CsGy4G016380 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G016380
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr4 : 21239920 .. 21240267 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAACTCAGAAGCTCTTTATTGTTTCCATGCTGGTCGCGGTCACATTTTCCTGTTTTGCTTCATCGAGTATTATTCTCTATCACTGAACTATTGTAATTTCGTAATGTAATTTTTTTTGTTTGTTATTTTAAAGTTAAAGAAGTATTTATTAAATGCTAATTCTTTGTCACATGGCAGTGGAGGGAGATGATCTATGGAATTGTGTTATACCATGTTCGAACAACAACGGAGATATTTTGTGTAATACTGCATGCATCGAACAAGACGAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATTTCTGATATGAAAGTTTGTTGTTGCAACAATGGACGATGA

mRNA sequence

ATGGTAACTCAGAAGCTCTTTATTGTTTCCATGCTGGTCGCGGTCACATTTTCCTGTTTTGCTTCATCGATGGAGGGAGATGATCTATGGAATTGTGTTATACCATGTTCGAACAACAACGGAGATATTTTGTGTAATACTGCATGCATCGAACAAGACGAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATTTCTGATATGAAAGTTTGTTGTTGCAACAATGGACGATGA

Coding sequence (CDS)

ATGGTAACTCAGAAGCTCTTTATTGTTTCCATGCTGGTCGCGGTCACATTTTCCTGTTTTGCTTCATCGATGGAGGGAGATGATCTATGGAATTGTGTTATACCATGTTCGAACAACAACGGAGATATTTTGTGTAATACTGCATGCATCGAACAAGACGAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATTTCTGATATGAAAGTTTGTTGTTGCAACAATGGACGATGA

Protein sequence

MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCVPKLPGISDMKVCCCNNGR

Homology

[Close]

BLAST of CsGy4G016380 vs. NCBI nr
Match: KGN54497.1 (hypothetical protein Csa_4G339000 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 2.7e-39
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60
          MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLPGISDMKVCCCNNGR 79
          PKLPGISDMKVCCCNNGR
Sbjct: 61 PKLPGISDMKVCCCNNGR 78

[Close]

BLAST of CsGy4G016380 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_2G071930 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 5.9e-10
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V + F+C AS+ +GD L  +CV PCS+   D  C   CI+++ GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCN 76
           PKLP  S  K CCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

[Close]

BLAST of CsGy4G016380 vs. NCBI nr
Match: KGN61229.1 (hypothetical protein Csa_2G072430 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 8.5e-09
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V V F C  S+ +GD L  +CV PC +   D  C   CI ++ GAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCNN 77
           PKLP  S  K CCCN+
Sbjct: 61 YPKLP--STDKDCCCND 75

[Close]

BLAST of CsGy4G016380 vs. TrEMBL
Match: tr|A0A0A0L1R8|A0A0A0L1R8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.8e-39
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60
          MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLPGISDMKVCCCNNGR 79
          PKLPGISDMKVCCCNNGR
Sbjct: 61 PKLPGISDMKVCCCNNGR 78

[Close]

BLAST of CsGy4G016380 vs. TrEMBL
Match: tr|A0A0A0LHG9|A0A0A0LHG9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.9e-10
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V + F+C AS+ +GD L  +CV PCS+   D  C   CI+++ GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCN 76
           PKLP  S  K CCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

[Close]

BLAST of CsGy4G016380 vs. TrEMBL
Match: tr|A0A0A0LJG5|A0A0A0LJG5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.6e-09
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V V F C  S+ +GD L  +CV PC +   D  C   CI ++ GAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCNN 77
           PKLP  S  K CCCN+
Sbjct: 61 YPKLP--STDKDCCCND 75

[Close]

BLAST of CsGy4G016380 vs. TrEMBL
Match: tr|A0A0A0LKF5|A0A0A0LKF5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.1e-04
Identity = 24/45 (53.33%), Postives = 28/45 (62.22%), Query Frame = 0


Query: 31 NCVIPCSNNNGDILCNTACIEQDEGAGFCVPKLPGISDMKVCCCN 76
          +CV PCS+   D  C   CI ++ GAGFC PKLP  S  K CCCN
Sbjct: 11 HCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLP--STDKDCCCN 53

The following BLAST results are available for this feature:

BLAST of CsGy4G016380 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54497.1	2.7e-39	100.00	hypothetical protein Csa_4G339000 [Cucumis sativus]	[more]
KGN61228.1	5.9e-10	50.00	hypothetical protein Csa_2G071930 [Cucumis sativus]	[more]
KGN61229.1	8.5e-09	48.05	hypothetical protein Csa_2G072430 [Cucumis sativus]	[more]

BLAST of CsGy4G016380 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G016380 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G016380 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1R8\|A0A0A0L1R8_CUCSA	1.8e-39	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1	[more]
tr\|A0A0A0LHG9\|A0A0A0LHG9_CUCSA	3.9e-10	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1	[more]
tr\|A0A0A0LJG5\|A0A0A0LJG5_CUCSA	5.6e-09	48.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1	[more]
tr\|A0A0A0LKF5\|A0A0A0LKF5_CUCSA	7.1e-04	53.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G016380.1	CsGy4G016380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..19 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G016380	Melon (DHL92) v3.5.1	cgybmeB289
CsGy4G016380	Melon (DHL92) v3.6.1	cgybmedB288
CsGy4G016380	Watermelon (Charleston Gray)	cgybwcgB276
CsGy4G016380	Watermelon (Charleston Gray)	cgybwcgB281
CsGy4G016380	Watermelon (97103) v1	cgybwmB319
CsGy4G016380	Watermelon (97103) v1	cgybwmB321
CsGy4G016380	Wild cucumber (PI 183967)	cgybcpiB170
CsGy4G016380	Silver-seed gourd	carcgybB0483
CsGy4G016380	Silver-seed gourd	carcgybB0484
CsGy4G016380	Silver-seed gourd	carcgybB0531
CsGy4G016380	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G016380	Watermelon (97103) v2	cgybwmbB278
CsGy4G016380	Wax gourd	cgybwgoB377
CsGy4G016380	Cucurbita maxima (Rimu)	cgybcmaB539
CsGy4G016380	Cucurbita maxima (Rimu)	cgybcmaB565
CsGy4G016380	Cucurbita maxima (Rimu)	cgybcmaB575
CsGy4G016380	Cucurbita moschata (Rifu)	cgybcmoB514
CsGy4G016380	Cucurbita moschata (Rifu)	cgybcmoB540
CsGy4G016380	Cucurbita moschata (Rifu)	cgybcmoB549
CsGy4G016380	Cucurbita pepo (Zucchini)	cgybcpeB471
CsGy4G016380	Cucurbita pepo (Zucchini)	cgybcpeB528
CsGy4G016380	Cucurbita pepo (Zucchini)	cgybcpeB535
CsGy4G016380	Cucumber (Chinese Long) v2	cgybcuB167