CsGy4G016260 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G016260
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionprobable RNA polymerase II transcription factor B subunit 1-1 isoform X2
LocationChr4 : 21064778 .. 21066131 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTACGTTAATTGAGTTATGCAAACCTTTTACCGAGTTCAGTTATAATATGGTAACGTAGTTTGAACATTCTTTTTTAATATGCTTTTCTTATCTATCTAGTTCAGATTTTTGCTCTGAAACCAGCTGTTCACCAAGCATTTCTTAATCATGTTCCCAATAAGGTACTGCTAAATACTGGAAATAGTAACACGTTATCCTCTTTCTTCTTGGTTTTAATCATTTAGTTTGGAGGTAGTTAAATAAGCAAATATAAAAAACGTTAATTTATTTAAGCATTTTCTTTTTGTTTAATGACAGATATCGGAGAAAGACTTTTGGACAAAATATTTTAGAGCGGAGTACCTTCATAGTACAAAAAATTCTATTGCAGCTGCAGCAGAGGCTGCTGAAGATGAAGAACTTGCCCTTTTTCTGAAGGACGATGAGATATTGGCTGCTGAAACTCGGAAAAAGGTATATTTTTTAAAATGTCAACCTCTTAGAGATTTCTCGCTTATTAAAATACTTAGCGTGTTTTTTTTCTTCTGATTATTGTCATTTCATATTAAATTCTATTTATTTTGGTTCATGTTGTTTCTAGATTCGGCATGTTGATCCTACATTGGATTTGGAAGCTGATCTAGGGGATGATTACACACACCTTCCAGTATGTTATTGGTCTTTGTTACGGTATCTTGTTTGGATTTTTTTTTTTTGGTTCTTCATGGAAGACTTATCCTTATTTGCAGTGTTATTTATTCCTGGTGCGCTGAGAGTAAGAAAGAGTATTAGTTGTAATAGAAAGAGAGTTATTTGTATTAGAAAGGCGGTTAGTTGTGAGAATTCTTTAGGACCTTGTACTCATATTTTCCTATATATACAACACTTCTTCTCTCATTTGAGGAGGATAATCATTTGATAAAAAATTAGACTTTTGGTTTACACCAATGCCCTTGGAGGATTTATCTTTGGATCTTTAGCCTCATTCATATTTCAATGAAGCTTTTCTGTTTCTTGTTTAAAAAGAATAGACAGGAAAATCAATCTTTTTTGTTTTAGTACAATTCTTATGTACTTTGAGTATTAGTCTCTTTTATTAATACCTTTAATAAAGAGGCTCGTCTCCGTTTAGAAAAAATTAAGATACAGGAAGACCTTTCAGATAATAAAACTAATTTTTGTTATATTCAGATTGGTGGCTTTCTTATCTTACTGACTGATGCAAAATTTCTTAAATCTAGGATCATGGAATCTTTCGTGATGGTGGCAAGGAAATAACTGAATCACAAAATGAGCACTATAGAAGGACTTTGTCACAAGACCTTAATCGTCAAGGTGCAGTTGTTCTTGAAGGCAGAACTATTGGTTAG

mRNA sequence

ATGTTTCAGATTTTTGCTCTGAAACCAGCTGTTCACCAAGCATTTCTTAATCATGTTCCCAATAAGATATCGGAGAAAGACTTTTGGACAAAATATTTTAGAGCGGAGTACCTTCATAGTACAAAAAATTCTATTGCAGCTGCAGCAGAGGCTGCTGAAGATGAAGAACTTGCCCTTTTTCTGAAGGACGATGAGATATTGGCTGCTGAAACTCGGAAAAAGATTCGGCATGTTGATCCTACATTGGATTTGGAAGCTGATCTAGGGGATGATTACACACACCTTCCAGATCATGGAATCTTTCGTGATGGTGGCAAGGAAATAACTGAATCACAAAATGAGCACTATAGAAGGACTTTGTCACAAGACCTTAATCGTCAAGGTGCAGTTGTTCTTGAAGGCAGAACTATTGGTTAG

