAAAAATAAATTTTATTGGAAGACTTTAACTTTTTTATGTGTATTTTACTCACACTTGGATAATTTAGATTACAACATTTCAATCCTATTTATAGGATTGTCATGAGCATAACTCATACACAAATTAAACACAACAATTTAAAACCTACACTTAATTAATATGAAAACTCATACTAAATTAACTCTAAACATTTTAACTCACATCTTTTAACTTTTTCTAACTCTCATGAGTCAATTCACATATAACTTATTTATTAAAAGCAGGTTTAATTTTCAACATATCCTTCTCCTTCTTTAGCCAGCATTGTCAATAAAGATAAATCACAAATAAATCCAACTGACTCAACTACATAACACAAAGCACAAAATGTTGATTCAAAGTCCATATTGCTCAATCATAAGACAATAAAAGCTACAGAGACTGCTCTCATATTGACCAAACTTGAACTTCTCTTTCTCTCCTTAGATGAAGGAAGAACAAAAGATTTACCTTCTTTCATACTCAACAAAACCACTTCAGAGATTAAGATCTTGTGGTTAAACATACGTGTTTTCTTCTCTAGGATAAACAACATTTAAAAATGATCTTTAACTAAACTAAGCAAACACGTATTAGAAAGTAATAATTATGAACTTTGGTCTGAACACCCTTAGTGGAATTTATCCAAATGTATAAATTAGAAAGACCCTTTTAATATATTTAGAGTTTTCTTTATCGATGTTTGAAGTGAAGATAGATTAATCTTCTCACAAGTTGTTTCAGGTCAATCCTTAAAAGTGGTATGAAGAACCCACTAGCTAACGTGCTTAGTTATCACTTCGAAGTCCCTGACTTCAAAGTGACACTCCATGTTGAGCCAAAGTTCTCAATTCCAATATCCAATAGTGTAAGTGCATTCGTGCTTGTGGGAAGCAAGTAGTCCAACAAAGTTCCAAGGATAGTGAATAAATCATTATTTTATTATATTGATAGAACGTCGTACAGTGCATTGGATTTTGACTACCTCGATTTCTCAATGGGGTAGCTACAAAAATAGCAAAAATATTTATAATAATAAAACCCATGTTACTACATTTTCTAAATTGCAAAAGTAGCAAATTTAAAACAGATATCCCTTTGATAGCCCCATGGTAACTCATCGTTAGTCGTCTAATAATTGTCTAATATCACTAATTACTTGTCATATTTGTCATATTCACAATATGCAGAAAAGAGGTATCATTGACTGTTTTTTCTAAATGTTTTTGTCGTATGATGCAATTTTCCTTTTTCAATTGTCCATCTATTTGTCTTCGGAATTCGTGCATGGATCTCATTGCTTTTCATGGACGATGGGAATGGTGGTGAAATTGATGTTTTTGGAATAGTAATGGATTTCTAGGACGCTGCAAACACAAAGGATGAGGTATTATGGCCCTTGGACTTGCTTGATTGGAAATGAAGGAGTTGCCAACAACTTTTAA

mRNA sequence

ATGTCTCATAAACTTCTCATGCCACGAGGCCCTTCACTTGAACTTGTAGATGATGAAGGTGTGTTTTGTTGTGGAGTGATTGGCAATATTAATCTTCTCACAAGTTGTTTCAGGTCAATCCTTAAAAGTGGTATGAAGAACCCACTAGCTAACGTGCTTAGTTATCACTTCGAAGTCCCTGACTTCAAAGTGACACTCCATGTTGAGCCAAAGTTCTCAATTCCAATATCCAATAGTGTAAGTGCATTCGTGCTTGTGGGAAGCAAGACGCTGCAAACACAAAGGATGAGGTATTATGGCCCTTGGACTTGCTTGATTGGAAATGAAGGAGTTGCCAACAACTTTTAA

Coding sequence (CDS)

