CsGy4G016260 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G016260
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionprobable RNA polymerase II transcription factor B subunit 1-1 isoform X2
LocationChr4 : 21064778 .. 21066131 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTACGTTAATTGAGTTATGCAAACCTTTTACCGAGTTCAGTTATAATATGGTAACGTAGTTTGAACATTCTTTTTTAATATGCTTTTCTTATCTATCTAGTTCAGATTTTTGCTCTGAAACCAGCTGTTCACCAAGCATTTCTTAATCATGTTCCCAATAAGGTACTGCTAAATACTGGAAATAGTAACACGTTATCCTCTTTCTTCTTGGTTTTAATCATTTAGTTTGGAGGTAGTTAAATAAGCAAATATAAAAAACGTTAATTTATTTAAGCATTTTCTTTTTGTTTAATGACAGATATCGGAGAAAGACTTTTGGACAAAATATTTTAGAGCGGAGTACCTTCATAGTACAAAAAATTCTATTGCAGCTGCAGCAGAGGCTGCTGAAGATGAAGAACTTGCCCTTTTTCTGAAGGACGATGAGATATTGGCTGCTGAAACTCGGAAAAAGGTATATTTTTTAAAATGTCAACCTCTTAGAGATTTCTCGCTTATTAAAATACTTAGCGTGTTTTTTTTCTTCTGATTATTGTCATTTCATATTAAATTCTATTTATTTTGGTTCATGTTGTTTCTAGATTCGGCATGTTGATCCTACATTGGATTTGGAAGCTGATCTAGGGGATGATTACACACACCTTCCAGTATGTTATTGGTCTTTGTTACGGTATCTTGTTTGGATTTTTTTTTTTTGGTTCTTCATGGAAGACTTATCCTTATTTGCAGTGTTATTTATTCCTGGTGCGCTGAGAGTAAGAAAGAGTATTAGTTGTAATAGAAAGAGAGTTATTTGTATTAGAAAGGCGGTTAGTTGTGAGAATTCTTTAGGACCTTGTACTCATATTTTCCTATATATACAACACTTCTTCTCTCATTTGAGGAGGATAATCATTTGATAAAAAATTAGACTTTTGGTTTACACCAATGCCCTTGGAGGATTTATCTTTGGATCTTTAGCCTCATTCATATTTCAATGAAGCTTTTCTGTTTCTTGTTTAAAAAGAATAGACAGGAAAATCAATCTTTTTTGTTTTAGTACAATTCTTATGTACTTTGAGTATTAGTCTCTTTTATTAATACCTTTAATAAAGAGGCTCGTCTCCGTTTAGAAAAAATTAAGATACAGGAAGACCTTTCAGATAATAAAACTAATTTTTGTTATATTCAGATTGGTGGCTTTCTTATCTTACTGACTGATGCAAAATTTCTTAAATCTAGGATCATGGAATCTTTCGTGATGGTGGCAAGGAAATAACTGAATCACAAAATGAGCACTATAGAAGGACTTTGTCACAAGACCTTAATCGTCAAGGTGCAGTTGTTCTTGAAGGCAGAACTATTGGTTAG

mRNA sequence

ATGTTTCAGATTTTTGCTCTGAAACCAGCTGTTCACCAAGCATTTCTTAATCATGTTCCCAATAAGATATCGGAGAAAGACTTTTGGACAAAATATTTTAGAGCGGAGTACCTTCATAGTACAAAAAATTCTATTGCAGCTGCAGCAGAGGCTGCTGAAGATGAAGAACTTGCCCTTTTTCTGAAGGACGATGAGATATTGGCTGCTGAAACTCGGAAAAAGATTCGGCATGTTGATCCTACATTGGATTTGGAAGCTGATCTAGGGGATGATTACACACACCTTCCAGATCATGGAATCTTTCGTGATGGTGGCAAGGAAATAACTGAATCACAAAATGAGCACTATAGAAGGACTTTGTCACAAGACCTTAATCGTCAAGGTGCAGTTGTTCTTGAAGGCAGAACTATTGGTTAG