Coding sequence (CDS)

ATGTTTCAGATTTTTGCTCTGAAACCAGCTGTTCACCAAGCATTTCTTAATCATGTTCCCAATAAGATATCGGAGAAAGACTTTTGGACAAAATATTTTAGAGCGGAGTACCTTCATAGTACAAAAAATTCTATTGCAGCTGCAGCAGAGGCTGCTGAAGATGAAGAACTTGCCCTTTTTCTGAAGGACGATGAGATATTGGCTGCTGAAACTCGGAAAAAGATTCGGCATGTTGATCCTACATTGGATTTGGAAGCTGATCTAGGGGATGATTACACACACCTTCCAGATCATGGAATCTTTCGTGATGGTGGCAAGGAAATAACTGAATCACAAAATGAGCACTATAGAAGGACTTTGTCACAAGACCTTAATCGTCAAGGTGCAGTTGTTCTTGAAGGCAGAACTATTGGTTAG

Protein sequence

MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFLKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLSQDLNRQGAVVLEGRTIG
Homology
[Close]
BLAST of CsGy4G016260 vs. NCBI nr
Match: KGN54487.1 (hypothetical protein Csa_4G338420 [Cucumis sativus])

HSP 1 Score: 276.6 bits (706), Expect = 4.7e-71
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60
           MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF
Sbjct: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60

Query: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120
           LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL
Sbjct: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120

Query: 121 SQDLNRQGAVVLEGRTI 138
           SQDLNRQGAVVLEGRTI
Sbjct: 121 SQDLNRQGAVVLEGRTI 137

[Close]
BLAST of CsGy4G016260 vs. NCBI nr
Match: XP_011653743.1 (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumis sativus] >XP_011653744.1 PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 4.0e-70
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL
Sbjct: 209 YQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 268

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS
Sbjct: 269 KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 328

Query: 122 QDLNRQGAVVLEGRTI 138
           QDLNRQGAVVLEGRTI
Sbjct: 329 QDLNRQGAVVLEGRTI 344

[Close]
BLAST of CsGy4G016260 vs. NCBI nr
Match: XP_011653745.1 (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 4.0e-70
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL
Sbjct: 123 YQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 182

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS
Sbjct: 183 KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 242

Query: 122 QDLNRQGAVVLEGRTI 138
           QDLNRQGAVVLEGRTI
Sbjct: 243 QDLNRQGAVVLEGRTI 258

[Close]
BLAST of CsGy4G016260 vs. NCBI nr
Match: XP_008457278.1 (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumis melo])

HSP 1 Score: 271.2 bits (692), Expect = 2.0e-69
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFLNHVPNK+SEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL
Sbjct: 209 YQIFALKPAVHQAFLNHVPNKMSEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 268

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           KDDEILAA+TRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS
Sbjct: 269 KDDEILAADTRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 328

Query: 122 QDLNRQGAVVLEGRTI 138
           QDLNRQGAVVLEGRTI
Sbjct: 329 QDLNRQGAVVLEGRTI 344

[Close]
BLAST of CsGy4G016260 vs. NCBI nr
Match: XP_016902111.1 (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 [Cucumis melo])

HSP 1 Score: 271.2 bits (692), Expect = 2.0e-69
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFLNHVPNK+SEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL
Sbjct: 127 YQIFALKPAVHQAFLNHVPNKMSEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 186

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           KDDEILAA+TRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS
Sbjct: 187 KDDEILAADTRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 246

Query: 122 QDLNRQGAVVLEGRTI 138
           QDLNRQGAVVLEGRTI
Sbjct: 247 QDLNRQGAVVLEGRTI 262

[Close]
BLAST of CsGy4G016260 vs. TAIR10
Match: AT1G55750.1 (BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins))

HSP 1 Score: 206.5 bits (524), Expect = 1.1e-53
Identity = 101/137 (73.72%), Postives = 118/137 (86.13%), Query Frame = 0 