ATGTCTCATAAACTTCTCATGCCACGAGGCCCTTCACTTGAACTTGTAGATGATGAAGGTGTGTTTTGTTGTGGAGTGATTGGCAATATTAATCTTCTCACAAGTTGTTTCAGGTCAATCCTTAAAAGTGGTATGAAGAACCCACTAGCTAACGTGCTTAGTTATCACTTCGAAGTCCCTGACTTCAAAGTGACACTCCATGTTGAGCCAAAGTTCTCAATTCCAATATCCAATAGTGTAAGTGCATTCGTGCTTGTGGGAAGCAAGACGCTGCAAACACAAAGGATGAGGTATTATGGCCCTTGGACTTGCTTGATTGGAAATGAAGGAGTTGCCAACAACTTTTAA

Protein sequence

MSHKLLMPRGPSLELVDDEGVFCCGVIGNINLLTSCFRSILKSGMKNPLANVLSYHFEVPDFKVTLHVEPKFSIPISNSVSAFVLVGSKTLQTQRMRYYGPWTCLIGNEGVANNF

Homology

[Close]

BLAST of CsGy4G017490 vs. NCBI nr
Match: XP_008448789.1 (PREDICTED: F-box protein At5g39250 [Cucumis melo] >XP_008448790.1 PREDICTED: F-box protein At5g39250 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 8.6e-10
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 40  ILKSGMKNP---LANVLSYHFEVPDFKVTLHVEPKFSIPISNSVSAFVLVGSK 90
           IL++GMK+P    +NVLSYH EVP+FK+TL VEP+FSIPISN+VSA VLVG K
Sbjct: 109 ILQNGMKSPPPGTSNVLSYHLEVPEFKMTLPVEPRFSIPISNAVSASVLVGRK 161

[Close]

BLAST of CsGy4G017490 vs. NCBI nr
Match: XP_004147232.1 (PREDICTED: F-box protein At5g39250 [Cucumis sativus] >KGN55831.1 hypothetical protein Csa_3G017250 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 1.9e-09
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 40  ILKSGMKNP---LANVLSYHFEVPDFKVTLHVEPKFSIPISNSVSAFVLVGSK 90
           I ++GMKNP     N+LSYH EVP+FK+TL VEP+FSIPISN+VSA VLVG K
Sbjct: 109 IFQNGMKNPPPSTGNLLSYHLEVPEFKMTLTVEPRFSIPISNTVSASVLVGRK 161

[Close]

BLAST of CsGy4G017490 vs. NCBI nr
Match: XP_022959961.1 (F-box protein At5g39250 [Cucurbita moschata] >XP_022959962.1 F-box protein At5g39250 [Cucurbita moschata] >XP_022959963.1 F-box protein At5g39250 [Cucurbita moschata])

HSP 1 Score: 64.7 bits (156), Expect = 2.4e-07
Identity = 31/52 (59.62%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 40  ILKSGMKNP--LANVLSYHFEVPDFKVTLHVEPKFSIPISNSVSAFVLVGSK 90
           +L+SGMK P   +NV++YH E P+FK+TL V+P+FSIPIS++VS  VLVG K
Sbjct: 109 VLQSGMKPPPGTSNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRK 160

[Close]

BLAST of CsGy4G017490 vs. NCBI nr
Match: XP_023005069.1 (F-box protein At5g39250-like [Cucurbita maxima] >XP_023005070.1 F-box protein At5g39250-like [Cucurbita maxima] >XP_023005071.1 F-box protein At5g39250-like [Cucurbita maxima])

HSP 1 Score: 64.7 bits (156), Expect = 2.4e-07
Identity = 31/52 (59.62%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 40  ILKSGMKNP--LANVLSYHFEVPDFKVTLHVEPKFSIPISNSVSAFVLVGSK 90
           +L+SGMK P   +NV++YH E P+FK+TL V+P+FSIPIS++VS  VLVG K
Sbjct: 109 VLQSGMKPPPGTSNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRK 160

[Close]