Coding sequence (CDS)

ATGTTTCAGATTTTTGCTCTGAAACCAGCTGTTCACCAAGCATTTCTTAATCATGTTCCCAATAAGATATCGGAGAAAGACTTTTGGACAAAATATTTTAGAGCGGAGTACCTTCATAGTACAAAAAATTCTATTGCAGCTGCAGCAGAGGCTGCTGAAGATGAAGAACTTGCCCTTTTTCTGAAGGACGATGAGATATTGGCTGCTGAAACTCGGAAAAAGATTCGGCATGTTGATCCTACATTGGATTTGGAAGCTGATCTAGGGGATGATTACACACACCTTCCAGATCATGGAATCTTTCGTGATGGTGGCAAGGAAATAACTGAATCACAAAATGAGCACTATAGAAGGACTTTGTCACAAGACCTTAATCGTCAAGGTGCAGTTGTTCTTGAAGGCAGAACTATTGGTTAG

Protein sequence

MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFLKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLSQDLNRQGAVVLEGRTIG
Homology
[Close]
BLAST of CsGy4G016260 vs. NCBI nr
Match: KGN54487.1 (hypothetical protein Csa_4G338420 [Cucumis sativus])

HSP 1 Score: 276.6 bits (706), Expect = 4.7e-71
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60
           MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF
Sbjct: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60

Query: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120
           LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL
Sbjct: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120

Query: 121 SQDLNRQGAVVLEGRTI 138
           SQDLNRQGAVVLEGRTI
Sbjct: 121 SQDLNRQGAVVLEGRTI 137

[Close]
BLAST of CsGy4G016260 vs. NCBI nr
Match: XP_011653743.1 (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumis sativus] >XP_011653744.1 PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 4.0e-70
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL
Sbjct: 209 YQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 268

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS
Sbjct: 269 KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 328

Query: 122 QDLNRQGAVVLEGRTI 138
           QDLNRQGAVVLEGRTI
Sbjct: 329 QDLNRQGAVVLEGRTI 344

[Close]
BLAST of CsGy4G016260 vs. NCBI nr
Match: XP_011653745.1 (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 4.0e-70
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL
Sbjct: 123 YQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 182

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS
Sbjct: 183 KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 242

Query: 122 QDLNRQGAVVLEGRTI 138
           QDLNRQGAVVLEGRTI
Sbjct: 243 QDLNRQGAVVLEGRTI 258

[Close]
BLAST of CsGy4G016260 vs. NCBI nr
Match: XP_008457278.1 (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumis melo])

HSP 1 Score: 271.2 bits (692), Expect = 2.0e-69
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFLNHVPNK+SEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL
Sbjct: 209 YQIFALKPAVHQAFLNHVPNKMSEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 268

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           KDDEILAA+TRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS
Sbjct: 269 KDDEILAADTRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 328

Query: 122 QDLNRQGAVVLEGRTI 138
           QDLNRQGAVVLEGRTI
Sbjct: 329 QDLNRQGAVVLEGRTI 344

[Close]
BLAST of CsGy4G016260 vs. NCBI nr
Match: XP_016902111.1 (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 [Cucumis melo])

HSP 1 Score: 271.2 bits (692), Expect = 2.0e-69
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFLNHVPNK+SEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL
Sbjct: 127 YQIFALKPAVHQAFLNHVPNKMSEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 186

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           KDDEILAA+TRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS
Sbjct: 187 KDDEILAADTRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 246

Query: 122 QDLNRQGAVVLEGRTI 138
           QDLNRQGAVVLEGRTI
Sbjct: 247 QDLNRQGAVVLEGRTI 262

[Close]
BLAST of CsGy4G016260 vs. TAIR10
Match: AT1G55750.1 (BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins))

HSP 1 Score: 206.5 bits (524), Expect = 1.1e-53
Identity = 101/137 (73.72%), Postives = 118/137 (86.13%), Query Frame = 0 