Query: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60
           +FQIFA KPAV QAF+N+VP+K++EKDFWTKYFRAEYL+STKN+  AAAEAAEDEELA+F
Sbjct: 204 IFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVF 263

Query: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120
           LK DEILA ETR KIR VDPTLD+EAD GDDYTHL DHGI RDG  ++ E QN+ ++R+L
Sbjct: 264 LKPDEILARETRHKIRRVDPTLDMEADQGDDYTHLMDHGIQRDGTMDVVEPQNDQFKRSL 323

Query: 121 SQDLNRQGAVVLEGRTI 138
            QDLNR  AVVLEGR+I
Sbjct: 324 LQDLNRHAAVVLEGRSI 340

[Close]
BLAST of CsGy4G016260 vs. TAIR10
Match: AT3G61420.1 (BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins))

HSP 1 Score: 200.3 bits (508), Expect = 7.8e-52
Identity = 99/137 (72.26%), Postives = 115/137 (83.94%), Query Frame = 0 

Query: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60
           +FQIFA KPAV QAF+N+VP K++EKDFWTKYFRAEYL+STKN+  AAAEAAEDEELA+F
Sbjct: 199 IFQIFAEKPAVRQAFINYVPKKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVF 258

Query: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120
           LK DEILA E R+K+R VDPTLD++AD GDDYTHL DHGI RDG  +I E QN+  +R+L
Sbjct: 259 LKPDEILAQEARQKMRRVDPTLDMDADEGDDYTHLMDHGIQRDGTNDIIEPQNDQLKRSL 318

Query: 121 SQDLNRQGAVVLEGRTI 138
            QDLNR  AVVLEGR I
Sbjct: 319 LQDLNRHAAVVLEGRCI 335

[Close]
BLAST of CsGy4G016260 vs. Swiss-Prot
Match: sp|Q3ECP0|TFB1A_ARATH (General transcription and DNA repair factor IIH subunit TFB1-1 OS=Arabidopsis thaliana OX=3702 GN=TFB1-1 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.0e-52
Identity = 101/137 (73.72%), Postives = 118/137 (86.13%), Query Frame = 0 

Query: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60
           +FQIFA KPAV QAF+N+VP+K++EKDFWTKYFRAEYL+STKN+  AAAEAAEDEELA+F
Sbjct: 204 IFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVF 263

Query: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120
           LK DEILA ETR KIR VDPTLD+EAD GDDYTHL DHGI RDG  ++ E QN+ ++R+L
Sbjct: 264 LKPDEILARETRHKIRRVDPTLDMEADQGDDYTHLMDHGIQRDGTMDVVEPQNDQFKRSL 323

Query: 121 SQDLNRQGAVVLEGRTI 138
            QDLNR  AVVLEGR+I
Sbjct: 324 LQDLNRHAAVVLEGRSI 340

[Close]
BLAST of CsGy4G016260 vs. Swiss-Prot
Match: sp|Q9M322|TFB1C_ARATH (General transcription and DNA repair factor IIH subunit TFB1-3 OS=Arabidopsis thaliana OX=3702 GN=TFB1-3 PE=2 SV=2)

HSP 1 Score: 200.3 bits (508), Expect = 1.4e-50
Identity = 99/137 (72.26%), Postives = 115/137 (83.94%), Query Frame = 0 

Query: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60
           +FQIFA KPAV QAF+N+VP K++EKDFWTKYFRAEYL+STKN+  AAAEAAEDEELA+F
Sbjct: 199 IFQIFAEKPAVRQAFINYVPKKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVF 258

Query: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120
           LK DEILA E R+K+R VDPTLD++AD GDDYTHL DHGI RDG  +I E QN+  +R+L
Sbjct: 259 LKPDEILAQEARQKMRRVDPTLDMDADEGDDYTHLMDHGIQRDGTNDIIEPQNDQLKRSL 318