BLAST of CsGy4G017490 vs. NCBI nr
Match: XP_023513418.1 (F-box protein At5g39250-like [Cucurbita pepo subsp. pepo] >XP_023513419.1 F-box protein At5g39250-like [Cucurbita pepo subsp. pepo] >XP_023513420.1 F-box protein At5g39250-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.7 bits (156), Expect = 2.4e-07
Identity = 31/52 (59.62%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 40  ILKSGMKNP--LANVLSYHFEVPDFKVTLHVEPKFSIPISNSVSAFVLVGSK 90
           +L+SGMK P   +NV++YH E P+FK+TL V+P+FSIPIS++VS  VLVG K
Sbjct: 109 VLQSGMKPPPGTSNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRK 160

[Close]

BLAST of CsGy4G017490 vs. TAIR10
Match: AT5G39250.1 (F-box family protein)

HSP 1 Score: 41.2 bits (95), Expect = 5.0e-04
Identity = 18/38 (47.37%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 49  LANVLSYHFEVPDFKVTLHVEPKFSIPISNSVSAFVLV 87
           ++NVL  H   PD+K+ +  EP+F+IP++ SVS  VLV
Sbjct: 121 ISNVLRTHLGRPDYKMVVPAEPRFTIPLNQSVSVSVLV 158

[Close]

BLAST of CsGy4G017490 vs. TrEMBL
Match: tr|A0A1S3BL55|A0A1S3BL55_CUCME (F-box protein At5g39250 OS=Cucumis melo OX=3656 GN=LOC103490854 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.7e-10
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 40  ILKSGMKNP---LANVLSYHFEVPDFKVTLHVEPKFSIPISNSVSAFVLVGSK 90
           IL++GMK+P    +NVLSYH EVP+FK+TL VEP+FSIPISN+VSA VLVG K
Sbjct: 109 ILQNGMKSPPPGTSNVLSYHLEVPEFKMTLPVEPRFSIPISNAVSASVLVGRK 161

[Close]

BLAST of CsGy4G017490 vs. TrEMBL
Match: tr|A0A0A0L6S1|A0A0A0L6S1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017250 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-09
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 40  ILKSGMKNP---LANVLSYHFEVPDFKVTLHVEPKFSIPISNSVSAFVLVGSK 90
           I ++GMKNP     N+LSYH EVP+FK+TL VEP+FSIPISN+VSA VLVG K
Sbjct: 109 IFQNGMKNPPPSTGNLLSYHLEVPEFKMTLTVEPRFSIPISNTVSASVLVGRK 161

The following BLAST results are available for this feature:

BLAST of CsGy4G017490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448789.1	8.6e-10	69.81	PREDICTED: F-box protein At5g39250 [Cucumis melo] >XP_008448790.1 PREDICTED: F-b...	[more]
XP_004147232.1	1.9e-09	67.92	PREDICTED: F-box protein At5g39250 [Cucumis sativus] >KGN55831.1 hypothetical pr...	[more]
XP_022959961.1	2.4e-07	59.62	F-box protein At5g39250 [Cucurbita moschata] >XP_022959962.1 F-box protein At5g3...	[more]
XP_023005069.1	2.4e-07	59.62	F-box protein At5g39250-like [Cucurbita maxima] >XP_023005070.1 F-box protein At...	[more]
XP_023513418.1	2.4e-07	59.62	F-box protein At5g39250-like [Cucurbita pepo subsp. pepo] >XP_023513419.1 F-box ...	[more]

BLAST of CsGy4G017490 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G39250.1	5.0e-04	47.37	F-box family protein	[more]

BLAST of CsGy4G017490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G017490 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BL55\|A0A1S3BL55_CUCME	5.7e-10	69.81	F-box protein At5g39250 OS=Cucumis melo OX=3656 GN=LOC103490854 PE=4 SV=1	[more]
tr\|A0A0A0L6S1\|A0A0A0L6S1_CUCSA	1.3e-09	67.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017250 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G017490.1	CsGy4G017490.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G017490	Cucumber (Chinese Long) v2	cgybcuB167
CsGy4G017490	Melon (DHL92) v3.5.1	cgybmeB253
CsGy4G017490	Melon (DHL92) v3.6.1	cgybmedB251
CsGy4G017490	Wild cucumber (PI 183967)	cgybcpiB170
CsGy4G017490	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G017490	Wax gourd	cgybwgoB395