Query: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60
           +FQIFA KPAV QAF+N+VP+K++EKDFWTKYFRAEYL+STKN+  AAAEAAEDEELA+F
Sbjct: 204 IFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVF 263

Query: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120
           LK DEILA ETR KIR VDPTLD+EAD GDDYTHL DHGI RDG  ++ E QN+ ++R+L
Sbjct: 264 LKPDEILARETRHKIRRVDPTLDMEADQGDDYTHLMDHGIQRDGTMDVVEPQNDQFKRSL 323

Query: 121 SQDLNRQGAVVLEGRTI 138
            QDLNR  AVVLEGR+I
Sbjct: 324 LQDLNRHAAVVLEGRSI 340

[Close]
BLAST of CsGy4G016260 vs. TAIR10
Match: AT3G61420.1 (BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins))

HSP 1 Score: 200.3 bits (508), Expect = 7.8e-52
Identity = 99/137 (72.26%), Postives = 115/137 (83.94%), Query Frame = 0 

Query: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60
           +FQIFA KPAV QAF+N+VP K++EKDFWTKYFRAEYL+STKN+  AAAEAAEDEELA+F
Sbjct: 199 IFQIFAEKPAVRQAFINYVPKKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVF 258

Query: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120
           LK DEILA E R+K+R VDPTLD++AD GDDYTHL DHGI RDG  +I E QN+  +R+L
Sbjct: 259 LKPDEILAQEARQKMRRVDPTLDMDADEGDDYTHLMDHGIQRDGTNDIIEPQNDQLKRSL 318

Query: 121 SQDLNRQGAVVLEGRTI 138
            QDLNR  AVVLEGR I
Sbjct: 319 LQDLNRHAAVVLEGRCI 335

[Close]
BLAST of CsGy4G016260 vs. Swiss-Prot
Match: sp|Q3ECP0|TFB1A_ARATH (General transcription and DNA repair factor IIH subunit TFB1-1 OS=Arabidopsis thaliana OX=3702 GN=TFB1-1 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.0e-52
Identity = 101/137 (73.72%), Postives = 118/137 (86.13%), Query Frame = 0 

Query: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60
           +FQIFA KPAV QAF+N+VP+K++EKDFWTKYFRAEYL+STKN+  AAAEAAEDEELA+F
Sbjct: 204 IFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVF 263

Query: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120
           LK DEILA ETR KIR VDPTLD+EAD GDDYTHL DHGI RDG  ++ E QN+ ++R+L
Sbjct: 264 LKPDEILARETRHKIRRVDPTLDMEADQGDDYTHLMDHGIQRDGTMDVVEPQNDQFKRSL 323

Query: 121 SQDLNRQGAVVLEGRTI 138
            QDLNR  AVVLEGR+I
Sbjct: 324 LQDLNRHAAVVLEGRSI 340

[Close]
BLAST of CsGy4G016260 vs. Swiss-Prot
Match: sp|Q9M322|TFB1C_ARATH (General transcription and DNA repair factor IIH subunit TFB1-3 OS=Arabidopsis thaliana OX=3702 GN=TFB1-3 PE=2 SV=2)

HSP 1 Score: 200.3 bits (508), Expect = 1.4e-50
Identity = 99/137 (72.26%), Postives = 115/137 (83.94%), Query Frame = 0 

Query: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60
           +FQIFA KPAV QAF+N+VP K++EKDFWTKYFRAEYL+STKN+  AAAEAAEDEELA+F
Sbjct: 199 IFQIFAEKPAVRQAFINYVPKKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVF 258

Query: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120
           LK DEILA E R+K+R VDPTLD++AD GDDYTHL DHGI RDG  +I E QN+  +R+L
Sbjct: 259 LKPDEILAQEARQKMRRVDPTLDMDADEGDDYTHLMDHGIQRDGTNDIIEPQNDQLKRSL 318