Query: 121 SQDLNRQGAVVLEGRTI 138
            QDLNR  AVVLEGR I
Sbjct: 319 LQDLNRHAAVVLEGRCI 335

[Close]
BLAST of CsGy4G016260 vs. Swiss-Prot
Match: sp|Q55FP1|TF2H1_DICDI (General transcription factor IIH subunit 1 OS=Dictyostelium discoideum OX=44689 GN=gtf2h1 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.5e-07
Identity = 36/135 (26.67%), Postives = 71/135 (52.59%), Query Frame = 0 

Query: 3   QIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFLK 62
           QIF   P+V +A+  +VP KISE++FW KY +++Y +  ++S  A A   +D+  + +  
Sbjct: 270 QIFIQHPSVEKAYKANVPLKISEQNFWKKYVQSKYFYRDRSS--ANAPPVDDDLFSKYET 329

Query: 63  DDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLSQ 122
           D++      ++K+  ++P +DL +  G D      +G+  D  ++  + +       L +
Sbjct: 330 DEQNKIRILKRKLIDINPLVDLSSTDGFDTDVHSGYGVLLDQSQDPNKLEK---ALPLLR 389

Query: 123 DLNRQGAVVLEGRTI 138
             NR  A+VL  + +
Sbjct: 390 KFNRHSALVLGSKDL 399

[Close]
BLAST of CsGy4G016260 vs. TrEMBL
Match: tr|A0A0A0L1N5|A0A0A0L1N5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G338420 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 3.1e-71
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60
           MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF
Sbjct: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60

Query: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120
           LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL
Sbjct: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120

Query: 121 SQDLNRQGAVVLEGRTI 138
           SQDLNRQGAVVLEGRTI
Sbjct: 121 SQDLNRQGAVVLEGRTI 137

[Close]
BLAST of CsGy4G016260 vs. TrEMBL
Match: tr|A0A1S3C6E8|A0A1S3C6E8_CUCME (probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497008 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.3e-69
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFLNHVPNK+SEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL
Sbjct: 209 YQIFALKPAVHQAFLNHVPNKMSEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 268

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           KDDEILAA+TRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS
Sbjct: 269 KDDEILAADTRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 328

Query: 122 QDLNRQGAVVLEGRTI 138
           QDLNRQGAVVLEGRTI
Sbjct: 329 QDLNRQGAVVLEGRTI 344

[Close]
BLAST of CsGy4G016260 vs. TrEMBL
Match: tr|A0A1S4E1L0|A0A1S4E1L0_CUCME (probable RNA polymerase II transcription factor B subunit 1-1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497008 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.3e-69
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFLNHVPNK+SEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL
Sbjct: 123 YQIFALKPAVHQAFLNHVPNKMSEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 182

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           KDDEILAA+TRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS
Sbjct: 183 KDDEILAADTRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 242

Query: 122 QDLNRQGAVVLEGRTI 138
           QDLNRQGAVVLEGRTI
Sbjct: 243 QDLNRQGAVVLEGRTI 258

[Close]
BLAST of CsGy4G016260 vs. TrEMBL
Match: tr|A0A1S4E1K9|A0A1S4E1K9_CUCME (probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497008 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.3e-69
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFLNHVPNK+SEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL
Sbjct: 127 YQIFALKPAVHQAFLNHVPNKMSEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 186

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           KDDEILAA+TRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS
Sbjct: 187 KDDEILAADTRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 246

Query: 122 QDLNRQGAVVLEGRTI 138
           QDLNRQGAVVLEGRTI
Sbjct: 247 QDLNRQGAVVLEGRTI 262

[Close]
BLAST of CsGy4G016260 vs. TrEMBL
Match: tr|A0A1S4E1L2|A0A1S4E1L2_CUCME (probable RNA polymerase II transcription factor B subunit 1-1 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103497008 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.3e-69
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFLNHVPNK+SEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL
Sbjct: 115 YQIFALKPAVHQAFLNHVPNKMSEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 174

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           KDDEILAA+TRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS
Sbjct: 175 KDDEILAADTRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 234

Query: 122 QDLNRQGAVVLEGRTI 138
           QDLNRQGAVVLEGRTI
Sbjct: 235 QDLNRQGAVVLEGRTI 250

The following BLAST results are available for this feature:
BLAST of CsGy4G016260 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54487.14.7e-71100.00hypothetical protein Csa_4G338420 [Cucumis sativus][more]
XP_011653743.14.0e-7099.26PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform... [more]
XP_011653745.14.0e-7099.26PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform... [more]
XP_008457278.12.0e-6997.79PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform... [more]
XP_016902111.12.0e-6997.79PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform... [more]
BLAST of CsGy4G016260 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G55750.11.1e-5373.72BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS... [more]
AT3G61420.17.8e-5272.26BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS... [more]
BLAST of CsGy4G016260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q3ECP0|TFB1A_ARATH2.0e-5273.72General transcription and DNA repair factor IIH subunit TFB1-1 OS=Arabidopsis th... [more]
sp|Q9M322|TFB1C_ARATH1.4e-5072.26General transcription and DNA repair factor IIH subunit TFB1-3 OS=Arabidopsis th... [more]
sp|Q55FP1|TF2H1_DICDI2.5e-0726.67General transcription factor IIH subunit 1 OS=Dictyostelium discoideum OX=44689 ... [more]
BLAST of CsGy4G016260 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L1N5|A0A0A0L1N5_CUCSA3.1e-71100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G338420 PE=4 SV=1[more]
tr|A0A1S3C6E8|A0A1S3C6E8_CUCME1.3e-6997.79probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 OS=Cucu... [more]
tr|A0A1S4E1L0|A0A1S4E1L0_CUCME1.3e-6997.79probable RNA polymerase II transcription factor B subunit 1-1 isoform X3 OS=Cucu... [more]
tr|A0A1S4E1K9|A0A1S4E1K9_CUCME1.3e-6997.79probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 OS=Cucu... [more]
tr|A0A1S4E1L2|A0A1S4E1L2_CUCME1.3e-6997.79probable RNA polymerase II transcription factor B subunit 1-1 isoform X4 OS=Cucu... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0000439core TFIIH complex
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0006289nucleotide-excision repair
Vocabulary: INTERPRO
TermDefinition
IPR027079Tfb1/GTF2H1
IPR005607BSD_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0000439 core TFIIH complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G016260.1CsGy4G016260.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005607BSD domainPFAMPF03909BSDcoord: 4..43
e-value: 5.3E-9
score: 35.9
IPR005607BSD domainPROSITEPS50858BSDcoord: 1..40
score: 12.213
IPR027079TFIIH subunit Tfb1/GTF2H1PANTHERPTHR12856TRANSCRIPTION INITIATION FACTOR IIH-RELATEDcoord: 2..135
NoneNo IPR availableSUPERFAMILYSSF140383BSD domain-likecoord: 4..41

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy4G016260Lsi01G020130Bottle gourd (USVL1VR-Ls)cgyblsiB249
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G016260Cucurbita maxima (Rimu)cgybcmaB539
CsGy4G016260Cucurbita maxima (Rimu)cgybcmaB575
CsGy4G016260Cucurbita moschata (Rifu)cgybcmoB514
CsGy4G016260Cucurbita moschata (Rifu)cgybcmoB549
CsGy4G016260Cucurbita pepo (Zucchini)cgybcpeB471
CsGy4G016260Cucurbita pepo (Zucchini)cgybcpeB528
CsGy4G016260Cucumber (Chinese Long) v2cgybcuB167
CsGy4G016260Watermelon (Charleston Gray)cgybwcgB281
CsGy4G016260Watermelon (97103) v1cgybwmB321
CsGy4G016260Wild cucumber (PI 183967)cgybcpiB170
CsGy4G016260Silver-seed gourdcarcgybB0483
CsGy4G016260Silver-seed gourdcarcgybB0531
CsGy4G016260Cucumber (Chinese Long) v3cgybcucB171