Query: 121 SQDLNRQGAVVLEGRTI 138
            QDLNR  AVVLEGR I
Sbjct: 319 LQDLNRHAAVVLEGRCI 335

[Close]
BLAST of CsGy4G016260 vs. Swiss-Prot
Match: sp|Q55FP1|TF2H1_DICDI (General transcription factor IIH subunit 1 OS=Dictyostelium discoideum OX=44689 GN=gtf2h1 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.5e-07
Identity = 36/135 (26.67%), Postives = 71/135 (52.59%), Query Frame = 0 

Query: 3   QIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFLK 62
           QIF   P+V +A+  +VP KISE++FW KY +++Y +  ++S  A A   +D+  + +  
Sbjct: 270 QIFIQHPSVEKAYKANVPLKISEQNFWKKYVQSKYFYRDRSS--ANAPPVDDDLFSKYET 329

Query: 63  DDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLSQ 122
           D++      ++K+  ++P +DL +  G D      +G+  D  ++  + +       L +
Sbjct: 330 DEQNKIRILKRKLIDINPLVDLSSTDGFDTDVHSGYGVLLDQSQDPNKLEK---ALPLLR 389

Query: 123 DLNRQGAVVLEGRTI 138
             NR  A+VL  + +
Sbjct: 390 KFNRHSALVLGSKDL 399

[Close]
BLAST of CsGy4G016260 vs. TrEMBL
Match: tr|A0A0A0L1N5|A0A0A0L1N5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G338420 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 3.1e-71
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60
           MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF
Sbjct: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60

Query: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120
           LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL
Sbjct: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120

Query: 121 SQDLNRQGAVVLEGRTI 138
           SQDLNRQGAVVLEGRTI
Sbjct: 121 SQDLNRQGAVVLEGRTI 137

[Close]
BLAST of CsGy4G016260 vs. TrEMBL
Match: tr|A0A1S3C6E8|A0A1S3C6E8_CUCME (probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497008 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.3e-69
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFLNHVPNK+SEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL
Sbjct: 209 YQIFALKPAVHQAFLNHVPNKMSEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 268

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           KDDEILAA+TRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS
Sbjct: 269 KDDEILAADTRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 328

Query: 122 QDLNRQGAVVLEGRTI 138
           QDLNRQGAVVLEGRTI
Sbjct: 329 QDLNRQGAVVLEGRTI 344

[Close]
BLAST of CsGy4G016260 vs. TrEMBL
Match: tr|A0A1S4E1L0|A0A1S4E1L0_CUCME (probable RNA polymerase II transcription factor B subunit 1-1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497008 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.3e-69
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFLNHVPNK+SEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL
Sbjct: 123 YQIFALKPAVHQAFLNHVPNKMSEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 182

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           KDDEILAA+TRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS
Sbjct: 183 KDDEILAADTRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 242

Query: 122 QDLNRQGAVVLEGRTI 138
           QDLNRQGAVVLEGRTI
Sbjct: 243 QDLNRQGAVVLEGRTI 258

[Close]
BLAST of CsGy4G016260 vs. TrEMBL
Match: tr|A0A1S4E1K9|A0A1S4E1K9_CUCME (probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497008 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.3e-69
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFLNHVPNK+SEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL
Sbjct: 127 YQIFALKPAVHQAFLNHVPNKMSEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 186

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           KDDEILAA+TRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS
Sbjct: 187 KDDEILAADTRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 246

Query: 122 QDLNRQGAVVLEGRTI 138
           QDLNRQGAVVLEGRTI
Sbjct: 247 QDLNRQGAVVLEGRTI 262

[Close]
BLAST of CsGy4G016260 vs. TrEMBL
Match: tr|A0A1S4E1L2|A0A1S4E1L2_CUCME (probable RNA polymerase II transcription factor B subunit 1-1 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103497008 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.3e-69
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFLNHVPNK+SEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL
Sbjct: 115 YQIFALKPAVHQAFLNHVPNKMSEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 174

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           KDDEILAA+TRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS
Sbjct: 175 KDDEILAADTRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 234

Query: 122 QDLNRQGAVVLEGRTI 138
           QDLNRQGAVVLEGRTI
Sbjct: 235 QDLNRQGAVVLEGRTI 250

The following BLAST results are available for this feature:
BLAST of CsGy4G016260 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54487.14.7e-71100.00hypothetical protein Csa_4G338420 [Cucumis sativus][more]
XP_011653743.14.0e-7099.26PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform... [more]
XP_011653745.14.0e-7099.26PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform... [more]
XP_008457278.12.0e-6997.79PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform... [more]
XP_016902111.12.0e-6997.79PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform... [more]
BLAST of CsGy4G016260 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G55750.11.1e-5373.72BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS... [more]
AT3G61420.17.8e-5272.26BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS... [more]
BLAST of CsGy4G016260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q3ECP0|TFB1A_ARATH2.0e-5273.72General transcription and DNA repair factor IIH subunit TFB1-1 OS=Arabidopsis th... [more]
sp|Q9M322|TFB1C_ARATH1.4e-5072.26General transcription and DNA repair factor IIH subunit TFB1-3 OS=Arabidopsis th... [more]
sp|Q55FP1|TF2H1_DICDI2.5e-0726.67General transcription factor IIH subunit 1 OS=Dictyostelium discoideum OX=44689 ... [more]
BLAST of CsGy4G016260 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L1N5|A0A0A0L1N5_CUCSA3.1e-71100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G338420 PE=4 SV=1[more]
tr|A0A1S3C6E8|A0A1S3C6E8_CUCME1.3e-6997.79probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 OS=Cucu... [more]
tr|A0A1S4E1L0|A0A1S4E1L0_CUCME1.3e-6997.79probable RNA polymerase II transcription factor B subunit 1-1 isoform X3 OS=Cucu... [more]
tr|A0A1S4E1K9|A0A1S4E1K9_CUCME1.3e-6997.79probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 OS=Cucu... [more]
tr|A0A1S4E1L2|A0A1S4E1L2_CUCME1.3e-6997.79probable RNA polymerase II transcription factor B subunit 1-1 isoform X4 OS=Cucu... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0000439core TFIIH complex
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0006289nucleotide-excision repair
Vocabulary: INTERPRO
TermDefinition
IPR027079Tfb1/GTF2H1
IPR005607BSD_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0000439 core TFIIH complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G016260.1CsGy4G016260.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005607BSD domainPFAMPF03909BSDcoord: 4..43
e-value: 5.3E-9
score: 35.9
IPR005607BSD domainPROSITEPS50858BSDcoord: 1..40
score: 12.213
IPR027079TFIIH subunit Tfb1/GTF2H1PANTHERPTHR12856TRANSCRIPTION INITIATION FACTOR IIH-RELATEDcoord: 2..135
NoneNo IPR availableSUPERFAMILYSSF140383BSD domain-likecoord: 4..41

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy4G016260Lsi01G020130Bottle gourd (USVL1VR-Ls)cgyblsiB249
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G016260Cucurbita pepo (Zucchini)cgybcpeB471
CsGy4G016260Cucurbita pepo (Zucchini)cgybcpeB528
CsGy4G016260Cucumber (Chinese Long) v2cgybcuB167
CsGy4G016260Watermelon (Charleston Gray)cgybwcgB281
CsGy4G016260Watermelon (97103) v1cgybwmB321
CsGy4G016260Wild cucumber (PI 183967)cgybcpiB170
CsGy4G016260Silver-seed gourdcarcgybB0483
CsGy4G016260Silver-seed gourdcarcgybB0531
CsGy4G016260Cucumber (Chinese Long) v3cgybcucB171
CsGy4G016260Cucurbita maxima (Rimu)cgybcmaB539
CsGy4G016260Cucurbita maxima (Rimu)cgybcmaB575
CsGy4G016260Cucurbita moschata (Rifu)cgybcmoB514
CsGy4G016260Cucurbita moschata (Rifu)cgybcmoB549